Review




Structured Review

Accelrys 3d structure model
(a) Graphical result from secondary structure prediction of Hyde C1 using PSIPRED. (b) Helical wheel diagram of Hyde C1 and polar and non-polar amino acids, and their locations in peptide can be observed (c) The Hyde C1 <t>3D</t> structure contains α-helix, as predicted by I-TASSER. The 3D structure model visualized <t>using</t> <t>Accelrys</t> discovery studio visualizer software.
3d Structure Model, supplied by Accelrys, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/3d+structural+model/3d+structure/pmc12480717-66-1-6
Average 86 stars, based on 1 article reviews
3d structure model - by Bioz Stars, 2026-09
86/100 stars

Images

1) Product Images from "Discovery of hyde C1 a broad spectrum antimicrobial peptide derived from chicory"

Article Title: Discovery of hyde C1 a broad spectrum antimicrobial peptide derived from chicory

Journal: Scientific Reports

doi: 10.1038/s41598-025-19166-5

(a) Graphical result from secondary structure prediction of Hyde C1 using PSIPRED. (b) Helical wheel diagram of Hyde C1 and polar and non-polar amino acids, and their locations in peptide can be observed (c) The Hyde C1 3D structure contains α-helix, as predicted by I-TASSER. The 3D structure model visualized using Accelrys discovery studio visualizer software.
Figure Legend Snippet: (a) Graphical result from secondary structure prediction of Hyde C1 using PSIPRED. (b) Helical wheel diagram of Hyde C1 and polar and non-polar amino acids, and their locations in peptide can be observed (c) The Hyde C1 3D structure contains α-helix, as predicted by I-TASSER. The 3D structure model visualized using Accelrys discovery studio visualizer software.

Techniques Used: Software

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Article Snippet: Similarly, the 2D structure was visualised in Biovia Discovery Studio.

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Sequencing:

Article Title: CRISPR-cas systems for genome editing
Article Snippet: .. In the next step, all detected sequence-structure relationships and the conserved motifs were threaded into a 3D structure template with MODELLER or manually mapped into the known structural reference on Discovery Studio (BIOVIA) and Pymol (Schrodinger). ..

Article Title: CRISPR-Cas systems for genome editing
Article Snippet: .. In the next step, all detected sequence-structure relationships and the conserved motifs were threaded into a 3D structure template with MODELLER or manually mapped into the known structural reference on DiscoveryStudio (BIOVIA) and Pymol (Schrodinger). ..

Concentration Assay:

Article Title: The surface and micellar properties of ethanolamine based surface active ionic liquids in the presence of drug aspirin
Article Snippet: .. Fig. 2 Specific conductivity ( κ ) of SAILs in a fixed concentration of aqueous aspirin solutions (0.0300 mol·kg -1 ) at 298 K. Fig. 3 Surface tension ( γ ) of studied SAILs in aqueous aspirin solutions with 0.0100 molality concentrations of aspirin (mol·kg −1 ) at 298 K. Fig. 4 Molar conductivities ( Λ ) of [2-HEA][Ole] in aqueous aspirin solution with different molalities of aspirin (⬤ 0.0000 mol kg -1 , ■ 0.0010 mol kg −1 , ♦ 0.0300 mol kg −1 , ▲ 0.0500 mol kg −1 ) at 298 K. Fig. 5 Optimized molecular structure (obtained from Biovia material studio Dmol 3 and σ -profile of : ( a ) Aspirin, ( b ) [2-HEA][Ole], ( c ) [BHEA][Ole], ( d ) [THEA][Ole], and ( e ) σ -profile plots from Dmol 3 and COSMO result. ..

Software:

Article Title: Discovery of hyde C1 a broad spectrum antimicrobial peptide derived from chicory
Article Snippet: .. The 3D structure model visualized using Accelrys discovery studio visualizer software. ..

