Review




Structured Review

Amira Pharmaceuticals 3d structural analysis software
3d Structural Analysis Software, supplied by Amira Pharmaceuticals, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/3d+structural+analysis+software/3d+structural+analysis+software/pm39166760-70-6-10
Average 90 stars, based on 1 article reviews
3d structural analysis software - by Bioz Stars, 2026-10
90/100 stars

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Related Articles

Magnetic Resonance Imaging:

Article Title: Four-Dimensional Superimposition Techniques to Compose Dental Dynamic Virtual Patients: A Systematic Review
Article Snippet: Dai F [ ] /2016 , Case report , One subject , 1. DS (STL) 2. Spiral CT (DICOM) + 3D software (STL) 3. Ultrasonic axiograph Arcus Digma system (TXT file) 4. RE software 5. Mathematical software MATLAB 7.0 + Amira software FE modeling 6. Analysis software Ansys 15.0 , 1. (Roland DG., Hamamatsu, Japan) 2. (PHILIPS Inc., Andover, MA, USA) + Amira5.2.2 (Visage Imaging Inc., SD, CA, USA) 3. (KaVo, Biberach, Germany) 4. Rapidform 2006 (Inus Technology Inc., Seoul, Republic of Korea) 5. MATLAB 7.0 (Math Works Inc., Natick, MA, USA) 6. (ANSYS Inc., Canonsburg, PA, USA) , 1. The upper cast with the bite fork and the occlusion 2. 3D bone, muscle, and teeth 3. Mandibular movement 4. Static model of the masticatory system 5. Dynamic model with a simulation of mandibular movement 6. The FE masticatory system model , 1. Casts + casts made in occlusion (IOS + IOS): regional registration method 2. Registration of the different coordinate systems: based on the global coordinates + the (bite fork) , Digital dentistry Orthodontics , 1. Feasibility 2. Accuracy: (1) the static masticatory system model: small difference (0.32 ± 0.25 mm) indicated good accuracy (2) the FE model showed accuracy similarity to that of the T-Scan (3) The accuracy of the 3D Arcus Digma system: 0.1 mm and 1.5° , The sample size needs to be expanded for further validation.. .. Savoldelli C [ ]/2012 , Non-randomized controlled experimental study: (Humans) , One subject , 1. Multislice CT with a splint 2. MRI with a splint 3. 3D image segmentation software 4. FE analysis software , 1. (General Electric Medical System, UWM, WI, USA) 2. Gyroscan Intera 1.5-T MR system (Philips Medical Systems, Best, NL) 3. (AMIRA ® ) (Visage Imaging, Inc., SD, CA, USA) 4. FORGE (Transvalor, Glpre 2005, Antibes, France) , 1. Bone components of skull and mandible, dental arches when the jaw was opened 10 mm. 2. Soft tissues such as joint discs, temporomandibular capsules, and ligaments when the jaw was opened 10 mm. 3. Virtual models with surface and volume meshes of the above components 4. (1) Boundary conditions for closing jaw simulations by different jaw muscles (2) Stress distribution in both joint discs , MRI + CT: based on the anatomical structures (Hounsfield unit values + manual identification) , Digital dentistry Orthodontics , 1. Feasibility 2. Accuracy (high): stress levels (5.1 MPa) were within the range of reported stress (0.85–9.9 MPa) , 1. The material behavior of the articular discs was a linear elastic model and not a non-linear material model. 2. the sample size needs to be expanded for further validation.. .. Terajima M [ ]/2008 , Case report: method description (Humans) , One subject , 1. CT + image processing software + visualization software 2. DS (VIVID format) 3. Jaw-movement analyzer 4. Image measurement software , 1. CT scanner (Aquilion, Toshiba Medical, Tokyo, Japan) + (Mimics version 7.0, CDI, Tokyo, Japan) + (Magics, CDI, Tokyo, Japan) 2. (VIVID 900, Minolta, Tokyo, Japan) 3. (TRI-MET, Tokyo-Shizaisha, Tokyo, Japan) 4. (3D-Rugle, Medic Engineering, Kyoto, Japan) , 1. Reconstruction of images integrating the CT, the 3D dental surface, ceramic spheres 2. Dental surface + ceramic spheres 3. Mandibular movement 4. Condyle position relative to the condylar fossa + contact areas during jaw movements , 1. CT +DS: fiducial markers based (ceramic balls) 2. Registration of 3D maxillofacial-dental images and that in the TRI-MET system: the least squares method , Digital dentistry Orthodontics Orthognathic surgery , Feasibility , Further studies are needed to validate its accuracy..

