bedtools software (SourceForge net)
90
Structured Review
SourceForge net
bedtools software
Bedtools Software, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bedtools+software/bedtools/pm26167905-451-13-15
Average 90 stars, based on 1 article reviews
Bedtools Software, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bedtools+software/bedtools/pm26167905-451-13-15
Average 90 stars, based on 1 article reviews
bedtools software - by Bioz Stars,
2026-11
90/100 stars
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other:Article Title: Insights into the epigenomic landscape of the human malaria vector Anopheles gambiae Article Snippet: We used BedTools v2.19.0 and Article Title: Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes Article Snippet: Article Title: Evolutionary conservation of MLO gene promoter signatures Article Snippet: Putative promoter regions (PPRs) (2 Kbp upstream the predicted TSS reported in gene annotations) were extracted using Article Title: Activation of HIV-1 proviruses increases downstream chromatin accessibility Article Snippet: Article Title: A Wide Spectrum of EGFR Mutations in Glioblastoma is Detected by a Single Clinical Oncology Targeted Next-Generation Sequencing Panel Article Snippet: Quality metrics were calculated using the BEDTools and Software:Article Title: The SESAME complex regulates cell senescence through the generation of acetyl-CoA. Article Snippet: 1State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China.. 2Human Aging Research Institute (HARI), School of Life Science, Nanchang University, Nanchang, China.. 3The Central Laboratory, Wuhan No.1 Hospital, Wuhan, China. Article Title: Coexpression networks identify brain region-specific enhancer RNAs in the human brain. Article Snippet: A large body of functional genomic data has accumulated over the past few years, characterizing chromatin modifications, long-range chromatin interactions and the transcriptional output of noncoding genomic regions1–5.. These studies have demonstrated a previously unrecognized complexity of the human transcriptome1,5, experimentally characterized promoter regions5 and begun to uncover the properties of chromatin modifications at cis-regulatory regions2–4.. At the same time, large-scale genome-wide association studies (GWAS) have brought substantial evidence that noncoding sequence variants are an important component of the genetic risk for human disorders6,7. Modification:Article Title: Coexpression networks identify brain region-specific enhancer RNAs in the human brain. Article Snippet: A large body of functional genomic data has accumulated over the past few years, characterizing chromatin modifications, long-range chromatin interactions and the transcriptional output of noncoding genomic regions1–5.. These studies have demonstrated a previously unrecognized complexity of the human transcriptome1,5, experimentally characterized promoter regions5 and begun to uncover the properties of chromatin modifications at cis-regulatory regions2–4.. At the same time, large-scale genome-wide association studies (GWAS) have brought substantial evidence that noncoding sequence variants are an important component of the genetic risk for human disorders6,7. Cross-linking Immunoprecipitation:Article Title: Widespread 8-oxoguanine modifications of miRNA seeds differentially regulate redox-dependent cancer development. Article Snippet: Oxidative stress contributes to tumourigenesis by altering gene expression.. One accompanying modification, 8-oxoguanine (oG) can change RNA–RNA interactions via oG•A base pairing, but its regulatory roles remain elusive.. Here, on the basis of oG-induced guanine-to-thymine (oG > T) variations featured in sequencing, we discovered widespread position-specific oGs in tumour microRNAs, preferentially oxidized towards 5′ end seed regions (positions 2–8) with clustered sequence patterns and clinically associated with patients in lower-grade gliomas and liver hepatocellular carcinoma. Generated:Article Title: Widespread 8-oxoguanine modifications of miRNA seeds differentially regulate redox-dependent cancer development. Article Snippet: Oxidative stress contributes to tumourigenesis by altering gene expression.. One accompanying modification, 8-oxoguanine (oG) can change RNA–RNA interactions via oG•A base pairing, but its regulatory roles remain elusive.. Here, on the basis of oG-induced guanine-to-thymine (oG > T) variations featured in sequencing, we discovered widespread position-specific oGs in tumour microRNAs, preferentially oxidized towards 5′ end seed regions (positions 2–8) with clustered sequence patterns and clinically associated with patients in lower-grade gliomas and liver hepatocellular carcinoma. |