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sequence analysis software package codoncode aligner  (CodonCode corporation)

 
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    Structured Review

    CodonCode corporation sequence analysis software package codoncode aligner
    Sequence Analysis Software Package Codoncode Aligner, supplied by CodonCode corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/Alignment+Software/aligner+sequence+analysis+software/pm25747846-7-6-9
    Average 90 stars, based on 1 article reviews
    sequence analysis software package codoncode aligner - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Sequencing:

    Article Title: Affected Kindred Analysis of Human X Chromosome Exomes to Identify Novel X-Linked Intellectual Disability Genes
    Article Snippet: Sanger sequencing for variant validation was conducted using the BigDye Terminator v3.1 Cycle Sequencing Kit on an ABI3100 automatic DNA analyzer (Applied Biosystems) following manufacturer’s instructions. .. Analysis was done on standard sequence alignment software (CodonCode and MacVector) followed by manual investigations of the chromatograms. ..

    Article Title: Autosomal recessive cone-rod dystrophy can be caused by mutations in the ATF6 gene
    Article Snippet: PCR products were directly sequenced using the Big Dye Terminator Cycle-Sequencing v3.1 Kit (Applied Biosystems, Foster City, CA, USA) and run on an automated capillary sequencer ABI 3130XL Genetic Analyzer (Applied Biosystems). .. The nucleotide sequences were analysed with sequence trace alignment software (CodonCode Aligner, CodonCode Corporation, Centerville, MA, USA). ..

    Article Title: Mutational dichotomy in desmoplastic malignant melanoma corroborated by multigene panel analysis.
    Article Snippet: For purification and sequencing PCR products were sent to the VBC-Biotech Service GmbH. .. Sequence analysis was performed with the CodonCode Aligner sequence analysis software (CodonCode Corporation, Centerville, MA, USA). .. SPSS Statistics 22, IBM, was used to calculate Fisher’s exact tests for statistical analyses of RETp and mutation frequencies between pure and mixed desmoplastic malignant melanomas.

    Article Title: Identification and characterization of a missense mutation in the O-linked β-N-acetylglucosamine (O-GlcNAc) transferase gene that segregates with X-linked intellectual disability
    Article Snippet: Sanger sequencing was used for validation, segregation analysis, and polymorphism studies of each mutation using the BigDye Terminator v3.1 Cycle Sequencing Kit on an ABI3100 automatic DNA analyzer (Applied Biosystems) following manufacturer’s instruction. .. Variant analysis was completed on standard sequence alignment software (CodonCode and MacVector) followed by manual investigations of the chromatograms. ..

    Article Title: RETRACTED: Natural diversity and distribution of species within the entomopathogenic fungal genus Metarhizium in forest ecosystems in Sichuan Province, China.
    Article Snippet: To understand the ecological roles and life history of the entomopathogenic fungi Metarhizium, its natural distribution must be known.. The ability to recognize a limited species using robust regions of the genome to illustrate species boundaries diagnostically and phylogenetically is a crucial step.. To investigate the phylogenetic relationship within Chinese Metarhizium isolates, an extensive sampling survey was conducted at 19 geographically separated locations in diverse forest regions of Sichuan Province.

    Article Title: Comparative study of mutations in SNP loci of K-RAS , hMLH1 and hMSH2 genes in neoplastic intestinal polyps and colorectal cancer
    Article Snippet: .. Genomic DNA extraction kit (SBS Genetech, China), PCR amplifier PTC220 (US BIO-RAD Company, United States), DYY-10C electrophoresis apparatus (Beijing Liuyi Instrument Factory, China), Bio-Rad Gel Doc XR System Gel Imaging System, ABI 3730XL Sequencer, Eppendorf 5417R/5810R centrifuge, and CodonCode Aligner sequence alignment analysis software were used in this study. ..

    Article Title: Rapid Decoding of Sequence-Specific Nuclease-Induced Heterozygous and Biallelic Mutations by Direct Sequencing of PCR Products.
    Article Snippet: .. A commercial sequence analysis software package, CodonCode Aligner (http:// www.codoncode.com/), has been developed to decode heterozygous DNA sequences by splitting the overlapping sequencing traces into pseudo-alleles. ..

    Software:

    Article Title: Affected Kindred Analysis of Human X Chromosome Exomes to Identify Novel X-Linked Intellectual Disability Genes
    Article Snippet: Sanger sequencing for variant validation was conducted using the BigDye Terminator v3.1 Cycle Sequencing Kit on an ABI3100 automatic DNA analyzer (Applied Biosystems) following manufacturer’s instructions. .. Analysis was done on standard sequence alignment software (CodonCode and MacVector) followed by manual investigations of the chromatograms. ..

    Article Title: Autosomal recessive cone-rod dystrophy can be caused by mutations in the ATF6 gene
    Article Snippet: PCR products were directly sequenced using the Big Dye Terminator Cycle-Sequencing v3.1 Kit (Applied Biosystems, Foster City, CA, USA) and run on an automated capillary sequencer ABI 3130XL Genetic Analyzer (Applied Biosystems). .. The nucleotide sequences were analysed with sequence trace alignment software (CodonCode Aligner, CodonCode Corporation, Centerville, MA, USA). ..

    Article Title: Mutational dichotomy in desmoplastic malignant melanoma corroborated by multigene panel analysis.
    Article Snippet: For purification and sequencing PCR products were sent to the VBC-Biotech Service GmbH. .. Sequence analysis was performed with the CodonCode Aligner sequence analysis software (CodonCode Corporation, Centerville, MA, USA). .. SPSS Statistics 22, IBM, was used to calculate Fisher’s exact tests for statistical analyses of RETp and mutation frequencies between pure and mixed desmoplastic malignant melanomas.