Software:

Article Title: Four-Dimensional Superimposition Techniques to Compose Dental Dynamic Virtual Patients: A Systematic Review
Article Snippet: Dai F [ ] /2016 , Case report , One subject , 1. DS (STL) 2. Spiral CT (DICOM) + 3D software (STL) 3. Ultrasonic axiograph Arcus Digma system (TXT file) 4. RE software 5. Mathematical software MATLAB 7.0 + Amira software FE modeling 6. Analysis software Ansys 15.0 , 1. (Roland DG., Hamamatsu, Japan) 2. (PHILIPS Inc., Andover, MA, USA) + Amira5.2.2 (Visage Imaging Inc., SD, CA, USA) 3. (KaVo, Biberach, Germany) 4. Rapidform 2006 (Inus Technology Inc., Seoul, Republic of Korea) 5. MATLAB 7.0 (Math Works Inc., Natick, MA, USA) 6. (ANSYS Inc., Canonsburg, PA, USA) , 1. The upper cast with the bite fork and the occlusion 2. 3D bone, muscle, and teeth 3. Mandibular movement 4. Static model of the masticatory system 5. Dynamic model with a simulation of mandibular movement 6. The FE masticatory system model , 1. Casts + casts made in occlusion (IOS + IOS): regional registration method 2. Registration of the different coordinate systems: based on the global coordinates + the (bite fork) , Digital dentistry Orthodontics , 1. Feasibility 2. Accuracy: (1) the static masticatory system model: small difference (0.32 ± 0.25 mm) indicated good accuracy (2) the FE model showed accuracy similarity to that of the T-Scan (3) The accuracy of the 3D Arcus Digma system: 0.1 mm and 1.5° , The sample size needs to be expanded for further validation.. .. Savoldelli C [ ]/2012 , Non-randomized controlled experimental study: (Humans) , One subject , 1. Multislice CT with a splint 2. MRI with a splint 3. 3D image segmentation software 4. FE analysis software , 1. (General Electric Medical System, UWM, WI, USA) 2. Gyroscan Intera 1.5-T MR system (Philips Medical Systems, Best, NL) 3. (AMIRA ® ) (Visage Imaging, Inc., SD, CA, USA) 4. FORGE (Transvalor, Glpre 2005, Antibes, France) , 1. Bone components of skull and mandible, dental arches when the jaw was opened 10 mm. 2. Soft tissues such as joint discs, temporomandibular capsules, and ligaments when the jaw was opened 10 mm. 3. Virtual models with surface and volume meshes of the above components 4. (1) Boundary conditions for closing jaw simulations by different jaw muscles (2) Stress distribution in both joint discs , MRI + CT: based on the anatomical structures (Hounsfield unit values + manual identification) , Digital dentistry Orthodontics , 1. Feasibility 2. Accuracy (high): stress levels (5.1 MPa) were within the range of reported stress (0.85–9.9 MPa) , 1. The material behavior of the articular discs was a linear elastic model and not a non-linear material model. 2. the sample size needs to be expanded for further validation.. .. Terajima M [ ]/2008 , Case report: method description (Humans) , One subject , 1. CT + image processing software + visualization software 2. DS (VIVID format) 3. Jaw-movement analyzer 4. Image measurement software , 1. CT scanner (Aquilion, Toshiba Medical, Tokyo, Japan) + (Mimics version 7.0, CDI, Tokyo, Japan) + (Magics, CDI, Tokyo, Japan) 2. (VIVID 900, Minolta, Tokyo, Japan) 3. (TRI-MET, Tokyo-Shizaisha, Tokyo, Japan) 4. (3D-Rugle, Medic Engineering, Kyoto, Japan) , 1. Reconstruction of images integrating the CT, the 3D dental surface, ceramic spheres 2. Dental surface + ceramic spheres 3. Mandibular movement 4. Condyle position relative to the condylar fossa + contact areas during jaw movements , 1. CT +DS: fiducial markers based (ceramic balls) 2. Registration of 3D maxillofacial-dental images and that in the TRI-MET system: the least squares method , Digital dentistry Orthodontics Orthognathic surgery , Feasibility , Further studies are needed to validate its accuracy..

Article Title: Higher solubility and lower onset temperature of protein denaturation increase the osteoconductive capacity of collagen membranes: A preclinical in vivo study.
Article Snippet: The evaluation of the reconstructed 2D images was made with 3D Segmentation of Volume of Interest (Gauss Sigma at 0.8 and Gauss support at 1). .. Images were reconstructed and analyzed using 3D structural analysis software (Amira, Visualization Sciences Group, Düsseldorf, Germany). ..

