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bgi stomics cloud  (Complete Genomics Inc)


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    Complete Genomics Inc bgi stomics cloud
    Bgi Stomics Cloud, supplied by Complete Genomics Inc, used in various techniques. Bioz Stars score: 99/100, based on 472 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/bgi+stomics/Stereo-seq+Transcriptomics+Set+for+FFPE/pm41896208-502-7-8
    Average 99 stars, based on 472 article reviews
    bgi stomics cloud - by Bioz Stars, 2026-10
    99/100 stars

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    Related Articles

    Transcriptomics:

    Article Title: A spatial code governs olfactory receptor choice and aligns sensory maps in the nose and brain
    Article Snippet: MERSCOPE Cell Boundary Staining Kit , Vizgen , Cat# 10400118. .. Stereo-seq Transcriptomics T kit v1.3 , STOmics , Cat# 211KT13114-CG. .. Stereo-seq 16 Barcode Library Preparation Kit , STOmics , Cat # 111KL160-CG.

    Expressing:

    Article Title: Functional and Genetic Analyses Unveil the Implication of hoxa4a in Zebrafish Craniofacial Development
    Article Snippet: .. Analysis of hoxa4a expression patterns during early zebrafish embryogenesis was conducted using the Spatial Transcript Omics Database (STOmics DB) [20], incorporating both single-cell RNA sequencing (scRNA-seq) and spatial transcriptomic (stereo-seq) datasets. ..

    Single Cell:

    Article Title: Functional and Genetic Analyses Unveil the Implication of hoxa4a in Zebrafish Craniofacial Development
    Article Snippet: .. Analysis of hoxa4a expression patterns during early zebrafish embryogenesis was conducted using the Spatial Transcript Omics Database (STOmics DB) [20], incorporating both single-cell RNA sequencing (scRNA-seq) and spatial transcriptomic (stereo-seq) datasets. ..

    RNA Sequencing:

    Article Title: Functional and Genetic Analyses Unveil the Implication of hoxa4a in Zebrafish Craniofacial Development
    Article Snippet: .. Analysis of hoxa4a expression patterns during early zebrafish embryogenesis was conducted using the Spatial Transcript Omics Database (STOmics DB) [20], incorporating both single-cell RNA sequencing (scRNA-seq) and spatial transcriptomic (stereo-seq) datasets. ..

    other:

    Article Title: Artificial Intelligence in Transcriptomics: From Human-in-the-Loop to Agentic AI.
    Article Snippet: Abbreviations: Serial Analysis of Gene Expression (SAGE); Expressed Sequence Tag (EST); In Situ Hybridization (ISH); Gene Expression Omnibus (GEO); Database for Gene Expression Evolution (Bgee); Sequence Read Archive (SRA); SPAtial transcriptomics annotation at Single-CEll Resolution (SPASCER); Panglao Database (PanglaoDB); Cancer Genome Anatomy Project (CGAP) uses SAGE; Human Cell Landscape (HCL); Genomic Data Commons (GDC) Data Portal; The Cancer Genome Atlas (TCGA); CellMiner Cross-DataBase (CDB); Chinese Glioma Genome Atlas (CGGA); IVY Glioblastoma Atlas Project (GAP); Open Pediatric Brain Tumor Atlas (OpenPBTA); Open Pediatric Cancer (OpenPedCan) Project; Single-Cell Pediatric Cancer Atlas (ScPCA); The Spinal Cord Injury (SCI) Myeloid Cell Atlas; Spatio-Temporal Cell Atlas of Brain (STAB2); Human Tumor Atlas Network (HTAN); Spatial Omics Resource of Cancer (SORC) Database; Comprehensive Repository of Spatial Transcriptomics (CROST); Spatial Transcript Omics DataBase (STOmics DB); Human Brain Transcriptome (HBT); National Institutes of Health (NIH) Blueprint Non-Human Primate (NHP) Atlas; Mouse Genome Informatics Gene Expression Database (MGI GXD); Adult Genotype–Tissue Expression (GTEx) Project; Brain Transcriptome (BrainTx) Database; Brain Initiative Cell Census Network (BICCN); Integrative Library of Integrated Network-Based Cellular Signatures (iLINCS); Database of Genotypes and Phenotypes (dbGaP); Alzheimer’s Disease (AD) Knowledge Portal; Aging, Dementia and Traumatic Brain Injury (TBI) Study; Common Metabolic Diseases Genome Atlas (CMDGA); Therapeutically Applicable Research to Generate Effective Treatments (TARGET); Single-Cell and Spatial RNA-Seq Database for Alzheimer’s Disease (ssREAD).

    Article Title: RegFormer: a single-cell foundation model powered by gene regulatory hierarchies.
    Article Snippet: We acknowledge the Stomics Cloud platform (https://cloud.stomics.tech/) for providing GPU computational resources.

