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p7 barcoded sequencing primer nebnext multiplex oligos for illumina  (New England Biolabs)


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    New England Biolabs p7 barcoded sequencing primer nebnext multiplex oligos for illumina
    P7 Barcoded Sequencing Primer Nebnext Multiplex Oligos For Illumina, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 96/100, based on 1784 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/barcoding+primers/NEBNext+Multiplex+Oligos+for+Illumina/pmc12915293-242-46-50
    Average 96 stars, based on 1784 article reviews
    p7 barcoded sequencing primer nebnext multiplex oligos for illumina - by Bioz Stars, 2026-11
    96/100 stars

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    Related Articles

    Polymerase Chain Reaction:

    Article Title: Transposon sequencing reveals Burkholderia gene fitness in a spaceflight-relevant plant-pathogen interaction
    Article Snippet: .. The size-selected fragments concentrated into 7.5 μL were PCR amplified using 2.5 μL of a forward primer specific for the transposon that also harbored a 5′ biotin label, 2.5 μL of a P7 barcoded sequencing primer NEBNext Multiplex Oligos for Illumina (Index Primers Set 1 and 2), and 12.5 μL of NEBNext Ultra II Q5 Master Mix. ..

    Article Title: DMN-seq enriches DNA hypomethylated regions for biomarker discovery using 5-methylcytosine glycosylase.
    Article Snippet: The mixture was then supplemented with 1 μl of 100 U/μl CircLigase II ssDNA ligase (Biosearch Technologies) and sequentially incubated at 37 °C for 30 min, 65 °C for 1 h and 95 °C for 5 min. After purification with 1.2x Ampure Beads, DME-treated triplicates were amplified via customized DME P5 primer (IDT, Additional file 1: Table S1) and P7 primers from NEBNext Multiplex Oligos for Illumina (NEB) in NEBNext Ultra II Q5 Master Mix (NEB). .. The NEBNext Universal PCR Primer for Illumina and P7 primers NEBNext Multiplex Oligos for Illumina (NEB) were used to amplify the untreated input sample in NEBNext Ultra II Q5 Master Mix (NEB), and the UBS-seq sample was amplified in KAPA HiFi Uracil+ DNA polymerase (Roche). .. Finally, all the libraries were cleaned with 2 rounds of 0.9X AMPure XP beads, and their quality was examined via a high-sensitivity fragment analyzer at the University of Chicago Genomics Core Facility. λ-DNA libraries were sequenced at PE150 on the Illumina NextSeq 1000/2000 platform at the University of Chicago SingleCell Immunophenotyping Core, and mESC gDNA libraries were sequenced with the Illumina NovaSeqX platform.

    Article Title: ACSS2 mediates prenatal alcohol exposure-related morphological and behavioral phenotypes.
    Article Snippet: Total RNA was extracted using TRIzol-chloroform and the RNeasy Mini Kit (Qiagen, 74104) with RNase-free DNase (Qiagen, 79254) treatment according to manufacturer protocols. .. Total RNA quality was assessed on an Agilent 4200 TapeStation using the High Sensitivity RNA ScreenTape Assay (Agilent, 5067–5579 and 5067–5580). mRNA was isolated from 10 ng total RNA using the NEBNext Poly(A) mRNA Magnetic Isolation Module (New England Biolabs, E7490), and libraries were prepared using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (New England Biolabs, E7760) in coordination with NEBNext Multiplex Oligos for Illumina (New England Biolabs, E6440) and HighPrep PCR Beads (MagBio, AC-60050). .. Library quality was assessed using the D1000 ScreenTape Assay (Agilent, 5067–5582).

