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CodonCode corporation aligner software
Aligner Software, supplied by CodonCode corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/Alignment+Software/aligner+software/pmc06916393-124-1-3
Average 90 stars, based on 1 article reviews
aligner software - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Polymerase Chain Reaction:

Article Title: Genetic etiology of Perrault syndrome in Iranian families: first report from Iran and literature review.
Article Snippet: Perrault syndrome (PS) is an extremely rare autosomal recessive condition characterized primarily by bilateral sensorineural hearing loss in both genders and primary or secondary ovarian failure in females.. Neurological features such as cerebral ataxia, peripheral neuropathy, epilepsy, and intellectual disability are frequent manifestations of PS.. To date, six genes have been reported to cause PS, and nearly 100 families have been identified worldwide with this syndrome.

Sequencing:

Article Title: Genetic etiology of Perrault syndrome in Iranian families: first report from Iran and literature review.
Article Snippet: Perrault syndrome (PS) is an extremely rare autosomal recessive condition characterized primarily by bilateral sensorineural hearing loss in both genders and primary or secondary ovarian failure in females.. Neurological features such as cerebral ataxia, peripheral neuropathy, epilepsy, and intellectual disability are frequent manifestations of PS.. To date, six genes have been reported to cause PS, and nearly 100 families have been identified worldwide with this syndrome.

Article Title: Isolation and characterization of Saprolegnia parasitica from cage-reared Pangasianodon hypophthalmus and its sensitivity to different antifungal compounds
Article Snippet: The PCR amplicons were separated in 1.5% agarose by gel electrophoresis, purified using a QIAquick® gel extraction kit (Qiagen, Germany) and sequenced by the Sanger method . .. Qualities of the nucleotide sequence chromatograms were examined using Sequence Scanner v1.0 software (Applied Biosystems, Inc.) and the forward and reverse sequences were aligned using CodonCode Aligner software (CodonCode Corporation) to make contigs, which were BLASTed in NCBI GenBank to find closet phylogenetic affiliations. ..

Article Title: Molecular Identification and the Hematological Findings of Four Novel Variants in Globin Genes in Jiangxi Province of Southern China.
Article Snippet: The DNA samples were subjected to sequencing analysis using an automated sequencer (ABI 310, Applied Biosystems, USA). .. Subsequently, the obtained DNA sequences were aligned with the reference sequence available on the UCSC Genome Browser website using CodonCode Aligner software (version 4.0). ..

Software:

Article Title: Genetic etiology of Perrault syndrome in Iranian families: first report from Iran and literature review.
Article Snippet: Perrault syndrome (PS) is an extremely rare autosomal recessive condition characterized primarily by bilateral sensorineural hearing loss in both genders and primary or secondary ovarian failure in females.. Neurological features such as cerebral ataxia, peripheral neuropathy, epilepsy, and intellectual disability are frequent manifestations of PS.. To date, six genes have been reported to cause PS, and nearly 100 families have been identified worldwide with this syndrome.

Article Title: Isolation and characterization of Saprolegnia parasitica from cage-reared Pangasianodon hypophthalmus and its sensitivity to different antifungal compounds
Article Snippet: The PCR amplicons were separated in 1.5% agarose by gel electrophoresis, purified using a QIAquick® gel extraction kit (Qiagen, Germany) and sequenced by the Sanger method . .. Qualities of the nucleotide sequence chromatograms were examined using Sequence Scanner v1.0 software (Applied Biosystems, Inc.) and the forward and reverse sequences were aligned using CodonCode Aligner software (CodonCode Corporation) to make contigs, which were BLASTed in NCBI GenBank to find closet phylogenetic affiliations. ..

Article Title: Research and characterization of Cryptosporidium spp. in the domestic cat (Felis catus): First description of C. felis in the state of Goiás and C. muris in the Midwest region of Brazil.
Article Snippet: With the increasingly close coexistence between pets and humans, coupled with reports of Cryptosporidium crossinfection between felines and their guardians, research aimed at understanding the epidemiology of these parasites in specific regions has become necessary.. The principal objective of this study was to undertake a molecular characterization of Cryptosporidium in fecal samples from felines in the state of Goiás, Brazil (which is unprecedented for the region), and to assess the risk factors involved in the infection of these animals in the aforementioned locale.. A total of 95 fecal samples were collected from domestic felines in the municipality of Goiânia, Goiás, Brazil.

Article Title: Improved Diagnostic Yield in Recessive Intellectual Disability Utilizing Systematic Whole Exome Sequencing Data Reanalysis.
Article Snippet: Recent advances in next generation sequencing (NGS) have positioned whole exome sequencing (WES) as an efficient firsttier method in genetic diagnosis.. However, despite the diagnostic yield of 35%–50% in intellectual disability (ID) many patients still remain undiagnosed due to inherent limitations and bioinformatic shortcomings.. In this study, we reanalyzed WES data from 159 Iranian families showing recessively inherited ID.

Article Title: Identification and functional analysis of a novel SMARCC2 splicing variant in a family with syndromic neurodevelopmental disorder
Article Snippet: Sanger sequencing was performed with both forward and reverse primers using an ABI3500 sequencer (Applied Biosystems, Foster City, CA, USA). .. Data were analyzed using the CodonCode Aligner software (CodonCode Corporation, Centerville, MA, USA). .. Peripheral blood mononuclear cells (PBMCs) were isolated from the proband and his healthy father using Ficoll-Paque plus (GE, Fairfield, CT), and total RNA was extracted using the QIAamp RNA Blood Mini Kit (Qiagen). cDNA was obtained using the Hifair AdvanceFast 1st Strand cDNA Synthesis SuperMix kit (Yeasen, Shanghai, China).

Article Title: Molecular Identification and the Hematological Findings of Four Novel Variants in Globin Genes in Jiangxi Province of Southern China.
Article Snippet: The DNA samples were subjected to sequencing analysis using an automated sequencer (ABI 310, Applied Biosystems, USA). .. Subsequently, the obtained DNA sequences were aligned with the reference sequence available on the UCSC Genome Browser website using CodonCode Aligner software (version 4.0). ..

Article Title: Advances in the Identification Methods of Food-Medicine Homologous Herbal Materials
Article Snippet: .. Sequences were assembled using CodonCode Aligner software (hDps://www.codoncode.com/aligner/, accessed on 9 February 2025), and alignment and Figure 11. ..

Article Title: Genetic structure of Trichinella britovi populations in wildlife of north and northeast Iran
Article Snippet: The resulting sequences were manually inspected and corrected using the BioEdit Sequencing Alignment Editor software (version 7.0.5) ( ). .. The forward and reverse sequences were assembled and checked for ambiguities using CodonCode Aligner software (CodonCode Corp.), and consensus sequences were generated. ..

Generated:

Article Title: Genetic structure of Trichinella britovi populations in wildlife of north and northeast Iran
Article Snippet: The resulting sequences were manually inspected and corrected using the BioEdit Sequencing Alignment Editor software (version 7.0.5) ( ). .. The forward and reverse sequences were assembled and checked for ambiguities using CodonCode Aligner software (CodonCode Corp.), and consensus sequences were generated. ..



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