Real-time Polymerase Chain Reaction:

Article Title: Robinin decreases myocardial ischemia/reperfusion injury via Nrf2 anti-oxidative effects mediated by Akt/GSK3β/Fyn in hypercholesterolemic rats.
Article Snippet: The preliminary docking investigation was conducted using Autodock Vina (version 1.5.6). .. The 3D structure (Biovia Dassault system, Inc., USA) was viewed using Discovery Studio Version 4.5, which also removed the water molecule's interaction Table 1 Primer sequences used in real-time PCR assays Primers Sequences Akt 5′ T G G A C T A C C T G C A C T C G G A G A A -3′ 5′ G T G C C G C A A A A G G T C T T C A T G G-3′ GSK-3β 5′ C C G A C T A A C A C C A C T G G A A G C T-3′ 5′ A G G A T G G T A G C C A G A G G T G G A T-3′ NQO-1 5′ C C T G C C A T T C T G A A A G G C T G G T-3′ 5′ G T G G T G A T G G A A A G C A C T G C C T-3′ HO-1 5′- C C A G G C A G A G A A T G C T G A G T T C-3′ 5′- A A G A C T G G G C T C T C C T T G T T G C-3 Nrf-2 5′ C A C A T C C A G T C A G A A A C C A G T G G 3′ 5′ G G A A T G T C T G C G C C A A A A G C T G-3′ n-Fyn 5′ C T G G T C A C C A A A G G A A G A G T G C-3′ 5′ G G T C C T T T T T C C A G C A G T G G A T C-3′ GAPDH 5′GAC GGC CGC ATC TTC TTG T-3′ 5′ CAC ACC GAC CTT CAC CAT TTT3′ 1 3 301 Page 4 of 18 Journal of Molecular Histology (2025) 56:301 ..



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(a) Graphical result from secondary structure prediction of Hyde C1 using PSIPRED. (b) Helical wheel diagram of Hyde C1 and polar and non-polar amino acids, and their locations in peptide can be observed (c) The Hyde C1 <t>3D</t> structure contains α-helix, as predicted by I-TASSER. The 3D structure model visualized <t>using</t> <t>Accelrys</t> discovery studio visualizer software.
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(a) Graphical result from secondary structure prediction of Hyde C1 using PSIPRED. (b) Helical wheel diagram of Hyde C1 and polar and non-polar amino acids, and their locations in peptide can be observed (c) The Hyde C1 <t>3D</t> structure contains α-helix, as predicted by I-TASSER. The 3D structure model visualized <t>using</t> <t>Accelrys</t> discovery studio visualizer software.
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(a) Graphical result from secondary structure prediction of Hyde C1 using PSIPRED. (b) Helical wheel diagram of Hyde C1 and polar and non-polar amino acids, and their locations in peptide can be observed (c) The Hyde C1 <t>3D</t> structure contains α-helix, as predicted by I-TASSER. The 3D structure model visualized <t>using</t> <t>Accelrys</t> discovery studio visualizer software.
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(a) Graphical result from secondary structure prediction of Hyde C1 using PSIPRED. (b) Helical wheel diagram of Hyde C1 and polar and non-polar amino acids, and their locations in peptide can be observed (c) The Hyde C1 <t>3D</t> structure contains α-helix, as predicted by I-TASSER. The 3D structure model visualized <t>using</t> <t>Accelrys</t> discovery studio visualizer software.
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(a) Graphical result from secondary structure prediction of Hyde C1 using PSIPRED. (b) Helical wheel diagram of Hyde C1 and polar and non-polar amino acids, and their locations in peptide can be observed (c) The Hyde C1 <t>3D</t> structure contains α-helix, as predicted by I-TASSER. The 3D structure model visualized <t>using</t> <t>Accelrys</t> discovery studio visualizer software.
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Image Search Results


(a) Graphical result from secondary structure prediction of Hyde C1 using PSIPRED. (b) Helical wheel diagram of Hyde C1 and polar and non-polar amino acids, and their locations in peptide can be observed (c) The Hyde C1 3D structure contains α-helix, as predicted by I-TASSER. The 3D structure model visualized using Accelrys discovery studio visualizer software.

Journal: Scientific Reports

Article Title: Discovery of hyde C1 a broad spectrum antimicrobial peptide derived from chicory

doi: 10.1038/s41598-025-19166-5

Figure Lengend Snippet: (a) Graphical result from secondary structure prediction of Hyde C1 using PSIPRED. (b) Helical wheel diagram of Hyde C1 and polar and non-polar amino acids, and their locations in peptide can be observed (c) The Hyde C1 3D structure contains α-helix, as predicted by I-TASSER. The 3D structure model visualized using Accelrys discovery studio visualizer software.

Article Snippet: The 3D structure model visualized using Accelrys discovery studio visualizer software.

Techniques: Software