    Sequencing:

    Article Title: Adult regenerative defects arise from discordant scaling of signal dependent growth and patterning
    Article Snippet: .. All subsequent steps, including cryosectioning, Stereo-seq library preparation, sequencing, and raw data processing, were performed at the BGI facility (Riga, Latvia) in collaboration with BGI, supported by a STOmics Grant awarded to E. Tanaka. .. All subsequent steps, including cryosectioning, Stereo-seq library preparation, sequencing, and raw data processing, were performed at the BGI facility (Riga, Latvia) in collaboration with BGI, supported by a STOmics Grant awarded to E. Tanaka.



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    (A) Schematic diagram illustrating the sub-anatomical compartments within the embryonic telencephalon, including the ventricular zone (VZ), sub-ventricular zone (SVZ), and mantle zone (MZ). (B) Expression of sub-anatomical markers across sections from E12.5 (left), E13.5 2x coronal, 1x sagittal (middle), E14.5 (right). From left to right column: VZ markers, SVZ markers, and MZ markers. From top to bottom row: telencephalon markers (VZ: Fabp7 , SVZ: St18 , MZ: Dcx ); dorsal telencephalon markers (VZ: Pax6 , SVZ: Eomes , MZ: Tbr1 ), and ventral telencephalon markers (VZ/SVZ: Ascl1, Olig2 , MZ: Nkx2-1 ). (C) Cell type classification following unsupervised clustering and manual annotation. WT sections (top row) and Dlx1/Dlx2 -/- sections (bottom row) for E12.5 (left), E13.5 (2x coronal, 1x sagittal) (middle) and E14.5 (right). v/dNP: ventral/dorsal neural progenitors, v/dIP: ventral/dorsal intermediate progenitors, ThalNeur: thalamic neuron, HypothalNeur: hypothalamic neuron. (D) UMAP plots showing clustering and cell type classification for WT and Dlx1/Dlx2 -/- sections. Legend as shown in (C). (E) Dot plot showing the mean expression of cluster markers in cells in each cluster from (C). Dot sizes denote the fraction of cells expressing the corresponding markers. (F) Bar plot showing the percentage of each cell type in WT and Dlx1/Dlx2 -/- E12.5-E14.5 spatial <t>transcriptomics</t> dataset, summarised based on age and genotype. Legend in (C). (G) Volcano plot showing the differential expression analyses comparing VZ and SVZ of WT vs Dlx1/Dlx2 -/- GE. Thresholds for differentially expressed genes were set at FDR<0.05 and fold change > 1 or < -1. (H) Gene ontology analysis results of all differentially expressed genes in VZ and SVZ of Dlx1/Dlx2 -/- GE.
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    bgi stomics analysis workflow  (Complete Genomics Inc)
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    (A) Schematic diagram illustrating the sub-anatomical compartments within the embryonic telencephalon, including the ventricular zone (VZ), sub-ventricular zone (SVZ), and mantle zone (MZ). (B) Expression of sub-anatomical markers across sections from E12.5 (left), E13.5 2x coronal, 1x sagittal (middle), E14.5 (right). From left to right column: VZ markers, SVZ markers, and MZ markers. From top to bottom row: telencephalon markers (VZ: Fabp7 , SVZ: St18 , MZ: Dcx ); dorsal telencephalon markers (VZ: Pax6 , SVZ: Eomes , MZ: Tbr1 ), and ventral telencephalon markers (VZ/SVZ: Ascl1, Olig2 , MZ: Nkx2-1 ). (C) Cell type classification following unsupervised clustering and manual annotation. WT sections (top row) and Dlx1/Dlx2 -/- sections (bottom row) for E12.5 (left), E13.5 (2x coronal, 1x sagittal) (middle) and E14.5 (right). v/dNP: ventral/dorsal neural progenitors, v/dIP: ventral/dorsal intermediate progenitors, ThalNeur: thalamic neuron, HypothalNeur: hypothalamic neuron. (D) UMAP plots showing clustering and cell type classification for WT and Dlx1/Dlx2 -/- sections. Legend as shown in (C). (E) Dot plot showing the mean expression of cluster markers in cells in each cluster from (C). Dot sizes denote the fraction of cells expressing the corresponding markers. (F) Bar plot showing the percentage of each cell type in WT and Dlx1/Dlx2 -/- E12.5-E14.5 spatial <t>transcriptomics</t> dataset, summarised based on age and genotype. Legend in (C). (G) Volcano plot showing the differential expression analyses comparing VZ and SVZ of WT vs Dlx1/Dlx2 -/- GE. Thresholds for differentially expressed genes were set at FDR<0.05 and fold change > 1 or < -1. (H) Gene ontology analysis results of all differentially expressed genes in VZ and SVZ of Dlx1/Dlx2 -/- GE.
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    Image Search Results


