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dna binding buffer  (Zymo Research)


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    Structured Review

    Zymo Research dna binding buffer
    Dna Binding Buffer, supplied by Zymo Research, used in various techniques. Bioz Stars score: 96/100, based on 308 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/binding+buffer/DNA+Binding+Buffer/pm41818367-461-27-30
    Average 96 stars, based on 308 article reviews
    dna binding buffer - by Bioz Stars, 2026-09
    96/100 stars

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    Related Articles

    Binding Assay:

    Article Title: First Report of High-Risk Rare blaSIM, blaSPM, and blaGIM Metallo-β-Lactamase Genes in Clinical Pseudomonas aeruginosa Isolates from Nigeria
    Article Snippet: After centrifugation at 10,000 × g for 1 minute, 400 μL of supernatant was transferred to Zymo-Spin IV filters and centrifuged. .. Filtrate was mixed with 1,200 μL of DNA Binding Buffer, transferred to Zymo-Spin IIC columns, and centrifuged. ..

    Article Title: Comparative analysis of stress markers, metabolic health, and gut microbiota in healthy and disabled dogs in long-term shelters in Thailand.
    Article Snippet: Lysates were centrifuged at ≥10,000 × g for 1 minute, and up to 400 μL of supernatant was transferred to a Zymo-SpinTM III-F filter, followed by centrifugation at 8,000 × g for 1 minute. .. The filtrate was mixed with 1,200 μL of DNA binding buffer, and 800 μL of this mixture was applied twice to a Zymo-SpinTM IICR column, each followed by centrifugation at 10,000 × g for 1 minute. ..

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Article Title: Comparative analysis of stress markers, metabolic health, and gut microbiota in healthy and disabled dogs in long-term shelters in Thailand
    Article Snippet: Lysates were centrifuged at ≥10,000 × g for 1 minute, and up to 400 μL of supernatant was transferred to a Zymo-SpinTM III-F filter, followed by centrifugation at 8,000 × g for 1 minute. .. The filtrate was mixed with 1,200 μL of DNA binding buffer, and 800 μL of this mixture was applied twice to a Zymo-SpinTM IICR column, each followed by centrifugation at 10,000 × g for 1 minute. ..

    Article Title: Isolation, molecular profiling and antibiotics resistance of bacterial pathogens from street-vended soymilk
    Article Snippet: .. Supernatant (400 μL) was transferred to a Zymo-SpinTM IV Spin Filter, centrifuged at 7,000 × g for 1 minute, mixed with 1,200 μL DNA Binding Buffer, and applied to a Zymo-SpinTM IIC Column. ..

    Article Title: Evaluating Sequencing Strategies for Endometrial Microbiome Profiling in Endometrial Cancer: A Comparative Study of Short- and Long-Read 16S rRNA Approaches.
    Article Snippet: Genomic DNA was extracted using a ZymoBIOMICS DNA Microprep Kit (Zymo Research), with minor modifications to enhance microbial lysis. .. Briefly, 1 mL of swab/cell lysate (in DNA/RNA shield) was transferred to BashingBead Lysis Tubes and subjected to mechanical disruption using a Disruptor Genie bead beater (Scientific Industries) at maximum speed for 20 min. Lysates were centrifuged at 10 000 × g for 1 min, and 400 μL of supernatant was mixed with DNA Binding Buffer and applied to Zymo- Spin IC Columns. ..

    Article Title: Evaluating Sequencing Strategies for Endometrial Microbiome Profiling in Endometrial Cancer: A Comparative Study of Short‐ and Long‐Read 16S rRNA Approaches
    Article Snippet: Genomic DNA was extracted using a ZymoBIOMICS DNA Microprep Kit (Zymo Research), with minor modifications to enhance microbial lysis. .. Briefly, 1 mL of swab/cell lysate (in DNA/RNA shield) was transferred to BashingBead Lysis Tubes and subjected to mechanical disruption using a Disruptor Genie bead beater (Scientific Industries) at maximum speed for 20 min. Lysates were centrifuged at 10 000 × g for 1 min, and 400 μL of supernatant was mixed with DNA Binding Buffer and applied to Zymo‐Spin IC Columns. ..

