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Genomatix gmbh bioinformatic software matinspector
Bioinformatic Software Matinspector, supplied by Genomatix gmbh, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bioinformatics+software/bioinformatics+software+tool+matinspector/pmc03414764-154-19-27
Average 90 stars, based on 1 article reviews
bioinformatic software matinspector - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

other:

Article Title: Improved drought stress tolerance in Arabidopsis by CRISPR/dCas9 fusion with a Histone AcetylTransferase
Article Snippet: The presence of cis-acting elements in the GmUcesMin promoter was examined using the bioinformatics tool MatInspector version 8.0 (Genomatix®).

Binding Assay:

Article Title: Progesterone regulates the endoplasmic reticulum-associated degradation and Unfolded Protein Response axis by mimicking the androgenic stimulation in prostate cancer cells.
Article Snippet: Background Today, androgen receptor (AR)-mediated signaling mechanisms in prostate cancer are intensively studied.. However, the roles of other steroid hormones in prostate cancer and their effects on androgenic signaling still remain a mystery.. Recent studies focused on the androgen-mediated regulation of protein quality control mechanisms such as endoplasmic reticulum-associated degradation (ERAD) and unfolded protein response (UPR) in prostate cancer cells.

Article Title: Androgen Mediated Regulation of Endoplasmic Reticulum-Associated Degradation and its Effects on Prostate Cancer.
Article Snippet: .. In an effort to find putative binding sites for AR (ARE) we examined the human genomic sequences of ERAD genes tested in this study using in silico MatInspector bioinformatic tool (Genomatix Software, Munich, Germany, http://www.genomatix.de). ..

Article Title: Characterization of the Cytochrome P450 Gene CYP305A1 of the Cotton Aphid (Hemiptera: Aphididae) and Its Responsive Cis-Elements to Plant Allelochemicals.
Article Snippet: Insect cytochrome P450 monooxygenases play an important role in plant allelochemical detoxification.. In this study, a full-length gene CYP305A1 of the P450 Clan 2 family was cloned from Aphis gossypii Glover, and its promoter was identified and characterized.. The transcript level of CYP305A1 and its promoter activity were significantly induced by two plant allelochemicals, gossypol and 2-tridecanone.

Sequencing:

Article Title: Hypoxia-induced long non-coding RNA Malat1 is dispensable for renal ischemia/reperfusion-injury
Article Snippet: .. To identify transcription factors activating Malat1 in response to hypoxia, we employed the Genomatix suite of sequence analysis tool (MatInspector). ..

Mutagenesis:

Article Title: An Elf2-like transcription factor acts as repressor of the mouse ecto-5'-nucleotidase gene expression in hepatic myofibroblasts.
Article Snippet: Plasmid nucleotide sequenceswere confirmed by automated sequencing at the UAMS Sequencing Core Facility using a 3130XL Genetic Analyzer (Applied Biosystems, Foster City, CA). .. Site-directed mutagenesis A putative promoter responsive element formouse Elf2 transcription factorwas identified using the bioinformatics software tool MatInspector (Genomatix GmbH, Munich, Germany), and a fragment lacking such element was generated by site-directed mutagenesis. .. Site-directed mutagenesis was performed using binding site-specific primer sets and the QuikChange II XL kit (Stratagene, La Jolla, CA).

Article Title: An Elf2-like transcription factor acts as repressor of the mouse ecto-5′-nucleotidase gene expression in hepatic myofibroblasts
Article Snippet: Plasmid nucleotide sequences were confirmed by automated sequencing at the UAMS Sequencing Core Facility using a 3130XL Genetic Analyzer (Applied Biosystems, Foster City, CA). .. A putative promoter responsive element for mouse Elf2 transcription factor was identified using the bioinformatics software tool MatInspector (Genomatix GmbH, Munich, Germany), and a fragment lacking such element was generated by site-directed mutagenesis. .. Site-directed mutagenesis was performed using binding site-specific primer sets and the QuikChange II XL kit (Stratagene, La Jolla, CA).