    Article Title: Transposon sequencing reveals Burkholderia gene fitness in a spaceflight-relevant plant-pathogen interaction
    Article Snippet: .. A second PCR was carried out using the hybridized biotinylated transposon-streptavidin beads in 7.5 μL of 0.1× TE, 2.5 μL of a forward primer that included the P5 adapter sequence, followed by a random hexamer sequence and the transposon-specific primer sequence, 2.5 μL of the corresponding P7 barcoded sequencing primer NEBNext Multiplex Oligos for Illumina (Index Primers Set 1 and 2) used in the first PCR reaction for the respective sample, and 12.5 μL of NEBNext Ultra II Q5 Master Mix. .. Each library was quantified using the Qubit DNA High Sensitivity (HS) kit and the Agilent Bioanalyzer DNA HS kit.

    Amplification:

    Article Title: Transposon sequencing reveals Burkholderia gene fitness in a spaceflight-relevant plant-pathogen interaction
    Article Snippet: .. The size-selected fragments concentrated into 7.5 μL were PCR amplified using 2.5 μL of a forward primer specific for the transposon that also harbored a 5′ biotin label, 2.5 μL of a P7 barcoded sequencing primer NEBNext Multiplex Oligos for Illumina (Index Primers Set 1 and 2), and 12.5 μL of NEBNext Ultra II Q5 Master Mix. ..

    Article Title: DMN-seq enriches DNA hypomethylated regions for biomarker discovery using 5-methylcytosine glycosylase.
    Article Snippet: The mixture was then supplemented with 1 μl of 100 U/μl CircLigase II ssDNA ligase (Biosearch Technologies) and sequentially incubated at 37 °C for 30 min, 65 °C for 1 h and 95 °C for 5 min. After purification with 1.2x Ampure Beads, DME-treated triplicates were amplified via customized DME P5 primer (IDT, Additional file 1: Table S1) and P7 primers from NEBNext Multiplex Oligos for Illumina (NEB) in NEBNext Ultra II Q5 Master Mix (NEB). .. The NEBNext Universal PCR Primer for Illumina and P7 primers NEBNext Multiplex Oligos for Illumina (NEB) were used to amplify the untreated input sample in NEBNext Ultra II Q5 Master Mix (NEB), and the UBS-seq sample was amplified in KAPA HiFi Uracil+ DNA polymerase (Roche). .. Finally, all the libraries were cleaned with 2 rounds of 0.9X AMPure XP beads, and their quality was examined via a high-sensitivity fragment analyzer at the University of Chicago Genomics Core Facility. λ-DNA libraries were sequenced at PE150 on the Illumina NextSeq 1000/2000 platform at the University of Chicago SingleCell Immunophenotyping Core, and mESC gDNA libraries were sequenced with the Illumina NovaSeqX platform.

    Sequencing:

    Article Title: Transposon sequencing reveals Burkholderia gene fitness in a spaceflight-relevant plant-pathogen interaction
    Article Snippet: .. The size-selected fragments concentrated into 7.5 μL were PCR amplified using 2.5 μL of a forward primer specific for the transposon that also harbored a 5′ biotin label, 2.5 μL of a P7 barcoded sequencing primer NEBNext Multiplex Oligos for Illumina (Index Primers Set 1 and 2), and 12.5 μL of NEBNext Ultra II Q5 Master Mix. ..

    Article Title: Transposon sequencing reveals Burkholderia gene fitness in a spaceflight-relevant plant-pathogen interaction
    Article Snippet: .. A second PCR was carried out using the hybridized biotinylated transposon-streptavidin beads in 7.5 μL of 0.1× TE, 2.5 μL of a forward primer that included the P5 adapter sequence, followed by a random hexamer sequence and the transposon-specific primer sequence, 2.5 μL of the corresponding P7 barcoded sequencing primer NEBNext Multiplex Oligos for Illumina (Index Primers Set 1 and 2) used in the first PCR reaction for the respective sample, and 12.5 μL of NEBNext Ultra II Q5 Master Mix. .. Each library was quantified using the Qubit DNA High Sensitivity (HS) kit and the Agilent Bioanalyzer DNA HS kit.