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex.
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Centrifugation:

    Article Title: Comparative analysis of stress markers, metabolic health, and gut microbiota in healthy and disabled dogs in long-term shelters in Thailand.
    Article Snippet: Lysates were centrifuged at ≥10,000 × g for 1 minute, and up to 400 μL of supernatant was transferred to a Zymo-SpinTM III-F filter, followed by centrifugation at 8,000 × g for 1 minute. .. The filtrate was mixed with 1,200 μL of DNA binding buffer, and 800 μL of this mixture was applied twice to a Zymo-SpinTM IICR column, each followed by centrifugation at 10,000 × g for 1 minute. ..

    Article Title: Comparative analysis of stress markers, metabolic health, and gut microbiota in healthy and disabled dogs in long-term shelters in Thailand
    Article Snippet: Lysates were centrifuged at ≥10,000 × g for 1 minute, and up to 400 μL of supernatant was transferred to a Zymo-SpinTM III-F filter, followed by centrifugation at 8,000 × g for 1 minute. .. The filtrate was mixed with 1,200 μL of DNA binding buffer, and 800 μL of this mixture was applied twice to a Zymo-SpinTM IICR column, each followed by centrifugation at 10,000 × g for 1 minute. ..

    Purification:

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex.
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Amplification:

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex.
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Polymerase Chain Reaction:

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Article Title: Prion propagation is controlled by a hierarchical network involving the nuclear Tfap2c and hnRNP K factors and the cytosolic mTORC1 complex.
    Article Snippet: .. For the purification of the amplified product, the PCR reaction was mixed with five volumes of DNA Binding Buffer (Zymo Research), transferred into the Zymo-Spin V column with Reservoir (Zymo Research), and centrifuged at 500 RCF for 5 minutes at room temperature. .. The column was washed twice with 2 ml DNA Wash Buffer (Zymo Research) by a second step of centrifugation.

    Lysis:

    Article Title: Evaluating Sequencing Strategies for Endometrial Microbiome Profiling in Endometrial Cancer: A Comparative Study of Short- and Long-Read 16S rRNA Approaches.
    Article Snippet: Genomic DNA was extracted using a ZymoBIOMICS DNA Microprep Kit (Zymo Research), with minor modifications to enhance microbial lysis. .. Briefly, 1 mL of swab/cell lysate (in DNA/RNA shield) was transferred to BashingBead Lysis Tubes and subjected to mechanical disruption using a Disruptor Genie bead beater (Scientific Industries) at maximum speed for 20 min. Lysates were centrifuged at 10 000 × g for 1 min, and 400 μL of supernatant was mixed with DNA Binding Buffer and applied to Zymo- Spin IC Columns. ..

    Article Title: Evaluating Sequencing Strategies for Endometrial Microbiome Profiling in Endometrial Cancer: A Comparative Study of Short‐ and Long‐Read 16S rRNA Approaches
    Article Snippet: Genomic DNA was extracted using a ZymoBIOMICS DNA Microprep Kit (Zymo Research), with minor modifications to enhance microbial lysis. .. Briefly, 1 mL of swab/cell lysate (in DNA/RNA shield) was transferred to BashingBead Lysis Tubes and subjected to mechanical disruption using a Disruptor Genie bead beater (Scientific Industries) at maximum speed for 20 min. Lysates were centrifuged at 10 000 × g for 1 min, and 400 μL of supernatant was mixed with DNA Binding Buffer and applied to Zymo‐Spin IC Columns. ..

    Disruption:

    Article Title: Evaluating Sequencing Strategies for Endometrial Microbiome Profiling in Endometrial Cancer: A Comparative Study of Short- and Long-Read 16S rRNA Approaches.
    Article Snippet: Genomic DNA was extracted using a ZymoBIOMICS DNA Microprep Kit (Zymo Research), with minor modifications to enhance microbial lysis. .. Briefly, 1 mL of swab/cell lysate (in DNA/RNA shield) was transferred to BashingBead Lysis Tubes and subjected to mechanical disruption using a Disruptor Genie bead beater (Scientific Industries) at maximum speed for 20 min. Lysates were centrifuged at 10 000 × g for 1 min, and 400 μL of supernatant was mixed with DNA Binding Buffer and applied to Zymo- Spin IC Columns. ..

