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dna binding buffer  (Zymo Research)


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    Structured Review

    Zymo Research dna binding buffer
    Dna Binding Buffer, supplied by Zymo Research, used in various techniques. Bioz Stars score: 96/100, based on 311 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/binding+buffer/DNA+Binding+Buffer/pm41818367-461-27-30
    Average 96 stars, based on 311 article reviews
    dna binding buffer - by Bioz Stars, 2026-11
    96/100 stars

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    Related Articles

    Binding Assay:

    Article Title: First Report of High-Risk Rare blaSIM, blaSPM, and blaGIM Metallo-β-Lactamase Genes in Clinical Pseudomonas aeruginosa Isolates from Nigeria
    Article Snippet: After centrifugation at 10,000 × g for 1 minute, 400 μL of supernatant was transferred to Zymo-Spin IV filters and centrifuged. .. Filtrate was mixed with 1,200 μL of DNA Binding Buffer, transferred to Zymo-Spin IIC columns, and centrifuged. ..

    Article Title: Comparative analysis of stress markers, metabolic health, and gut microbiota in healthy and disabled dogs in long-term shelters in Thailand.
    Article Snippet: Lysates were centrifuged at ≥10,000 × g for 1 minute, and up to 400 μL of supernatant was transferred to a Zymo-SpinTM III-F filter, followed by centrifugation at 8,000 × g for 1 minute. .. The filtrate was mixed with 1,200 μL of DNA binding buffer, and 800 μL of this mixture was applied twice to a Zymo-SpinTM IICR column, each followed by centrifugation at 10,000 × g for 1 minute. ..

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Article Title: Comparative analysis of stress markers, metabolic health, and gut microbiota in healthy and disabled dogs in long-term shelters in Thailand
    Article Snippet: Lysates were centrifuged at ≥10,000 × g for 1 minute, and up to 400 μL of supernatant was transferred to a Zymo-SpinTM III-F filter, followed by centrifugation at 8,000 × g for 1 minute. .. The filtrate was mixed with 1,200 μL of DNA binding buffer, and 800 μL of this mixture was applied twice to a Zymo-SpinTM IICR column, each followed by centrifugation at 10,000 × g for 1 minute. ..

    Article Title: Isolation, molecular profiling and antibiotics resistance of bacterial pathogens from street-vended soymilk
    Article Snippet: .. Supernatant (400 μL) was transferred to a Zymo-SpinTM IV Spin Filter, centrifuged at 7,000 × g for 1 minute, mixed with 1,200 μL DNA Binding Buffer, and applied to a Zymo-SpinTM IIC Column. ..

    Article Title: Evaluating Sequencing Strategies for Endometrial Microbiome Profiling in Endometrial Cancer: A Comparative Study of Short- and Long-Read 16S rRNA Approaches.
    Article Snippet: Genomic DNA was extracted using a ZymoBIOMICS DNA Microprep Kit (Zymo Research), with minor modifications to enhance microbial lysis. .. Briefly, 1 mL of swab/cell lysate (in DNA/RNA shield) was transferred to BashingBead Lysis Tubes and subjected to mechanical disruption using a Disruptor Genie bead beater (Scientific Industries) at maximum speed for 20 min. Lysates were centrifuged at 10 000 × g for 1 min, and 400 μL of supernatant was mixed with DNA Binding Buffer and applied to Zymo- Spin IC Columns. ..

    Article Title: Evaluating Sequencing Strategies for Endometrial Microbiome Profiling in Endometrial Cancer: A Comparative Study of Short‐ and Long‐Read 16S rRNA Approaches
    Article Snippet: Genomic DNA was extracted using a ZymoBIOMICS DNA Microprep Kit (Zymo Research), with minor modifications to enhance microbial lysis. .. Briefly, 1 mL of swab/cell lysate (in DNA/RNA shield) was transferred to BashingBead Lysis Tubes and subjected to mechanical disruption using a Disruptor Genie bead beater (Scientific Industries) at maximum speed for 20 min. Lysates were centrifuged at 10 000 × g for 1 min, and 400 μL of supernatant was mixed with DNA Binding Buffer and applied to Zymo‐Spin IC Columns. ..

