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cytonuclear v1 5 image analysis algorithm  (Indica Labs)

 
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    Indica Labs cytonuclear v1 5 image analysis algorithm
    Cytonuclear V1 5 Image Analysis Algorithm, supplied by Indica Labs, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/analysis+algorithms/algorithm+deconvolution+halo/pm41933194-250-13-11
    Average 86 stars, based on 1 article reviews
    cytonuclear v1 5 image analysis algorithm - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    Activation Assay:

    Article Title: Accelerated amyloid neurodegeneration in HIV-1-infected APP-KI Alzheimer’s disease mice
    Article Snippet: .. The Indica Labs-Microglial Activation FL v1.0.6 module was used to quantify activated microglia. ..

    Software:

    Article Title: Non-coding variants in intron 2 of HK1 associated with hyperinsulinism with variable clinical phenotype.
    Article Snippet: Slides were incubated with 21 AC CE PT ED M AN US CR IP T D ow nloaded from https://academ ic.oup.com /jcem /advance-article/doi/10.1210/clinem /dgag108/8513866 by SBD -FFLC H -U SP user on 15 M arch 2026 primary antibodies [rabbit anti-HK1 1:250 (RRID:AB_2117001), and goat anti-insulin 1:500 1 (RRID: AB_2296108), Santa Cruz Biotechnology, Dallas, Texas] overnight at 4 degrees Celsius 2 followed by incubation with the secondary antibodies [488 donkey anti-goat 1:500 3 (RRID:AB_2762833), Cy3 donkey anti-goat 1:500 (RRID:AB_2762840) and DAPI 1:1000] for 4 1 hour in a hydration chamber at room temperature. .. Slides were scanned into ImageScope 5 Software (Leica Biosystems, Deer Park, Illinois) and analyzed using the Indica Cyto-Nuclear FL 6 v1.3 algorithm (Indica Labs, Albuquerque, New Mexico). ..

    Article Title: Quemliclustat and chemotherapy with or without zimberelimab in metastatic pancreatic adenocarcinoma: a randomized phase 1 trial.
    Article Snippet: .. Chromogenic RNAscope images were deconvoluted and converted into pseudofluorescent images using the Deconvolution module (v.2.0.1) in HALO software (v.4.0, Indica Labs). ..

    other:

    Article Title: Human lung explants as a predictive platform for evaluating the on-target, off-tumor toxicity of T cell bispecifics
    Article Snippet: Within these areas, the area occupied by DAPI signal was calculated using a standard HALO Algorithm (Indica Labs - Area Quantification FL.v2.3.4), based on manually adjusted DAPI signal thresholds.

    RNAscope:

    Article Title: Quemliclustat and chemotherapy with or without zimberelimab in metastatic pancreatic adenocarcinoma: a randomized phase 1 trial.
    Article Snippet: .. Chromogenic RNAscope images were deconvoluted and converted into pseudofluorescent images using the Deconvolution module (v.2.0.1) in HALO software (v.4.0, Indica Labs). ..



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    Image Search Results


    Angiogenesis induced by VEGF secreted from VEGF-MSCs. Human umbilical vein endothelial cells labelled by CytoLight Green (GFP-HUVECs) were used for the development of angiogenic networks, and the length of networks was determined by the IncuCyte live-cell analysis system. ( A ) VEGF effectively induced the formation of vascular networks, which was able to be inhibited by suramin, a VEGF signaling inhibitor. Data shown as mean (SD) ( n = 6). ( B ) A concentration-dependent effect was shown in the angiogenesis assay using CCM-VEGF with different VEGF concentrations (1, 2, 4, and 8 ng/mL). Blank control, without any VEGF supplement added; suramin group, 4 ng/mL VEGF and 100 µM suramin added. Data shown as mean (SD) ( n = 4); ns, not significant; **** p < 0.05.

    Journal: Cells

    Article Title: Extracellular Vesicles Derived from VEGF mRNA-Engineered Mesenchymal Stem Cells Promote Endothelial Cell Survival

    doi: 10.3390/cells15080717

    Figure Lengend Snippet: Angiogenesis induced by VEGF secreted from VEGF-MSCs. Human umbilical vein endothelial cells labelled by CytoLight Green (GFP-HUVECs) were used for the development of angiogenic networks, and the length of networks was determined by the IncuCyte live-cell analysis system. ( A ) VEGF effectively induced the formation of vascular networks, which was able to be inhibited by suramin, a VEGF signaling inhibitor. Data shown as mean (SD) ( n = 6). ( B ) A concentration-dependent effect was shown in the angiogenesis assay using CCM-VEGF with different VEGF concentrations (1, 2, 4, and 8 ng/mL). Blank control, without any VEGF supplement added; suramin group, 4 ng/mL VEGF and 100 µM suramin added. Data shown as mean (SD) ( n = 4); ns, not significant; **** p < 0.05.

    Article Snippet: Image analysis was performed using the IncuCyte automated angiogenesis algorithm (Incucyte software, v2024B, Sartorius).

    Techniques: Cell Analysis, Concentration Assay, Angiogenesis Assay, Control