    Article Title: Evaluating Sequencing Strategies for Endometrial Microbiome Profiling in Endometrial Cancer: A Comparative Study of Short‐ and Long‐Read 16S rRNA Approaches
    Article Snippet: Genomic DNA was extracted using a ZymoBIOMICS DNA Microprep Kit (Zymo Research), with minor modifications to enhance microbial lysis. .. Briefly, 1 mL of swab/cell lysate (in DNA/RNA shield) was transferred to BashingBead Lysis Tubes and subjected to mechanical disruption using a Disruptor Genie bead beater (Scientific Industries) at maximum speed for 20 min. Lysates were centrifuged at 10 000 × g for 1 min, and 400 μL of supernatant was mixed with DNA Binding Buffer and applied to Zymo‐Spin IC Columns. ..



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    Image Search Results


    CRISPR/Cas9 induces DNA damage and apoptosis in PGCs. (A) Flow cytometry analysis 24 h after electroporation, quantifying the proportion of Annexin V + /PI + cells. The horizontal axis indicates PI and the vertical axis Annexin V. The upper-left quadrant (Annexin V + /PI + ) represents late apoptotic cells, and the lower-right quadrant (Annexin V + only) represents early apoptotic cells. Upper panels: results after electroporation with Cas9 + various gRNAs; lower panels: results with dCas9 + various gRNAs. (B) Bar graph of Annexin V + /PI + percentages across groups. Cas9 editing induced a highly significant increase in late apoptosis. (C) γ-H 2 AX foci (green) detected by immunofluorescence 24 h after electroporation. Foci appear as discrete nuclear puncta; nuclei are counterstained with DAPI (blue). Scale bar = 10 µm. (D) Quantification of γ-H 2 AX foci per cell. Cas9 targeting resulted in a significant increase in γ-H 2 AX foci per cell, whereas dCas9 with sgRNA did not. Statistical significance determined by one-way ANOVA (p-values are indicated in the figure).

    Journal: Poultry Science

    Article Title: High genotoxicity of CRISPR/Cas9 versus limited efficacy of CRISPRi in chicken primordial germ cells

    doi: 10.1016/j.psj.2026.106722

    Figure Lengend Snippet: CRISPR/Cas9 induces DNA damage and apoptosis in PGCs. (A) Flow cytometry analysis 24 h after electroporation, quantifying the proportion of Annexin V + /PI + cells. The horizontal axis indicates PI and the vertical axis Annexin V. The upper-left quadrant (Annexin V + /PI + ) represents late apoptotic cells, and the lower-right quadrant (Annexin V + only) represents early apoptotic cells. Upper panels: results after electroporation with Cas9 + various gRNAs; lower panels: results with dCas9 + various gRNAs. (B) Bar graph of Annexin V + /PI + percentages across groups. Cas9 editing induced a highly significant increase in late apoptosis. (C) γ-H 2 AX foci (green) detected by immunofluorescence 24 h after electroporation. Foci appear as discrete nuclear puncta; nuclei are counterstained with DAPI (blue). Scale bar = 10 µm. (D) Quantification of γ-H 2 AX foci per cell. Cas9 targeting resulted in a significant increase in γ-H 2 AX foci per cell, whereas dCas9 with sgRNA did not. Statistical significance determined by one-way ANOVA (p-values are indicated in the figure).

    Article Snippet: After another centrifugation, the supernatant was removed and cells were resuspended in 500 μL of 1× Annexin V Binding Buffer (from Annexin V-FITC/PI Apoptosis Kit, Elabscience E-CK-A211).