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex.
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Centrifugation:

    Article Title: Comparative analysis of stress markers, metabolic health, and gut microbiota in healthy and disabled dogs in long-term shelters in Thailand.
    Article Snippet: Lysates were centrifuged at ≥10,000 × g for 1 minute, and up to 400 μL of supernatant was transferred to a Zymo-SpinTM III-F filter, followed by centrifugation at 8,000 × g for 1 minute. .. The filtrate was mixed with 1,200 μL of DNA binding buffer, and 800 μL of this mixture was applied twice to a Zymo-SpinTM IICR column, each followed by centrifugation at 10,000 × g for 1 minute. ..

    Article Title: Comparative analysis of stress markers, metabolic health, and gut microbiota in healthy and disabled dogs in long-term shelters in Thailand
    Article Snippet: Lysates were centrifuged at ≥10,000 × g for 1 minute, and up to 400 μL of supernatant was transferred to a Zymo-SpinTM III-F filter, followed by centrifugation at 8,000 × g for 1 minute. .. The filtrate was mixed with 1,200 μL of DNA binding buffer, and 800 μL of this mixture was applied twice to a Zymo-SpinTM IICR column, each followed by centrifugation at 10,000 × g for 1 minute. ..

    Purification:

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex.
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Amplification:

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex.
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Polymerase Chain Reaction:

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex.
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Lysis:

    Article Title: Evaluating Sequencing Strategies for Endometrial Microbiome Profiling in Endometrial Cancer: A Comparative Study of Short- and Long-Read 16S rRNA Approaches.
    Article Snippet: Genomic DNA was extracted using a ZymoBIOMICS DNA Microprep Kit (Zymo Research), with minor modifications to enhance microbial lysis. .. Briefly, 1 mL of swab/cell lysate (in DNA/RNA shield) was transferred to BashingBead Lysis Tubes and subjected to mechanical disruption using a Disruptor Genie bead beater (Scientific Industries) at maximum speed for 20 min. Lysates were centrifuged at 10 000 × g for 1 min, and 400 μL of supernatant was mixed with DNA Binding Buffer and applied to Zymo- Spin IC Columns. ..

    Article Title: Evaluating Sequencing Strategies for Endometrial Microbiome Profiling in Endometrial Cancer: A Comparative Study of Short‐ and Long‐Read 16S rRNA Approaches
    Article Snippet: Genomic DNA was extracted using a ZymoBIOMICS DNA Microprep Kit (Zymo Research), with minor modifications to enhance microbial lysis. .. Briefly, 1 mL of swab/cell lysate (in DNA/RNA shield) was transferred to BashingBead Lysis Tubes and subjected to mechanical disruption using a Disruptor Genie bead beater (Scientific Industries) at maximum speed for 20 min. Lysates were centrifuged at 10 000 × g for 1 min, and 400 μL of supernatant was mixed with DNA Binding Buffer and applied to Zymo‐Spin IC Columns. ..

    Disruption:

    Article Title: Evaluating Sequencing Strategies for Endometrial Microbiome Profiling in Endometrial Cancer: A Comparative Study of Short- and Long-Read 16S rRNA Approaches.
    Article Snippet: Genomic DNA was extracted using a ZymoBIOMICS DNA Microprep Kit (Zymo Research), with minor modifications to enhance microbial lysis. .. Briefly, 1 mL of swab/cell lysate (in DNA/RNA shield) was transferred to BashingBead Lysis Tubes and subjected to mechanical disruption using a Disruptor Genie bead beater (Scientific Industries) at maximum speed for 20 min. Lysates were centrifuged at 10 000 × g for 1 min, and 400 μL of supernatant was mixed with DNA Binding Buffer and applied to Zymo- Spin IC Columns. ..

    Article Title: Evaluating Sequencing Strategies for Endometrial Microbiome Profiling in Endometrial Cancer: A Comparative Study of Short‐ and Long‐Read 16S rRNA Approaches
    Article Snippet: Genomic DNA was extracted using a ZymoBIOMICS DNA Microprep Kit (Zymo Research), with minor modifications to enhance microbial lysis. .. Briefly, 1 mL of swab/cell lysate (in DNA/RNA shield) was transferred to BashingBead Lysis Tubes and subjected to mechanical disruption using a Disruptor Genie bead beater (Scientific Industries) at maximum speed for 20 min. Lysates were centrifuged at 10 000 × g for 1 min, and 400 μL of supernatant was mixed with DNA Binding Buffer and applied to Zymo‐Spin IC Columns. ..



