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custom-designed combimatrix 4x2k arrays  (CombiMatrix)

 
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    CombiMatrix custom-designed combimatrix 4x2k arrays
    Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and <t>4x2k</t> SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).
    Custom Designed Combimatrix 4x2k Arrays, supplied by CombiMatrix, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/4x2k+custom+array/4x2k+custom+array/pmc03176531-549-4-3
    Average 90 stars, based on 1 article reviews
    custom-designed combimatrix 4x2k arrays - by Bioz Stars, 2026-09
    90/100 stars

    Images

    1) Product Images from "Oxidative Stress Survival in a Clinical Saccharomyces cerevisiae Isolate Is Influenced by a Major Quantitative Trait Nucleotide"

    Article Title: Oxidative Stress Survival in a Clinical Saccharomyces cerevisiae Isolate Is Influenced by a Major Quantitative Trait Nucleotide

    Journal: Genetics

    doi: 10.1534/genetics.111.128256

    Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and 4x2k SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).
    Figure Legend Snippet: Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and 4x2k SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).

    Techniques Used: Diagnostic Assay

    Related Articles

    Microarray:

    Article Title: Microarray having a base cleavable linker
    Article Snippet: .. In this example, a CombiMatrix CustomArrayTM 12K microarray was used to synthesize oligonucleotides attached to the microarray through a base-cleavable linker. ..

    Article Title: Microarray having a base cleavable linker
    Article Snippet: .. In this example, a CombiMatrix CustomArrayTM 12 k microarray was used to synthesize DNA attached to the microarray through a 10-T spacer and a base-cleavable sulfonyl linker. ..

    Article Title: Microarray having a base cleavable linker
    Article Snippet: .. In this example, a CombiMatrix CustomArrayTM 12 k microarray was used to synthesize DNA attached to the microarray through a 10-T (SEQ ID NO:1) spacer and a base-cleavable sulfonyl linker. ..

    Hybridization:

    Article Title: Seasonal Changes in Bacterial and Archaeal Gene Expression Patterns across Salinity Gradients in the Columbia River Coastal Margin
    Article Snippet: After completion of the probe design, the probe sets were synthesized in situ on the surface of CombiMatrix CustomArrayTM 12K and 4X2K oligonucleotide microarrays (described in www.combimatrix.com ). .. Hybridization of CustomArrayTM microarrays was performed as recommended by the manufacturer ( http://www.combimatrix.com/docs/PTL005_00_4x2K_Hyb_Imaging.pdf ), using the single-color experimental scheme. ..

    other:

    Article Title: Serially deposited biomolecules
    Article Snippet: Lower Limits of Detection To further explore the lower limits of detection of this system, 4×2K arrays (CombiMatrix CustomArray Microarray 12 k) were constructed with anti-ricin antibody as above.

    Article Title: Multiplex microarray of serially deposited biomolecules on a microarray
    Article Snippet: Lower Limits of Detection To further explore the lower limits of detection of this system, 4×2K arrays (CombiMatrix CustomArray Microarray 12 k) were constructed with anti-ricin antibody as above.



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    Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and <t>4x2k</t> SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).
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    Image Search Results


    Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and 4x2k SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).

    Journal: Genetics

    Article Title: Oxidative Stress Survival in a Clinical Saccharomyces cerevisiae Isolate Is Influenced by a Major Quantitative Trait Nucleotide

    doi: 10.1534/genetics.111.128256

    Figure Lengend Snippet: Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and 4x2k SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).

    Article Snippet: SSA via custom-designed Combimatrix 4x2k arrays provides an economic application that facilitates genotyping of segregants of any cross between strains whose genomes have been sequenced.

    Techniques: Diagnostic Assay

    Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and 4x2k SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).

    Journal: Genetics

    Article Title: Oxidative Stress Survival in a Clinical Saccharomyces cerevisiae Isolate Is Influenced by a Major Quantitative Trait Nucleotide

    doi: 10.1534/genetics.111.128256

    Figure Lengend Snippet: Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and 4x2k SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).

    Article Snippet: The 22 BCI segregants were separately hybridized to the 4x2k Combimatrix custom-designed array and compared to both parental strains.

    Techniques: Diagnostic Assay

    Probe category and the number of probes on the two generations of microarrays

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    Article Title: Use of Cellular CRISPR (Clusters of Regularly Interspaced Short Palindromic Repeats) Spacer-Based Microarrays for Detection of Viruses in Environmental Samples ▿ †

    doi: 10.1128/AEM.01109-10

    Figure Lengend Snippet: Probe category and the number of probes on the two generations of microarrays

    Article Snippet: The second generation of microarrays was expanded to include all of the CRISPR spacer sequences derived from CHANN041 and NL10 cellular metagenomes on the CombiMatrix 4X2K custom array.

    Techniques: CRISPR