    Techniques: CRISPR, Flow Cytometry, Electroporation, Immunofluorescence

    PGCs are more sensitive to DNA double-strand breaks than somatic cells. (A) Cell viability curves after 24 h treatment with increasing concentrations of etoposide (ETP; x-axis shows log 10 [ETP]). PGC viability dropped sharply even at low ETP doses, whereas CEF cells were more tolerant (viability data are mean ± SD of triplicates). (B) Apoptosis detection in PGCs treated with low-dose ETP. The proportion of Annexin V + /PI + cells (late apoptosis) was significantly elevated even at 0.03 µM ETP. (C) Western blot analysis of γ-H 2 AX protein in PGCs treated with varying ETP concentrations (left panel; β-actin as loading control). The bar graph (right) shows the ratio of γ-H 2 AX to β-actin band intensity, with a marked increase at 3 µM ETP (p-values are indicated in the figure). (D) Quantification of γ-H 2 AX foci per cell in THP-1 cells, male PGCs, and female PGCs after exposure to X-ray doses of 0, 2, 4, 6, and 8 Gy. After 48 h recovery, γ-H 2 AX foci increased significantly with higher radiation in THP-1, male PGCs, and female PGCs. Female PGC data points are red squares; male PGCs are blue squares; THP-1 are black circles. (E) Cell-cycle distribution of male vs. female PGCs after DNA damage. PGCs were irradiated (2, 4, 6 Gy), cultured 48 h, and analyzed by flow cytometry for cell-cycle phase (propidium iodide staining). Stacked bars show the percentage of cells in G 0 G 1 , S, and G 2 /M phases in untreated vs. irradiated cells. After damage, female PGCs predominantly arrested in G 2 /M (increased G 2 fraction), whereas male PGCs accumulated in S phase. Statistical significance by one-way ANOVA (p-values are indicated in the figure).

    Journal: Poultry Science

    Article Title: High genotoxicity of CRISPR/Cas9 versus limited efficacy of CRISPRi in chicken primordial germ cells

    doi: 10.1016/j.psj.2026.106722

    Figure Lengend Snippet: PGCs are more sensitive to DNA double-strand breaks than somatic cells. (A) Cell viability curves after 24 h treatment with increasing concentrations of etoposide (ETP; x-axis shows log 10 [ETP]). PGC viability dropped sharply even at low ETP doses, whereas CEF cells were more tolerant (viability data are mean ± SD of triplicates). (B) Apoptosis detection in PGCs treated with low-dose ETP. The proportion of Annexin V + /PI + cells (late apoptosis) was significantly elevated even at 0.03 µM ETP. (C) Western blot analysis of γ-H 2 AX protein in PGCs treated with varying ETP concentrations (left panel; β-actin as loading control). The bar graph (right) shows the ratio of γ-H 2 AX to β-actin band intensity, with a marked increase at 3 µM ETP (p-values are indicated in the figure). (D) Quantification of γ-H 2 AX foci per cell in THP-1 cells, male PGCs, and female PGCs after exposure to X-ray doses of 0, 2, 4, 6, and 8 Gy. After 48 h recovery, γ-H 2 AX foci increased significantly with higher radiation in THP-1, male PGCs, and female PGCs. Female PGC data points are red squares; male PGCs are blue squares; THP-1 are black circles. (E) Cell-cycle distribution of male vs. female PGCs after DNA damage. PGCs were irradiated (2, 4, 6 Gy), cultured 48 h, and analyzed by flow cytometry for cell-cycle phase (propidium iodide staining). Stacked bars show the percentage of cells in G 0 G 1 , S, and G 2 /M phases in untreated vs. irradiated cells. After damage, female PGCs predominantly arrested in G 2 /M (increased G 2 fraction), whereas male PGCs accumulated in S phase. Statistical significance by one-way ANOVA (p-values are indicated in the figure).

    Article Snippet: After another centrifugation, the supernatant was removed and cells were resuspended in 500 μL of 1× Annexin V Binding Buffer (from Annexin V-FITC/PI Apoptosis Kit, Elabscience E-CK-A211).

    Techniques: Western Blot, Control, Irradiation, Cell Culture, Flow Cytometry, Staining