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cytof software  (fluidigm)


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    Structured Review

    fluidigm cytof software
    Cytof Software, supplied by fluidigm, used in various techniques. Bioz Stars score: 93/100, based on 1523 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/biotools+programme/Hyperion+Imaging+Mass+Cytometry+System/pm40281306-442-19-21
    Average 93 stars, based on 1523 article reviews
    cytof software - by Bioz Stars, 2026-10
    93/100 stars

    Images

    Related Articles

    Imaging:

    Article Title: Insights into the architecture of earthworm metallothionein genes, powered by long-read genomics and transcriptomics
    Article Snippet: .. The tissue sections were imaged on the Hyperion imaging system (Standard Biotools). ..

    Article Title: Skin-derived myeloid precursors and joint-resident fibroblasts spread psoriatic disease from skin to joints
    Article Snippet: .. Acquisition was performed at 200 Hz on a Hyperion Imaging System (Standard Biotools, CYTOF software v. 7.1). ..

    Article Title: Multi-omics integration defines an ECM-associated intratumoral heterogeneity signature enabling prognosis assessment and therapeutic stratification in hepatocellular carcinoma.
    Article Snippet: Intratumoral heterogeneity (ITH) is a fundamental driver of hepatocellular carcinoma (HCC) progression and therapeutic resistance.. Here, we developed a multi-omics-derived ITH scoring system to improve patient stratification and guide precision therapy.. Using somatic mutation data from 361 TCGA HCC patients, we quantified genomic heterogeneity via the Mutant-Allele Tumor Heterogeneity (MATH) score, while single-cell RNA sequencing (scRNA-seq) of 20 HCC samples (our cohort and GSE149614) enabled assessment of cellular diversity.

    Article Title: Assessment of Imaging Mass Cytometry (IMC) as a Tool to Characterize Circulating Tumor Cells (CTCs) in Preclinical Mouse Models
    Article Snippet: .. Data were acquired by laser ablation with a Hyperion XTi Imaging System (Standard BioTools). ..

    Article Title: Tissue-scale mechanics controls differentiation strategy and dynamics of epithelial multilayering
    Article Snippet: Slides were then rinsed in 0.2% Triton X-100/PBS, stained with Cell-ID Intercalator-IR (Fluidigm #201192A) for 30 min at room temperature, washed in Milli-Q water, air-dried for 30 min, and stored until imaging. .. The samples were laser-ablated at 200 Hz using a Hyperion imaging mass cytometry system (Fluidigm) coupled to a Helios time-of-flight mass cytometer with a resolution of 1 μm. .. Slides were then rinsed in 0.2% Triton X-100/PBS, stained with Cell-ID Intercalator-IR (Fluidigm #201192A) for 30 min at room temperature, washed in Milli-Q water, air-dried for 30 min, and stored until imaging.

    Article Title: Treg-γδ T cell axis determines sexual dimorphism in hepatocarcinogenesis.
    Article Snippet: .. AR TI CL E IN P RE SS Imaging mass cytometry (IMC) and data processing Hyperion Mass Imaging System (Fluidigm Corporation, CA, USA) was conducted according to the tuning protocol provided by the manufacturer. ..

    Article Title: TERT drives liver tumorigenesis beyond telomere elongation
    Article Snippet: .. Imaging Mass Cytometry (IMC) was performed using the HyperionTM Imaging System (Standard BioTools, USA), a multiplexed spatial proteomics platform that enables simultaneous detection of multiple protein markers at subcellular resolution in formalin-fixed paraffin-embedded (FFPE) tissue sections. ..

    Software:

    Article Title: Skin-derived myeloid precursors and joint-resident fibroblasts spread psoriatic disease from skin to joints
    Article Snippet: .. Acquisition was performed at 200 Hz on a Hyperion Imaging System (Standard Biotools, CYTOF software v. 7.1). ..

