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alphafold2 program  (Deepmind Technologies Ltd)

 
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    Deepmind Technologies Ltd alphafold2 program
    Alphafold2 Program, supplied by Deepmind Technologies Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/alphafold2+program/alphafold3/pm40635001-235-9-12
    Average 86 stars, based on 1 article reviews
    alphafold2 program - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    other:

    Article Title: EpiMII: Structure-Aware Graph Neural Networks for MHC-II Epitope Generation
    Article Snippet: AF2, developed by DeepMind, is a neural network-based model that can predict protein structures with atomic accuracy and even accuracy in circumstances where no similar protein structure is available [ ].

    Construct:

    Article Title: Transcription cofactor Hes6 interacts with Twist1 to facilitate EMT and promote gastric carcinogenesis by activating the PI3K/AKT signaling
    Article Snippet: .. Subsequently, we used the protein modeling prediction function of AlphaFold3 ( https://deepmind.google/technologies/alphafold/ ) to construct an online protein interaction model of Hes6 and Twist1, and analyzed the contact residues and hydrogen bond interactions on the binding surface of the two molecules through molecular docking fitting ( B; ). ..

    Binding Assay:

    Article Title: Transcription cofactor Hes6 interacts with Twist1 to facilitate EMT and promote gastric carcinogenesis by activating the PI3K/AKT signaling
    Article Snippet: .. Subsequently, we used the protein modeling prediction function of AlphaFold3 ( https://deepmind.google/technologies/alphafold/ ) to construct an online protein interaction model of Hes6 and Twist1, and analyzed the contact residues and hydrogen bond interactions on the binding surface of the two molecules through molecular docking fitting ( B; ). ..

    Mutagenesis:

    Article Title: A CXCL20a point mutant enhances the immune protection induced by an inactivated GCRV vaccine in grass carp.
    Article Snippet: 30 Inactivated vaccines are widely used in fish disease control, but their limited 31 immunogenicity restricts their protective efficacy.. In this study, grass carp CXCL20a 32 was optimized by site-directed mutagenesis, and an S35R mutant (M-C20) was 33 evaluated as a molecular adjuvant for an inactivated grass carp reovirus (GCRV) 34 vaccine.. Structural prediction suggested that the S35R substitution may enhance the 35 interaction between CXCL20a and its receptor CXCR3.1b1, which was further 36 supported by pull-down analysis.



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    Relevant hits from <t> AlphaFold2 </t> predicted structures of Deep-Blue and Vp4 tail proteins submitted to the Dali server to retrieve related structures
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    Image Search Results


    Relevant hits from AlphaFold2 predicted structures of Deep-Blue and Vp4 tail proteins submitted to the Dali server to retrieve related structures

    Journal: Journal of Virology

    Article Title: Deciphering the adsorption machinery of Deep-Blue and Vp4, two myophages targeting members of the Bacillus cereus group

    doi: 10.1128/jvi.00745-24

    Figure Lengend Snippet: Relevant hits from AlphaFold2 predicted structures of Deep-Blue and Vp4 tail proteins submitted to the Dali server to retrieve related structures

    Article Snippet: Recently, the DeepMind’s machine-learning protein structure prediction program AlphaFold2 (AF2) ( ) has been proven to be extremely valuable in obtaining structures of phage tail proteins and of their complexes, as exemplified by the baseplate structure predictions of a few siphophages ( ).

    Techniques: Injection, Membrane