    Article Title: Identification and characterization of a missense mutation in the O-linked β-N-acetylglucosamine (O-GlcNAc) transferase gene that segregates with X-linked intellectual disability
    Article Snippet: Sanger sequencing was used for validation, segregation analysis, and polymorphism studies of each mutation using the BigDye Terminator v3.1 Cycle Sequencing Kit on an ABI3100 automatic DNA analyzer (Applied Biosystems) following manufacturer’s instruction. .. Variant analysis was completed on standard sequence alignment software (CodonCode and MacVector) followed by manual investigations of the chromatograms. ..

    Article Title: RETRACTED: Natural diversity and distribution of species within the entomopathogenic fungal genus Metarhizium in forest ecosystems in Sichuan Province, China.
    Article Snippet: To understand the ecological roles and life history of the entomopathogenic fungi Metarhizium, its natural distribution must be known.. The ability to recognize a limited species using robust regions of the genome to illustrate species boundaries diagnostically and phylogenetically is a crucial step.. To investigate the phylogenetic relationship within Chinese Metarhizium isolates, an extensive sampling survey was conducted at 19 geographically separated locations in diverse forest regions of Sichuan Province.

    Article Title: Comparative study of mutations in SNP loci of K-RAS , hMLH1 and hMSH2 genes in neoplastic intestinal polyps and colorectal cancer
    Article Snippet: .. Genomic DNA extraction kit (SBS Genetech, China), PCR amplifier PTC220 (US BIO-RAD Company, United States), DYY-10C electrophoresis apparatus (Beijing Liuyi Instrument Factory, China), Bio-Rad Gel Doc XR System Gel Imaging System, ABI 3730XL Sequencer, Eppendorf 5417R/5810R centrifuge, and CodonCode Aligner sequence alignment analysis software were used in this study. ..

    Article Title: Rapid Decoding of Sequence-Specific Nuclease-Induced Heterozygous and Biallelic Mutations by Direct Sequencing of PCR Products.
    Article Snippet: .. A commercial sequence analysis software package, CodonCode Aligner (http:// www.codoncode.com/), has been developed to decode heterozygous DNA sequences by splitting the overlapping sequencing traces into pseudo-alleles. ..

    Variant Assay:

    Article Title: Identification and characterization of a missense mutation in the O-linked β-N-acetylglucosamine (O-GlcNAc) transferase gene that segregates with X-linked intellectual disability
    Article Snippet: Sanger sequencing was used for validation, segregation analysis, and polymorphism studies of each mutation using the BigDye Terminator v3.1 Cycle Sequencing Kit on an ABI3100 automatic DNA analyzer (Applied Biosystems) following manufacturer’s instruction. .. Variant analysis was completed on standard sequence alignment software (CodonCode and MacVector) followed by manual investigations of the chromatograms. ..

    other:

    Article Title: Prevalence of carbapenemase-encoding genes including New Delhi metallo-β-lactamase in Acinetobacter species, Algeria.
    Article Snippet: Data collection and analysis were performed using CodonCode Aligner 3.7.1.1 sequencing analysis software.

    DNA Extraction:

    Article Title: Comparative study of mutations in SNP loci of K-RAS , hMLH1 and hMSH2 genes in neoplastic intestinal polyps and colorectal cancer
    Article Snippet: .. Genomic DNA extraction kit (SBS Genetech, China), PCR amplifier PTC220 (US BIO-RAD Company, United States), DYY-10C electrophoresis apparatus (Beijing Liuyi Instrument Factory, China), Bio-Rad Gel Doc XR System Gel Imaging System, ABI 3730XL Sequencer, Eppendorf 5417R/5810R centrifuge, and CodonCode Aligner sequence alignment analysis software were used in this study. ..

    Polymerase Chain Reaction:

    Article Title: Comparative study of mutations in SNP loci of K-RAS , hMLH1 and hMSH2 genes in neoplastic intestinal polyps and colorectal cancer
    Article Snippet: .. Genomic DNA extraction kit (SBS Genetech, China), PCR amplifier PTC220 (US BIO-RAD Company, United States), DYY-10C electrophoresis apparatus (Beijing Liuyi Instrument Factory, China), Bio-Rad Gel Doc XR System Gel Imaging System, ABI 3730XL Sequencer, Eppendorf 5417R/5810R centrifuge, and CodonCode Aligner sequence alignment analysis software were used in this study. ..

    Electrophoresis:

    Article Title: Comparative study of mutations in SNP loci of K-RAS , hMLH1 and hMSH2 genes in neoplastic intestinal polyps and colorectal cancer
    Article Snippet: .. Genomic DNA extraction kit (SBS Genetech, China), PCR amplifier PTC220 (US BIO-RAD Company, United States), DYY-10C electrophoresis apparatus (Beijing Liuyi Instrument Factory, China), Bio-Rad Gel Doc XR System Gel Imaging System, ABI 3730XL Sequencer, Eppendorf 5417R/5810R centrifuge, and CodonCode Aligner sequence alignment analysis software were used in this study. ..

    Imaging:

    Article Title: Comparative study of mutations in SNP loci of K-RAS , hMLH1 and hMSH2 genes in neoplastic intestinal polyps and colorectal cancer
    Article Snippet: .. Genomic DNA extraction kit (SBS Genetech, China), PCR amplifier PTC220 (US BIO-RAD Company, United States), DYY-10C electrophoresis apparatus (Beijing Liuyi Instrument Factory, China), Bio-Rad Gel Doc XR System Gel Imaging System, ABI 3730XL Sequencer, Eppendorf 5417R/5810R centrifuge, and CodonCode Aligner sequence alignment analysis software were used in this study. ..



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