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    94
    Qiagen binding buffer xbp
    CRISPR/Cas9 induces DNA damage and apoptosis in PGCs. (A) Flow cytometry analysis 24 h after electroporation, quantifying the proportion of <t>Annexin</t> <t>V</t> + /PI + cells. The horizontal axis indicates PI and the vertical axis Annexin V. The upper-left quadrant (Annexin V + /PI + ) represents late apoptotic cells, and the lower-right quadrant (Annexin V + only) represents early apoptotic cells. Upper panels: results after electroporation with Cas9 + various gRNAs; lower panels: results with dCas9 + various gRNAs. (B) Bar graph of Annexin V + /PI + percentages across groups. Cas9 editing induced a highly significant increase in late apoptosis. (C) γ-H 2 AX foci (green) detected by immunofluorescence 24 h after electroporation. Foci appear as discrete nuclear puncta; nuclei are counterstained with DAPI (blue). Scale bar = 10 µm. (D) Quantification of γ-H 2 AX foci per cell. Cas9 targeting resulted in a significant increase in γ-H 2 AX foci per cell, whereas dCas9 with sgRNA did not. Statistical significance determined by one-way ANOVA (p-values are indicated in the figure).
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    ( A ) Immunoblotting of SIINFEKL peptide–pulsed Neuro2a cell lines cocultured with activated OT-I T cells for 4 hours at ratios of T cells to target cells indicated. ( B ) Schematic representation of fluorescence-activated cell sorting (FACS) based on Caspase-3(DEVD)NucView and annexin V (AnnV) staining, applies to (C) to (E). Created in BioRender; B. Liu (2026), https://BioRender.com/y3nlv0g . ( C ) Rate of outgrowth from cells recovered from FACS sort, calculated on the basis of number of initially plated cells. Data were compiled from five independent experiments. Paired t test. ( D and E ) Quantification of nucleotide fragments with greater than three, four, five, or six single-nucleotide variants (SNVs) from various recovered populations as indicated. ( F ) The design of the ATM–fluorescence resonance energy transfer (FRET) reporter. Created in BioRender; B. Liu (2026), https://BioRender.com/jqdhdx7 . ( G ) Quantification of FRET loss signal from Neuro2a expressing the ATM-FRET reporter shown in (F). Neuro2a cells were SIINFEKL peptide pulsed and then coincubated with OT-I T cells for 6 hours at 10:1 T cell–to–target cell ratio. Data were pooled from three independent experiments. Unpaired t test. ( H ) In vivo growth of Neuro2a cells expressing the ATM-FRET sensor. ATM-FRET loss populations were sorted post BH3m treatment (1 μM ABT737 and 1 μM S63845 ). Cells were sorted for FRET-loss population at 2.5 hours, and 1 × 10 4 cells were injected into NSG mice ( n = 5 animals per group). Kaplan-Meyer survival curves. WT-base and GE KO–base refer to ATM-FRET–expressing cells that were not treated with BH3m. Log-rank (Mantel-Cox) test. * P < 0.05 and **** P < 0.0001. C3, active caspase-3.

    Journal: Science Advances

    Article Title: Tumor gasdermin E acts as a rheostat to limit apoptotic cell survival and mutagenesis in anticancer immune environments

    doi: 10.1126/sciadv.aeb1137

    Figure Lengend Snippet: ( A ) Immunoblotting of SIINFEKL peptide–pulsed Neuro2a cell lines cocultured with activated OT-I T cells for 4 hours at ratios of T cells to target cells indicated. ( B ) Schematic representation of fluorescence-activated cell sorting (FACS) based on Caspase-3(DEVD)NucView and annexin V (AnnV) staining, applies to (C) to (E). Created in BioRender; B. Liu (2026), https://BioRender.com/y3nlv0g . ( C ) Rate of outgrowth from cells recovered from FACS sort, calculated on the basis of number of initially plated cells. Data were compiled from five independent experiments. Paired t test. ( D and E ) Quantification of nucleotide fragments with greater than three, four, five, or six single-nucleotide variants (SNVs) from various recovered populations as indicated. ( F ) The design of the ATM–fluorescence resonance energy transfer (FRET) reporter. Created in BioRender; B. Liu (2026), https://BioRender.com/jqdhdx7 . ( G ) Quantification of FRET loss signal from Neuro2a expressing the ATM-FRET reporter shown in (F). Neuro2a cells were SIINFEKL peptide pulsed and then coincubated with OT-I T cells for 6 hours at 10:1 T cell–to–target cell ratio. Data were pooled from three independent experiments. Unpaired t test. ( H ) In vivo growth of Neuro2a cells expressing the ATM-FRET sensor. ATM-FRET loss populations were sorted post BH3m treatment (1 μM ABT737 and 1 μM S63845 ). Cells were sorted for FRET-loss population at 2.5 hours, and 1 × 10 4 cells were injected into NSG mice ( n = 5 animals per group). Kaplan-Meyer survival curves. WT-base and GE KO–base refer to ATM-FRET–expressing cells that were not treated with BH3m. Log-rank (Mantel-Cox) test. * P < 0.05 and **** P < 0.0001. C3, active caspase-3.