    Article Title: Tissue and maturation specific DNA methylation dynamics of gonadotropin genes in chub mackerel (Scomber japonicus) using cost-effective targeted bisulfite sequencing.
    Article Snippet: .. It is particularly suitable for handling large sample volumes that exceed the capacity of standard sequencing index kits (e.g., NEBNext® Multiplex Oligos for Illumina) or, as mentioned, it can serve as an affordable alternative in laboratories where NGS library preparation is an infrequent practice, reducing costs by eliminating the need to purchase Illumina indexes. ..

    Multiplex Assay:

    Article Title: Transposon sequencing reveals Burkholderia gene fitness in a spaceflight-relevant plant-pathogen interaction
    Article Snippet: .. The size-selected fragments concentrated into 7.5 μL were PCR amplified using 2.5 μL of a forward primer specific for the transposon that also harbored a 5′ biotin label, 2.5 μL of a P7 barcoded sequencing primer NEBNext Multiplex Oligos for Illumina (Index Primers Set 1 and 2), and 12.5 μL of NEBNext Ultra II Q5 Master Mix. ..

    Article Title: Acetate enhances long-term memory in female mice by sex-, context-, and brain region-specific epigenetic and transcriptional remodeling.
    Article Snippet: Metabolic control of chromatin and gene expression is emerging as a key mechanism influencing critical neuronal functions.. Here, we found that the intermediary metabolite acetate enhanced longterm memory in female mice, which was associated with epigenetic and transcriptional remodeling in the dorsal hippocampus.. Acetateenhanced memory was driven by increased acetylation of the histone variant H2A.Z and increased expression of genes implicated in learning in the female dorsal hippocampus.

    Article Title: DMN-seq enriches DNA hypomethylated regions for biomarker discovery using 5-methylcytosine glycosylase.
    Article Snippet: The mixture was then supplemented with 1 μl of 100 U/μl CircLigase II ssDNA ligase (Biosearch Technologies) and sequentially incubated at 37 °C for 30 min, 65 °C for 1 h and 95 °C for 5 min. After purification with 1.2x Ampure Beads, DME-treated triplicates were amplified via customized DME P5 primer (IDT, Additional file 1: Table S1) and P7 primers from NEBNext Multiplex Oligos for Illumina (NEB) in NEBNext Ultra II Q5 Master Mix (NEB). .. The NEBNext Universal PCR Primer for Illumina and P7 primers NEBNext Multiplex Oligos for Illumina (NEB) were used to amplify the untreated input sample in NEBNext Ultra II Q5 Master Mix (NEB), and the UBS-seq sample was amplified in KAPA HiFi Uracil+ DNA polymerase (Roche). .. Finally, all the libraries were cleaned with 2 rounds of 0.9X AMPure XP beads, and their quality was examined via a high-sensitivity fragment analyzer at the University of Chicago Genomics Core Facility. λ-DNA libraries were sequenced at PE150 on the Illumina NextSeq 1000/2000 platform at the University of Chicago SingleCell Immunophenotyping Core, and mESC gDNA libraries were sequenced with the Illumina NovaSeqX platform.

    Article Title: ACSS2 mediates prenatal alcohol exposure-related morphological and behavioral phenotypes.
    Article Snippet: Total RNA was extracted using TRIzol-chloroform and the RNeasy Mini Kit (Qiagen, 74104) with RNase-free DNase (Qiagen, 79254) treatment according to manufacturer protocols. .. Total RNA quality was assessed on an Agilent 4200 TapeStation using the High Sensitivity RNA ScreenTape Assay (Agilent, 5067–5579 and 5067–5580). mRNA was isolated from 10 ng total RNA using the NEBNext Poly(A) mRNA Magnetic Isolation Module (New England Biolabs, E7490), and libraries were prepared using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (New England Biolabs, E7760) in coordination with NEBNext Multiplex Oligos for Illumina (New England Biolabs, E6440) and HighPrep PCR Beads (MagBio, AC-60050). .. Library quality was assessed using the D1000 ScreenTape Assay (Agilent, 5067–5582).

