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bbduk from bbmap v38.68 (Illumina Inc)

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Illumina Inc bbduk from bbmap v38.68
Bbduk From Bbmap V38.68, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bbmap+bbduk/bbduk+from+bbmap+v38+68/pm37592350-35-25-0
Average 90 stars, based on 1 article reviews

bbduk from bbmap v38.68 - by Bioz Stars, 2026-10

90/100 stars

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Article Title: Draft genome sequence of two "Candidatus Intestinicoccus colisanans" strains isolated from faeces of healthy humans.
Article Snippet: Illumina reads were trimmed and quality controlled using Trimmomatic v0.36 (ILLUMINACLIP:adapters_ NexteraPE-PE_TruSeq3-PE.fa:2:30:10, LEADING:3, TRAILING:3, SLIDINGWINDOW:4:15, CROP:150 HEADCROP:0, MINLEN:100) [4], and PhiX reads were removed using bbduk from bbmap v38.68 [5].

Article Title: Reduced representation sequencing accurately quantifies relative abundance and reveals population-level variation in Pseudo-nitzschia spp.
Article Snippet: The bbduk command of the BBMap package (Bushnell, 2014) was then used to filter reads matching to Illumina sequencing adapters.

Article Title: Decoding myofibroblast origins in human kidney fibrosis
Article Snippet: Illumina Tn5 adapter sequences were trimmed from ATAC-Seq reads using bbduk command from BBmap suite (version 38.32, settings: trimq=18, k=20, mink=5, hdist=2, hdist2=0) .

Article Title: Draft genome sequence of two “ Candidatus Intestinicoccus colisanans” strains isolated from faeces of healthy humans
Article Snippet: Illumina reads were trimmed and quality controlled using Trimmomatic v0.36 (ILLUMINACLIP:adapters_NexteraPE-PE_TruSeq3-PE.fa:2:30:10, LEADING:3, TRAILING:3, SLIDINGWINDOW:4:15, CROP:150 HEADCROP:0, MINLEN:100) [ ], and PhiX reads were removed using bbduk from bbmap v38.68 [ ].

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Article Title: Genomic characterization and radiation tolerance of Naganishia kalamii sp. nov. and Cystobasidium onofrii sp. nov. from Mars 2020 mission assembly facilities
Article Snippet: .. The genomes for the two novel yeast species were reassembled using the Automatic Assembly For The Fungi (AAFTF v 0.3.3) pipeline (Stajich and Palmer ), as follows: (i)The Illumina sequencing reads underwent trimming via the BBDuk module within the BBMap software suite (v 38.95 ) (BBMap: A Fast, Accurate, Splice-Aware Aligner (Conference) OSTI.GOV); (ii) BBMap was employed to eliminate any contaminant reads, and (iii) the resulting high-quality reads were assembled using SPAdes v3.15.4 (Bankevich et al. ). (iv) Contaminant contigs were identified and removed, using nucleotide Basic Local Alignment Search Tool (BLASTn) (Johnson et al. ); (v) We purged duplicated contigs using minimap2 (Li ). ..

Article Title: Long-Distance Transportation Causes Temperature Stress in the Honey Bee, Apis mellifera (Hymenoptera: Apidae)
Article Snippet: .. Overrepresented sequences and Illumina sequencing artifacts and remaining adaptor sequences were removed using the BBDuk functions of the BBMap software package (v38.18) ( ). .. Illumina data is archived at the NCBI Sequence Read Archive indexed under BioProject PRJNA495845.

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