aspergillus comparative database (Broad Institute Inc)
90
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Broad Institute Inc
aspergillus comparative database
Aspergillus Comparative Database, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/basic+local+alignment+sequence+tool+(tblastn)/aspergillus+comparative+database/pmc03202775-87-1-5
Average 90 stars, based on 1 article reviews
Aspergillus Comparative Database, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/basic+local+alignment+sequence+tool+(tblastn)/aspergillus+comparative+database/pmc03202775-87-1-5
Average 90 stars, based on 1 article reviews
aspergillus comparative database - by Bioz Stars,
2026-10
90/100 stars
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other:Article Title: Modelling and mutational analysis of Aspergillus nidulans UreA, a member of the subfamily of urea/H + transporters in fungi and plants Article Snippet: Sequences were obtained from the Aspergillus Comparative Database, Broad Institute ( http://www.broad.mit.edu/annotation/fungi/aspergillus ), the Saccharomyces genome database ( http://www.yeastgenome.org ), the Candida Genome Database ( http://www.candidagenome.org ), The Arabidopsis Information Resource ( http://www.arabidopsis.org ), the Oryza sativa genome database ( http://www.plantgdb.org/OsGDB ) and from the National Center for Biotechnology Information ( http://www.ncbi.nlm.nih.gov ). Article Title: A-xylosidase enhanced conversion of plant biomass into fermentable sugars Article Snippet: Proteins with strong identity to Ax1A were not observed in A. fumigatus, A. clavatus, or Article Title: Characterization of the aodA , dnmA, mnSOD and pimA genes in Aspergillus nidulans Article Snippet: Target genes in the A. nidulans genome were identified and confirmed by based on annotation data in the Broad Institute Aspergillus Comparative Database as well as by using S. cerevisiae and P. anserina homologues in protein vs. protein queries in NCBI BLAST (blastp; http://blast.ncbi.nlm.nih.gov/Blast.cgi? Article Title: A-xylosidase enhanced conversion of plant biomass into fermentable sugars Article Snippet: XP_001217011.1 Aspergillus terreus 1259 0.0 81 yes XP_001265600.1 Neosartorya fischeri 1234 0.0 79 yes XP_002378848.1 Aspergillus flavus 1232 0.0 79 yes* XP_001823456.1 Aspergillus oryzae 1230 0.0 78 yes gb|EGO01163.1 Serpula lacrymans 751 0.0 52 no XP_003031084.1 Schizophyllum 708 0.0 51 yes commune ZP_07294496.1 Streptomyces 376 8e-118 35 no hygroscopicus gb|EGP91994.1 Mycosphaerella 374 3e-117 33 no graminicola ZP_08605161.1 Lachnospiraceae 369 3e-115 34 no bacterium YP_003842451.1 Clostridium 369 5e-115 32 no cellulovorans gb|ADI06537.1 Streptomyces 368 le-114 34 no bingchenggensis ZP_06576342.1 Streptomyces 366 2e-114 33 no ghanaensis Against fungi only: XP_001217011.1 Aspergillus terreus 1259 0.0 81 yes XP_001265600.1 Neosartorya fischeri 1234 0.0 79 yes XP_002378848.1 Aspergillus flavus 1232 0.0 79 yes* XP_001823456.1 Aspergillus oryzae 1230 0.0 78 yes gb|EGO01163.1 Serpula lacrymans 751 0.0 52 Yes* XP_003031084.1 Schizophyllum 708 0.0 51 yes commune gb|EGP91994.1 Mycosphaerella 374 3e-121 33 no graminicola XP_003048593.1 Nectria 359 1e-115 33 no haematococca XP_388973.1 Gibberella zeae 358 4e-115 32 no XP_003047209.1 Nectria 355 5e-114 33 no haematococca gb|AEO58673.1 Myceliophthora 354 1e-113 33 No thermophila XP_364756.1 Magnaporthe grisea 352 1e-112 32 no *reannotation to use a different ATG translational start site reveals a signal peptide Among species of Aspergillus, orthologs with strong E-values and percent amino acid identity to Ax1A are present in A. flavus, Aspergillus oryzae, Aspergillus terreus, Aspergillus aculeatus, and Aspergillus carbonarius, but not A. fumigatus, A. clavatus, or Article Title: Motif-Independent Prediction of a Secondary Metabolism Gene Cluster Using Comparative Genomics: Application to Sequenced Genomes of Aspergillus and Ten Other Filamentous Fungal Species Article Snippet: The nucleotide and amino acid sequences of the genomes and deduced coding sequences, respectively, were retrieved from the following databases: Aspergillus flavus (accession no. EQ963472∼EQ963493) and A. oryzae (accession no. AP007150∼AP007177) from DDBJ/EMBL/GenBank DNA database; A. fumigatus , A. nidulans and A. terreus from the Aspergillus comparative database ( http://www.broadinstitute.org/annotation/genome/aspergillus_group/MultiHome.html ); Magnaporthe grisea from the Magnaporthe comparative database ( http://www.broadinstitute.org/annotation/genome/magnaporthe_comparative/MultiHome.html) ; Chaetomium globosum from the Chaetomium globosum database ( http://www.broadinstitute.org/annotation/genome/chaetomium_globosum ); and Fusarium graminearum , F. oxysporum and F. verticillioides from the Fusarium comparative database ( http://www.broadinstitute.org/annotation/genome/fusarium_group/MultiHome.html ) at The Broad Institute . Article Title: RmtA, a Putative Arginine Methyltransferase, Regulates Secondary Metabolism and Development in Aspergillus flavus Article Snippet: The deduced amino acid sequence encoded by A . flavus rmtA (AFL2G_09078) was obtained from the Broad Institute Aspergillus Comparative Database. Sequencing:Article Title: The Aspergillus flavus fluP-associated metabolite promotes sclerotial production. Article Snippet: The Aspergillus flavus fluP-associated metabolite promotes sclerotial production Chang Perng-Kuang, Leslie L. Scharfenstein, Kenneth C. Ehrlich, José Diana Di Mavungu PII: S1878-6146(16)30095-2 DOI: 10.1016/j.funbio.2016.07.010 Reference: FUNBIO 749 To appear in: Fungal Biology Construct:Article Title: Comparison of Healthy and Dandruff Scalp Microbiome Reveals the Role of Commensals in Scalp Health. Article Snippet: .. These fungal genes and genomes were downloaded from |