    Article Snippet: Cells were spun down and resuspended in DMEM supplemented with annexin binding buffer (99902, Biotium) and stained with annexin V-647 and/or Caspase-3(DEVD)NucView-488, as indicated in the text, for 10 min at 37°C.

    Techniques: Western Blot, Fluorescence, FACS, Staining, Förster Resonance Energy Transfer, Expressing, In Vivo, Injection

    ( A ) Coculture (1:1) of parental B16F10 cells expressing pBabe-Cerulean (blue) and B16F10 cells expressing GsdmD-C3 and mCherry (red) (see movie S1). ( B ) Times of individual cell shrinkage and cell membrane lysis, as in (A). Unpaired t test. ( C ) Apoptotic phase (shrinkage-lysis interval) from (B). One-way ANOVA. ( D ) Quantification of annexin V + SIINFEKL peptide–pulsed B16F10 [as in (B) and (C)] that remains fluorescent when coincubated with activated OT-I T cells at 4 hours. Two-way ANOVA. ( E ) Quantification of SIINFEKL peptide–pulsed B16F10 cell populations with ectopic caspase-3-activatable GSDMD (GD-C3) by fluorescence signal at 24 hours of coincubation with activated OT-I T cells. ( F ) As in (E) with Gsdme. [(E) and (F)] Paired t test. ( G ) Number of GCamp6s spikes observed from SIINFEKL peptide–pulsed Neuro2a cells, coincubated with activated OT-I T cells, 10:1 T cell–to–target cell ratio. Images were taken every 2 min for a duration of 3 hours immediately following the additional of OT-I T cells, and numbers of observable GCamp6s spikes were counted and plotted (see movies S2 to S4 and fig. S5C). Unpaired t test. ( H ) Design for (I) and (J). Created in BioRender; B. Liu (2026), https://BioRender.com/j67ipmw . ( I ) Bioluminescence signal intensity of Neuro2a in C57BL/6 animals ( n = 9 animals per group). Two-way ANOVA. ( J ) Kaplan-Meyer survival curves from C57BL/6 mice injected with Neuro2a cells ( n = 9 animals per group). ( K ) Design for (L). Created in BioRender; B. Liu (2026), https://BioRender.com/j67ipmw . ( L ) Bioluminescence signal intensity of Neuro2a in C57BL/6 animals (control, n = 9 animals; Gsdme −/− , n = 8 animals). ( M ) Kaplan-Meyer survival curves from C57BL/6 mice rechallenged with Neuro2a cells [ n = 5 animals per group; log-rank (Mantel-Cox) test]. ( N ) As in (M) with B16F10 [ n = 12 animals in naïve group, 14 animals in rechallenge group; log-rank (Mantel-Cox) test]. * P < 0.05, ** P < 0.01, and **** P < 0.0001. iv, intravenous; ip, intraperitoneal.

    Journal: Science Advances

    Article Title: Tumor gasdermin E acts as a rheostat to limit apoptotic cell survival and mutagenesis in anticancer immune environments