Software:

Article Title: An Elf2-like transcription factor acts as repressor of the mouse ecto-5'-nucleotidase gene expression in hepatic myofibroblasts.
Article Snippet: Plasmid nucleotide sequenceswere confirmed by automated sequencing at the UAMS Sequencing Core Facility using a 3130XL Genetic Analyzer (Applied Biosystems, Foster City, CA). .. Site-directed mutagenesis A putative promoter responsive element formouse Elf2 transcription factorwas identified using the bioinformatics software tool MatInspector (Genomatix GmbH, Munich, Germany), and a fragment lacking such element was generated by site-directed mutagenesis. .. Site-directed mutagenesis was performed using binding site-specific primer sets and the QuikChange II XL kit (Stratagene, La Jolla, CA).

Article Title: An Elf2-like transcription factor acts as repressor of the mouse ecto-5′-nucleotidase gene expression in hepatic myofibroblasts
Article Snippet: Plasmid nucleotide sequences were confirmed by automated sequencing at the UAMS Sequencing Core Facility using a 3130XL Genetic Analyzer (Applied Biosystems, Foster City, CA). .. A putative promoter responsive element for mouse Elf2 transcription factor was identified using the bioinformatics software tool MatInspector (Genomatix GmbH, Munich, Germany), and a fragment lacking such element was generated by site-directed mutagenesis. .. Site-directed mutagenesis was performed using binding site-specific primer sets and the QuikChange II XL kit (Stratagene, La Jolla, CA).

Article Title: Characterization of the Cytochrome P450 Gene CYP305A1 of the Cotton Aphid (Hemiptera: Aphididae) and Its Responsive Cis-Elements to Plant Allelochemicals.
Article Snippet: Insect cytochrome P450 monooxygenases play an important role in plant allelochemical detoxification.. In this study, a full-length gene CYP305A1 of the P450 Clan 2 family was cloned from Aphis gossypii Glover, and its promoter was identified and characterized.. The transcript level of CYP305A1 and its promoter activity were significantly induced by two plant allelochemicals, gossypol and 2-tridecanone.

Generated:

Article Title: An Elf2-like transcription factor acts as repressor of the mouse ecto-5'-nucleotidase gene expression in hepatic myofibroblasts.
Article Snippet: Plasmid nucleotide sequenceswere confirmed by automated sequencing at the UAMS Sequencing Core Facility using a 3130XL Genetic Analyzer (Applied Biosystems, Foster City, CA). .. Site-directed mutagenesis A putative promoter responsive element formouse Elf2 transcription factorwas identified using the bioinformatics software tool MatInspector (Genomatix GmbH, Munich, Germany), and a fragment lacking such element was generated by site-directed mutagenesis. .. Site-directed mutagenesis was performed using binding site-specific primer sets and the QuikChange II XL kit (Stratagene, La Jolla, CA).

Article Title: An Elf2-like transcription factor acts as repressor of the mouse ecto-5′-nucleotidase gene expression in hepatic myofibroblasts
Article Snippet: Plasmid nucleotide sequences were confirmed by automated sequencing at the UAMS Sequencing Core Facility using a 3130XL Genetic Analyzer (Applied Biosystems, Foster City, CA). .. A putative promoter responsive element for mouse Elf2 transcription factor was identified using the bioinformatics software tool MatInspector (Genomatix GmbH, Munich, Germany), and a fragment lacking such element was generated by site-directed mutagenesis. .. Site-directed mutagenesis was performed using binding site-specific primer sets and the QuikChange II XL kit (Stratagene, La Jolla, CA).

Genomic Sequencing:

Article Title: Androgen Mediated Regulation of Endoplasmic Reticulum-Associated Degradation and its Effects on Prostate Cancer.
Article Snippet: .. In an effort to find putative binding sites for AR (ARE) we examined the human genomic sequences of ERAD genes tested in this study using in silico MatInspector bioinformatic tool (Genomatix Software, Munich, Germany, http://www.genomatix.de). ..

In Silico:

Article Title: Androgen Mediated Regulation of Endoplasmic Reticulum-Associated Degradation and its Effects on Prostate Cancer.
Article Snippet: .. In an effort to find putative binding sites for AR (ARE) we examined the human genomic sequences of ERAD genes tested in this study using in silico MatInspector bioinformatic tool (Genomatix Software, Munich, Germany, http://www.genomatix.de). ..



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