    Article Title: Direct interaction of ribosomes with postsynaptic proteins gives rise to a privileged local synaptic translatome
    Article Snippet: Pellets were washed with ice-cold 75% ethanol, air-dried for 10 min at RT, and resuspended in 10 μL RNase-free water (Invitrogen, #AM9937). .. RNA yield was quantified using the Qubit RNA HS assay (Invitrogen, #Q32855) and integrity was assessed using the Agilent RNA 6000 Pico kit. mRNA-seq libraries were generated from 200-300 ng of total RNA using the NEBNext Poly(A) mRNA Magnetic Isolation Module (New England Biolabs, #E7490) together with the Ultra II Directional RNA Library Prep kit for Illumina (New England Biolabs, #E7760) and NEBNext Multiplex Oligos for Illumina (New England Biolabs, #E6440). .. Libraries were sequenced on an Illumina NextSeq2000 using paired-end 61 bp reads.

    Article Title: Transposon sequencing reveals Burkholderia gene fitness in a spaceflight-relevant plant-pathogen interaction
    Article Snippet: .. A second PCR was carried out using the hybridized biotinylated transposon-streptavidin beads in 7.5 μL of 0.1× TE, 2.5 μL of a forward primer that included the P5 adapter sequence, followed by a random hexamer sequence and the transposon-specific primer sequence, 2.5 μL of the corresponding P7 barcoded sequencing primer NEBNext Multiplex Oligos for Illumina (Index Primers Set 1 and 2) used in the first PCR reaction for the respective sample, and 12.5 μL of NEBNext Ultra II Q5 Master Mix. .. Each library was quantified using the Qubit DNA High Sensitivity (HS) kit and the Agilent Bioanalyzer DNA HS kit.

    Article Title: Tissue and maturation specific DNA methylation dynamics of gonadotropin genes in chub mackerel (Scomber japonicus) using cost-effective targeted bisulfite sequencing.
    Article Snippet: .. It is particularly suitable for handling large sample volumes that exceed the capacity of standard sequencing index kits (e.g., NEBNext® Multiplex Oligos for Illumina) or, as mentioned, it can serve as an affordable alternative in laboratories where NGS library preparation is an infrequent practice, reducing costs by eliminating the need to purchase Illumina indexes. ..

    Ligation:

    Article Title: Acetyl-CoA Synthetase 1 regulates global histone propionylation and metabolic stress responses
    Article Snippet: .. NEBNext Unique Molecular Identifier (UMI) adapters (E7878S) were diluted 1:50 for adaptor ligation reactions, followed by clean-up of adaptor-ligated DNA without size selection. ..

    Size Selection:

    Article Title: Acetyl-CoA Synthetase 1 regulates global histone propionylation and metabolic stress responses
    Article Snippet: .. NEBNext Unique Molecular Identifier (UMI) adapters (E7878S) were diluted 1:50 for adaptor ligation reactions, followed by clean-up of adaptor-ligated DNA without size selection. ..

    Isolation:

    Article Title: ACSS2 mediates prenatal alcohol exposure-related morphological and behavioral phenotypes.
    Article Snippet: Total RNA was extracted using TRIzol-chloroform and the RNeasy Mini Kit (Qiagen, 74104) with RNase-free DNase (Qiagen, 79254) treatment according to manufacturer protocols. .. Total RNA quality was assessed on an Agilent 4200 TapeStation using the High Sensitivity RNA ScreenTape Assay (Agilent, 5067–5579 and 5067–5580). mRNA was isolated from 10 ng total RNA using the NEBNext Poly(A) mRNA Magnetic Isolation Module (New England Biolabs, E7490), and libraries were prepared using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (New England Biolabs, E7760) in coordination with NEBNext Multiplex Oligos for Illumina (New England Biolabs, E6440) and HighPrep PCR Beads (MagBio, AC-60050). .. Library quality was assessed using the D1000 ScreenTape Assay (Agilent, 5067–5582).