    doi: 10.1126/sciadv.aeb1137

    Figure Lengend Snippet: ( A ) Coculture (1:1) of parental B16F10 cells expressing pBabe-Cerulean (blue) and B16F10 cells expressing GsdmD-C3 and mCherry (red) (see movie S1). ( B ) Times of individual cell shrinkage and cell membrane lysis, as in (A). Unpaired t test. ( C ) Apoptotic phase (shrinkage-lysis interval) from (B). One-way ANOVA. ( D ) Quantification of annexin V + SIINFEKL peptide–pulsed B16F10 [as in (B) and (C)] that remains fluorescent when coincubated with activated OT-I T cells at 4 hours. Two-way ANOVA. ( E ) Quantification of SIINFEKL peptide–pulsed B16F10 cell populations with ectopic caspase-3-activatable GSDMD (GD-C3) by fluorescence signal at 24 hours of coincubation with activated OT-I T cells. ( F ) As in (E) with Gsdme. [(E) and (F)] Paired t test. ( G ) Number of GCamp6s spikes observed from SIINFEKL peptide–pulsed Neuro2a cells, coincubated with activated OT-I T cells, 10:1 T cell–to–target cell ratio. Images were taken every 2 min for a duration of 3 hours immediately following the additional of OT-I T cells, and numbers of observable GCamp6s spikes were counted and plotted (see movies S2 to S4 and fig. S5C). Unpaired t test. ( H ) Design for (I) and (J). Created in BioRender; B. Liu (2026), https://BioRender.com/j67ipmw . ( I ) Bioluminescence signal intensity of Neuro2a in C57BL/6 animals ( n = 9 animals per group). Two-way ANOVA. ( J ) Kaplan-Meyer survival curves from C57BL/6 mice injected with Neuro2a cells ( n = 9 animals per group). ( K ) Design for (L). Created in BioRender; B. Liu (2026), https://BioRender.com/j67ipmw . ( L ) Bioluminescence signal intensity of Neuro2a in C57BL/6 animals (control, n = 9 animals; Gsdme −/− , n = 8 animals). ( M ) Kaplan-Meyer survival curves from C57BL/6 mice rechallenged with Neuro2a cells [ n = 5 animals per group; log-rank (Mantel-Cox) test]. ( N ) As in (M) with B16F10 [ n = 12 animals in naïve group, 14 animals in rechallenge group; log-rank (Mantel-Cox) test]. * P < 0.05, ** P < 0.01, and **** P < 0.0001. iv, intravenous; ip, intraperitoneal.

    Article Snippet: Cells were spun down and resuspended in DMEM supplemented with annexin binding buffer (99902, Biotium) and stained with annexin V-647 and/or Caspase-3(DEVD)NucView-488, as indicated in the text, for 10 min at 37°C.

    Techniques: Expressing, Membrane, Lysis, Fluorescence, Injection, Control

    CRISPR/Cas9 induces DNA damage and apoptosis in PGCs. (A) Flow cytometry analysis 24 h after electroporation, quantifying the proportion of Annexin V + /PI + cells. The horizontal axis indicates PI and the vertical axis Annexin V. The upper-left quadrant (Annexin V + /PI + ) represents late apoptotic cells, and the lower-right quadrant (Annexin V + only) represents early apoptotic cells. Upper panels: results after electroporation with Cas9 + various gRNAs; lower panels: results with dCas9 + various gRNAs. (B) Bar graph of Annexin V + /PI + percentages across groups. Cas9 editing induced a highly significant increase in late apoptosis. (C) γ-H 2 AX foci (green) detected by immunofluorescence 24 h after electroporation. Foci appear as discrete nuclear puncta; nuclei are counterstained with DAPI (blue). Scale bar = 10 µm. (D) Quantification of γ-H 2 AX foci per cell. Cas9 targeting resulted in a significant increase in γ-H 2 AX foci per cell, whereas dCas9 with sgRNA did not. Statistical significance determined by one-way ANOVA (p-values are indicated in the figure).

    Journal: Poultry Science

    Article Title: High genotoxicity of CRISPR/Cas9 versus limited efficacy of CRISPRi in chicken primordial germ cells

    doi: 10.1016/j.psj.2026.106722

    Figure Lengend Snippet: CRISPR/Cas9 induces DNA damage and apoptosis in PGCs. (A) Flow cytometry analysis 24 h after electroporation, quantifying the proportion of Annexin V + /PI + cells. The horizontal axis indicates PI and the vertical axis Annexin V. The upper-left quadrant (Annexin V + /PI + ) represents late apoptotic cells, and the lower-right quadrant (Annexin V + only) represents early apoptotic cells. Upper panels: results after electroporation with Cas9 + various gRNAs; lower panels: results with dCas9 + various gRNAs. (B) Bar graph of Annexin V + /PI + percentages across groups. Cas9 editing induced a highly significant increase in late apoptosis. (C) γ-H 2 AX foci (green) detected by immunofluorescence 24 h after electroporation. Foci appear as discrete nuclear puncta; nuclei are counterstained with DAPI (blue). Scale bar = 10 µm. (D) Quantification of γ-H 2 AX foci per cell. Cas9 targeting resulted in a significant increase in γ-H 2 AX foci per cell, whereas dCas9 with sgRNA did not. Statistical significance determined by one-way ANOVA (p-values are indicated in the figure).