    (A) Schematic diagram illustrating the sub-anatomical compartments within the embryonic telencephalon, including the ventricular zone (VZ), sub-ventricular zone (SVZ), and mantle zone (MZ). (B) Expression of sub-anatomical markers across sections from E12.5 (left), E13.5 2x coronal, 1x sagittal (middle), E14.5 (right). From left to right column: VZ markers, SVZ markers, and MZ markers. From top to bottom row: telencephalon markers (VZ: Fabp7 , SVZ: St18 , MZ: Dcx ); dorsal telencephalon markers (VZ: Pax6 , SVZ: Eomes , MZ: Tbr1 ), and ventral telencephalon markers (VZ/SVZ: Ascl1, Olig2 , MZ: Nkx2-1 ). (C) Cell type classification following unsupervised clustering and manual annotation. WT sections (top row) and Dlx1/Dlx2 -/- sections (bottom row) for E12.5 (left), E13.5 (2x coronal, 1x sagittal) (middle) and E14.5 (right). v/dNP: ventral/dorsal neural progenitors, v/dIP: ventral/dorsal intermediate progenitors, ThalNeur: thalamic neuron, HypothalNeur: hypothalamic neuron. (D) UMAP plots showing clustering and cell type classification for WT and Dlx1/Dlx2 -/- sections. Legend as shown in (C). (E) Dot plot showing the mean expression of cluster markers in cells in each cluster from (C). Dot sizes denote the fraction of cells expressing the corresponding markers. (F) Bar plot showing the percentage of each cell type in WT and Dlx1/Dlx2 -/- E12.5-E14.5 spatial transcriptomics dataset, summarised based on age and genotype. Legend in (C). (G) Volcano plot showing the differential expression analyses comparing VZ and SVZ of WT vs Dlx1/Dlx2 -/- GE. Thresholds for differentially expressed genes were set at FDR<0.05 and fold change > 1 or < -1. (H) Gene ontology analysis results of all differentially expressed genes in VZ and SVZ of Dlx1/Dlx2 -/- GE.

    Journal: bioRxiv

    Article Title: The DLX/Notch axis is necessary for spatiotemporal regulation of neural cell fate

    doi: 10.1101/2025.09.28.679022

    Figure Lengend Snippet: (A) Schematic diagram illustrating the sub-anatomical compartments within the embryonic telencephalon, including the ventricular zone (VZ), sub-ventricular zone (SVZ), and mantle zone (MZ). (B) Expression of sub-anatomical markers across sections from E12.5 (left), E13.5 2x coronal, 1x sagittal (middle), E14.5 (right). From left to right column: VZ markers, SVZ markers, and MZ markers. From top to bottom row: telencephalon markers (VZ: Fabp7 , SVZ: St18 , MZ: Dcx ); dorsal telencephalon markers (VZ: Pax6 , SVZ: Eomes , MZ: Tbr1 ), and ventral telencephalon markers (VZ/SVZ: Ascl1, Olig2 , MZ: Nkx2-1 ). (C) Cell type classification following unsupervised clustering and manual annotation. WT sections (top row) and Dlx1/Dlx2 -/- sections (bottom row) for E12.5 (left), E13.5 (2x coronal, 1x sagittal) (middle) and E14.5 (right). v/dNP: ventral/dorsal neural progenitors, v/dIP: ventral/dorsal intermediate progenitors, ThalNeur: thalamic neuron, HypothalNeur: hypothalamic neuron. (D) UMAP plots showing clustering and cell type classification for WT and Dlx1/Dlx2 -/- sections. Legend as shown in (C). (E) Dot plot showing the mean expression of cluster markers in cells in each cluster from (C). Dot sizes denote the fraction of cells expressing the corresponding markers. (F) Bar plot showing the percentage of each cell type in WT and Dlx1/Dlx2 -/- E12.5-E14.5 spatial transcriptomics dataset, summarised based on age and genotype. Legend in (C). (G) Volcano plot showing the differential expression analyses comparing VZ and SVZ of WT vs Dlx1/Dlx2 -/- GE. Thresholds for differentially expressed genes were set at FDR<0.05 and fold change > 1 or < -1. (H) Gene ontology analysis results of all differentially expressed genes in VZ and SVZ of Dlx1/Dlx2 -/- GE.

    Article Snippet: Samples were prepared and processed in accordance with manufacturer’s instructions (BGI STOmics Stereo-seq Transcriptomics set for Chip-on-a-slide user manual version B) using the STOmics Transcriptomics kit (STOmics Cat# 111KT114).

    Techniques: Expressing, Quantitative Proteomics