bionumerics (Ridom GmbH)
90
Structured Review
Ridom GmbH
bionumerics

Bionumerics, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bionumerics+software+program/bionumerics/pmc08066051-130-3-0
Average 90 stars, based on 1 article reviews

Bionumerics, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bionumerics+software+program/bionumerics/pmc08066051-130-3-0
Average 90 stars, based on 1 article reviews
bionumerics - by Bioz Stars,
2026-09
90/100 stars
Images
1) Product Images from "Multi Locus Sequence Typing and spa Typing of Staphylococcus aureus Isolated from the Milk of Cows with Subclinical Mastitis in Croatia"
Article Title: Multi Locus Sequence Typing and spa Typing of Staphylococcus aureus Isolated from the Milk of Cows with Subclinical Mastitis in Croatia
Journal: Microorganisms
doi: 10.3390/microorganisms9040725
Figure Legend Snippet: Minimum spanning tree of certain spa types according to the county of origin of the samples. This was produced using the spa clustering in BioNumerics software (strains are identified according to spy type (different colours according to the legend) and county in Croatia (BB—Bjelovar-Bilogora county; BP—Brod-Posavina county; CZG—City of Zagreb county; I—Istra county; K—Karlovac County; KK—Koprivnica-Križevci county; KZ—Krapina-Zagorje county; LS—Lika-Senj county; M—Međimurje county; OB—Osijek-Baranja county; PS—Požega-Slavonia county; V—Varaždin county; ZG—Zagreb county; UN—unknown). Branch styles correspond to the relationship between strains (thick solid line for differences up to 2.2; thinner solid line for variations up to 3.4; the thinnest solid line for variations up to 4.59; dashed line for differences up to 5.8; and dotted line for variations above 5.8).
Techniques Used: Produced, Software
Figure Legend Snippet: Minimum spanning tree of certain sequence types (ST) according to the county of origin of the samples It was created using BioNumerics software. Colour coding corresponds to different counties in Croatia (BB—Bjelovar-Bilogora county; BP—Brod-Posavina county; CZG—City of Zagreb county; I—Istra county; K—Karlovac County; KK—Koprivnica-Križevci county; KZ—Krapina-Zagorje county; LS—Lika-Senj county; M—Međimurje county; OB—Osijek-Baranja county; PS—Požega-Slavonia county; SK—Šibenik-Knin county; SM—Sisak-Moslavina county; V—Varaždin county; Z—Zadar county; ZG—Zagreb county). Branch styles correspond to the relationship between strains (thick solid line for one locus variants; thinner solid line for double locus variants; the thinnest solid line for three locus variants; dashed line for four locus variants; and dotted line for five locus variants and above).
Techniques Used: Sequencing, Software
Related Articles
Software:Article Title: Multi Locus Sequence Typing and spa Typing of Staphylococcus aureus Isolated from the Milk of Cows with Subclinical Mastitis in Croatia Article Snippet: Methods: Sequencing amplified gene sequences was conducted at Macrogen Europe. .. Ridom StaphType and Article Title: Make It Less difficile : Understanding Genetic Evolution and Global Spread of Clostridioides difficile Article Snippet: .. Three publicly available schemes for C. difficile are available for cg- and/or wgMLST typing, and analysis can be performed using commercial software (e.g., Article Title: An Open-Source Program (Haplo-ST) for Whole-Genome Sequence Typing Shows Extensive Diversity among Listeria monocytogenes Isolates in Outdoor Environments and Poultry Processing Plants Article Snippet: .. However, larger-scale studies of the extent of genetic variation existing between persistent and transient strains are still needed. fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window FIG 1 caption a7 Haplo-ST, a tool for wgMLST profiling of Listeria monocytogenes from WGS reads. table ft1 table-wrap mode="anchored" t5 TABLE 1 caption a7 Parameter Current wgMLST-based approaches for Article Title: Make It Less difficile : Understanding Genetic Evolution and Global Spread of Clostridioides difficile . Article Snippet: .. Three publicly available schemes for C. difficile are available for cgand/or wgMLST typing, and analysis can be performed using commercial software (e.g., Article Title: An Open-Source Program (Haplo-ST) for Whole-Genome Sequence Typing Shows Extensive Diversity among Listeria monocytogenes Isolates in Outdoor Environments and Poultry Processing Plants Article Snippet: .. 784 Current wgMLST-based approaches for Article Title: Outcome of EC/EFSA questionnaire (2016) on use of Whole Genome Sequencing (WGS) for food‐ and waterborne pathogens isolated from animals, food, feed and related environmental samples in EU/EFTA countries Article Snippet: .. In house developed pipeline/ Commercially available software (e.g. Construct:Article Title: An Open-Source Program (Haplo-ST) for Whole-Genome Sequence Typing Shows Extensive Diversity among Listeria monocytogenes Isolates in Outdoor Environments and Poultry Processing Plants Article Snippet: .. However, larger-scale studies of the extent of genetic variation existing between persistent and transient strains are still needed. fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window FIG 1 caption a7 Haplo-ST, a tool for wgMLST profiling of Listeria monocytogenes from WGS reads. table ft1 table-wrap mode="anchored" t5 TABLE 1 caption a7 Parameter Current wgMLST-based approaches for Article Title: An Open-Source Program (Haplo-ST) for Whole-Genome Sequence Typing Shows Extensive Diversity among Listeria monocytogenes Isolates in Outdoor Environments and Poultry Processing Plants Article Snippet: .. 784 Current wgMLST-based approaches for |