    Article Title: Direct interaction of ribosomes with postsynaptic proteins gives rise to a privileged local synaptic translatome
    Article Snippet: Pellets were washed with ice-cold 75% ethanol, air-dried for 10 min at RT, and resuspended in 10 μL RNase-free water (Invitrogen, #AM9937). .. RNA yield was quantified using the Qubit RNA HS assay (Invitrogen, #Q32855) and integrity was assessed using the Agilent RNA 6000 Pico kit. mRNA-seq libraries were generated from 200-300 ng of total RNA using the NEBNext Poly(A) mRNA Magnetic Isolation Module (New England Biolabs, #E7490) together with the Ultra II Directional RNA Library Prep kit for Illumina (New England Biolabs, #E7760) and NEBNext Multiplex Oligos for Illumina (New England Biolabs, #E6440). .. Libraries were sequenced on an Illumina NextSeq2000 using paired-end 61 bp reads.

    RNA HS Assay:

    Article Title: Direct interaction of ribosomes with postsynaptic proteins gives rise to a privileged local synaptic translatome
    Article Snippet: Pellets were washed with ice-cold 75% ethanol, air-dried for 10 min at RT, and resuspended in 10 μL RNase-free water (Invitrogen, #AM9937). .. RNA yield was quantified using the Qubit RNA HS assay (Invitrogen, #Q32855) and integrity was assessed using the Agilent RNA 6000 Pico kit. mRNA-seq libraries were generated from 200-300 ng of total RNA using the NEBNext Poly(A) mRNA Magnetic Isolation Module (New England Biolabs, #E7490) together with the Ultra II Directional RNA Library Prep kit for Illumina (New England Biolabs, #E7760) and NEBNext Multiplex Oligos for Illumina (New England Biolabs, #E6440). .. Libraries were sequenced on an Illumina NextSeq2000 using paired-end 61 bp reads.

    Generated:

    Article Title: Direct interaction of ribosomes with postsynaptic proteins gives rise to a privileged local synaptic translatome
    Article Snippet: Pellets were washed with ice-cold 75% ethanol, air-dried for 10 min at RT, and resuspended in 10 μL RNase-free water (Invitrogen, #AM9937). .. RNA yield was quantified using the Qubit RNA HS assay (Invitrogen, #Q32855) and integrity was assessed using the Agilent RNA 6000 Pico kit. mRNA-seq libraries were generated from 200-300 ng of total RNA using the NEBNext Poly(A) mRNA Magnetic Isolation Module (New England Biolabs, #E7490) together with the Ultra II Directional RNA Library Prep kit for Illumina (New England Biolabs, #E7760) and NEBNext Multiplex Oligos for Illumina (New England Biolabs, #E6440). .. Libraries were sequenced on an Illumina NextSeq2000 using paired-end 61 bp reads.

    Random Hexamer:

    Article Title: Transposon sequencing reveals Burkholderia gene fitness in a spaceflight-relevant plant-pathogen interaction
    Article Snippet: .. A second PCR was carried out using the hybridized biotinylated transposon-streptavidin beads in 7.5 μL of 0.1× TE, 2.5 μL of a forward primer that included the P5 adapter sequence, followed by a random hexamer sequence and the transposon-specific primer sequence, 2.5 μL of the corresponding P7 barcoded sequencing primer NEBNext Multiplex Oligos for Illumina (Index Primers Set 1 and 2) used in the first PCR reaction for the respective sample, and 12.5 μL of NEBNext Ultra II Q5 Master Mix. .. Each library was quantified using the Qubit DNA High Sensitivity (HS) kit and the Agilent Bioanalyzer DNA HS kit.

    Next-Generation Sequencing:

    Article Title: Tissue and maturation specific DNA methylation dynamics of gonadotropin genes in chub mackerel (Scomber japonicus) using cost-effective targeted bisulfite sequencing.
    Article Snippet: .. It is particularly suitable for handling large sample volumes that exceed the capacity of standard sequencing index kits (e.g., NEBNext® Multiplex Oligos for Illumina) or, as mentioned, it can serve as an affordable alternative in laboratories where NGS library preparation is an infrequent practice, reducing costs by eliminating the need to purchase Illumina indexes. ..



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