    Article Snippet: After another centrifugation, the supernatant was removed and cells were resuspended in 500 μL of 1× Annexin V Binding Buffer (from Annexin V-FITC/PI Apoptosis Kit, Elabscience E-CK-A211).

    Techniques: CRISPR, Flow Cytometry, Electroporation, Immunofluorescence

    PGCs are more sensitive to DNA double-strand breaks than somatic cells. (A) Cell viability curves after 24 h treatment with increasing concentrations of etoposide (ETP; x-axis shows log 10 [ETP]). PGC viability dropped sharply even at low ETP doses, whereas CEF cells were more tolerant (viability data are mean ± SD of triplicates). (B) Apoptosis detection in PGCs treated with low-dose ETP. The proportion of Annexin V + /PI + cells (late apoptosis) was significantly elevated even at 0.03 µM ETP. (C) Western blot analysis of γ-H 2 AX protein in PGCs treated with varying ETP concentrations (left panel; β-actin as loading control). The bar graph (right) shows the ratio of γ-H 2 AX to β-actin band intensity, with a marked increase at 3 µM ETP (p-values are indicated in the figure). (D) Quantification of γ-H 2 AX foci per cell in THP-1 cells, male PGCs, and female PGCs after exposure to X-ray doses of 0, 2, 4, 6, and 8 Gy. After 48 h recovery, γ-H 2 AX foci increased significantly with higher radiation in THP-1, male PGCs, and female PGCs. Female PGC data points are red squares; male PGCs are blue squares; THP-1 are black circles. (E) Cell-cycle distribution of male vs. female PGCs after DNA damage. PGCs were irradiated (2, 4, 6 Gy), cultured 48 h, and analyzed by flow cytometry for cell-cycle phase (propidium iodide staining). Stacked bars show the percentage of cells in G 0 G 1 , S, and G 2 /M phases in untreated vs. irradiated cells. After damage, female PGCs predominantly arrested in G 2 /M (increased G 2 fraction), whereas male PGCs accumulated in S phase. Statistical significance by one-way ANOVA (p-values are indicated in the figure).

    Journal: Poultry Science

    Article Title: High genotoxicity of CRISPR/Cas9 versus limited efficacy of CRISPRi in chicken primordial germ cells

    doi: 10.1016/j.psj.2026.106722

    Figure Lengend Snippet: PGCs are more sensitive to DNA double-strand breaks than somatic cells. (A) Cell viability curves after 24 h treatment with increasing concentrations of etoposide (ETP; x-axis shows log 10 [ETP]). PGC viability dropped sharply even at low ETP doses, whereas CEF cells were more tolerant (viability data are mean ± SD of triplicates). (B) Apoptosis detection in PGCs treated with low-dose ETP. The proportion of Annexin V + /PI + cells (late apoptosis) was significantly elevated even at 0.03 µM ETP. (C) Western blot analysis of γ-H 2 AX protein in PGCs treated with varying ETP concentrations (left panel; β-actin as loading control). The bar graph (right) shows the ratio of γ-H 2 AX to β-actin band intensity, with a marked increase at 3 µM ETP (p-values are indicated in the figure). (D) Quantification of γ-H 2 AX foci per cell in THP-1 cells, male PGCs, and female PGCs after exposure to X-ray doses of 0, 2, 4, 6, and 8 Gy. After 48 h recovery, γ-H 2 AX foci increased significantly with higher radiation in THP-1, male PGCs, and female PGCs. Female PGC data points are red squares; male PGCs are blue squares; THP-1 are black circles. (E) Cell-cycle distribution of male vs. female PGCs after DNA damage. PGCs were irradiated (2, 4, 6 Gy), cultured 48 h, and analyzed by flow cytometry for cell-cycle phase (propidium iodide staining). Stacked bars show the percentage of cells in G 0 G 1 , S, and G 2 /M phases in untreated vs. irradiated cells. After damage, female PGCs predominantly arrested in G 2 /M (increased G 2 fraction), whereas male PGCs accumulated in S phase. Statistical significance by one-way ANOVA (p-values are indicated in the figure).

    Article Snippet: After another centrifugation, the supernatant was removed and cells were resuspended in 500 μL of 1× Annexin V Binding Buffer (from Annexin V-FITC/PI Apoptosis Kit, Elabscience E-CK-A211).

    Techniques: Western Blot, Control, Irradiation, Cell Culture, Flow Cytometry, Staining