    Cytometry:

    Article Title: Multi-omics integration defines an ECM-associated intratumoral heterogeneity signature enabling prognosis assessment and therapeutic stratification in hepatocellular carcinoma.
    Article Snippet: Intratumoral heterogeneity (ITH) is a fundamental driver of hepatocellular carcinoma (HCC) progression and therapeutic resistance.. Here, we developed a multi-omics-derived ITH scoring system to improve patient stratification and guide precision therapy.. Using somatic mutation data from 361 TCGA HCC patients, we quantified genomic heterogeneity via the Mutant-Allele Tumor Heterogeneity (MATH) score, while single-cell RNA sequencing (scRNA-seq) of 20 HCC samples (our cohort and GSE149614) enabled assessment of cellular diversity.

    Article Title: Tissue-scale mechanics controls differentiation strategy and dynamics of epithelial multilayering
    Article Snippet: Slides were then rinsed in 0.2% Triton X-100/PBS, stained with Cell-ID Intercalator-IR (Fluidigm #201192A) for 30 min at room temperature, washed in Milli-Q water, air-dried for 30 min, and stored until imaging. .. The samples were laser-ablated at 200 Hz using a Hyperion imaging mass cytometry system (Fluidigm) coupled to a Helios time-of-flight mass cytometer with a resolution of 1 μm. .. Slides were then rinsed in 0.2% Triton X-100/PBS, stained with Cell-ID Intercalator-IR (Fluidigm #201192A) for 30 min at room temperature, washed in Milli-Q water, air-dried for 30 min, and stored until imaging.

    Mass Cytometry:

    Article Title: Tissue-scale mechanics controls differentiation strategy and dynamics of epithelial multilayering
    Article Snippet: Slides were then rinsed in 0.2% Triton X-100/PBS, stained with Cell-ID Intercalator-IR (Fluidigm #201192A) for 30 min at room temperature, washed in Milli-Q water, air-dried for 30 min, and stored until imaging. .. The samples were laser-ablated at 200 Hz using a Hyperion imaging mass cytometry system (Fluidigm) coupled to a Helios time-of-flight mass cytometer with a resolution of 1 μm. .. Slides were then rinsed in 0.2% Triton X-100/PBS, stained with Cell-ID Intercalator-IR (Fluidigm #201192A) for 30 min at room temperature, washed in Milli-Q water, air-dried for 30 min, and stored until imaging.

    Article Title: Treg-γδ T cell axis determines sexual dimorphism in hepatocarcinogenesis.
    Article Snippet: .. AR TI CL E IN P RE SS Imaging mass cytometry (IMC) and data processing Hyperion Mass Imaging System (Fluidigm Corporation, CA, USA) was conducted according to the tuning protocol provided by the manufacturer. ..

    Article Title: TERT drives liver tumorigenesis beyond telomere elongation
    Article Snippet: .. Imaging Mass Cytometry (IMC) was performed using the HyperionTM Imaging System (Standard BioTools, USA), a multiplexed spatial proteomics platform that enables simultaneous detection of multiple protein markers at subcellular resolution in formalin-fixed paraffin-embedded (FFPE) tissue sections. ..

    other:

    Article Title: Skin-derived myeloid precursors and joint-resident fibroblasts spread psoriatic disease from skin to joints.
    Article Snippet: Image analysis was performed using image-based algorithms in ImageStream Data Exploration and Analysis Software (IDEAS 6.2.189, Cytek Biosciences).

    Spatial Proteomics:

    Article Title: TERT drives liver tumorigenesis beyond telomere elongation
    Article Snippet: .. Imaging Mass Cytometry (IMC) was performed using the HyperionTM Imaging System (Standard BioTools, USA), a multiplexed spatial proteomics platform that enables simultaneous detection of multiple protein markers at subcellular resolution in formalin-fixed paraffin-embedded (FFPE) tissue sections. ..

    Formalin-fixed Paraffin-Embedded:

    Article Title: TERT drives liver tumorigenesis beyond telomere elongation
    Article Snippet: .. Imaging Mass Cytometry (IMC) was performed using the HyperionTM Imaging System (Standard BioTools, USA), a multiplexed spatial proteomics platform that enables simultaneous detection of multiple protein markers at subcellular resolution in formalin-fixed paraffin-embedded (FFPE) tissue sections. ..



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