Capsules:

Article Title: Four-Dimensional Superimposition Techniques to Compose Dental Dynamic Virtual Patients: A Systematic Review
Article Snippet: Dai F [ ] /2016 , Case report , One subject , 1. DS (STL) 2. Spiral CT (DICOM) + 3D software (STL) 3. Ultrasonic axiograph Arcus Digma system (TXT file) 4. RE software 5. Mathematical software MATLAB 7.0 + Amira software FE modeling 6. Analysis software Ansys 15.0 , 1. (Roland DG., Hamamatsu, Japan) 2. (PHILIPS Inc., Andover, MA, USA) + Amira5.2.2 (Visage Imaging Inc., SD, CA, USA) 3. (KaVo, Biberach, Germany) 4. Rapidform 2006 (Inus Technology Inc., Seoul, Republic of Korea) 5. MATLAB 7.0 (Math Works Inc., Natick, MA, USA) 6. (ANSYS Inc., Canonsburg, PA, USA) , 1. The upper cast with the bite fork and the occlusion 2. 3D bone, muscle, and teeth 3. Mandibular movement 4. Static model of the masticatory system 5. Dynamic model with a simulation of mandibular movement 6. The FE masticatory system model , 1. Casts + casts made in occlusion (IOS + IOS): regional registration method 2. Registration of the different coordinate systems: based on the global coordinates + the (bite fork) , Digital dentistry Orthodontics , 1. Feasibility 2. Accuracy: (1) the static masticatory system model: small difference (0.32 ± 0.25 mm) indicated good accuracy (2) the FE model showed accuracy similarity to that of the T-Scan (3) The accuracy of the 3D Arcus Digma system: 0.1 mm and 1.5° , The sample size needs to be expanded for further validation.. .. Savoldelli C [ ]/2012 , Non-randomized controlled experimental study: (Humans) , One subject , 1. Multislice CT with a splint 2. MRI with a splint 3. 3D image segmentation software 4. FE analysis software , 1. (General Electric Medical System, UWM, WI, USA) 2. Gyroscan Intera 1.5-T MR system (Philips Medical Systems, Best, NL) 3. (AMIRA ® ) (Visage Imaging, Inc., SD, CA, USA) 4. FORGE (Transvalor, Glpre 2005, Antibes, France) , 1. Bone components of skull and mandible, dental arches when the jaw was opened 10 mm. 2. Soft tissues such as joint discs, temporomandibular capsules, and ligaments when the jaw was opened 10 mm. 3. Virtual models with surface and volume meshes of the above components 4. (1) Boundary conditions for closing jaw simulations by different jaw muscles (2) Stress distribution in both joint discs , MRI + CT: based on the anatomical structures (Hounsfield unit values + manual identification) , Digital dentistry Orthodontics , 1. Feasibility 2. Accuracy (high): stress levels (5.1 MPa) were within the range of reported stress (0.85–9.9 MPa) , 1. The material behavior of the articular discs was a linear elastic model and not a non-linear material model. 2. the sample size needs to be expanded for further validation.. .. Terajima M [ ]/2008 , Case report: method description (Humans) , One subject , 1. CT + image processing software + visualization software 2. DS (VIVID format) 3. Jaw-movement analyzer 4. Image measurement software , 1. CT scanner (Aquilion, Toshiba Medical, Tokyo, Japan) + (Mimics version 7.0, CDI, Tokyo, Japan) + (Magics, CDI, Tokyo, Japan) 2. (VIVID 900, Minolta, Tokyo, Japan) 3. (TRI-MET, Tokyo-Shizaisha, Tokyo, Japan) 4. (3D-Rugle, Medic Engineering, Kyoto, Japan) , 1. Reconstruction of images integrating the CT, the 3D dental surface, ceramic spheres 2. Dental surface + ceramic spheres 3. Mandibular movement 4. Condyle position relative to the condylar fossa + contact areas during jaw movements , 1. CT +DS: fiducial markers based (ceramic balls) 2. Registration of 3D maxillofacial-dental images and that in the TRI-MET system: the least squares method , Digital dentistry Orthodontics Orthognathic surgery , Feasibility , Further studies are needed to validate its accuracy..

Muscles:

Article Title: Four-Dimensional Superimposition Techniques to Compose Dental Dynamic Virtual Patients: A Systematic Review
Article Snippet: Dai F [ ] /2016 , Case report , One subject , 1. DS (STL) 2. Spiral CT (DICOM) + 3D software (STL) 3. Ultrasonic axiograph Arcus Digma system (TXT file) 4. RE software 5. Mathematical software MATLAB 7.0 + Amira software FE modeling 6. Analysis software Ansys 15.0 , 1. (Roland DG., Hamamatsu, Japan) 2. (PHILIPS Inc., Andover, MA, USA) + Amira5.2.2 (Visage Imaging Inc., SD, CA, USA) 3. (KaVo, Biberach, Germany) 4. Rapidform 2006 (Inus Technology Inc., Seoul, Republic of Korea) 5. MATLAB 7.0 (Math Works Inc., Natick, MA, USA) 6. (ANSYS Inc., Canonsburg, PA, USA) , 1. The upper cast with the bite fork and the occlusion 2. 3D bone, muscle, and teeth 3. Mandibular movement 4. Static model of the masticatory system 5. Dynamic model with a simulation of mandibular movement 6. The FE masticatory system model , 1. Casts + casts made in occlusion (IOS + IOS): regional registration method 2. Registration of the different coordinate systems: based on the global coordinates + the (bite fork) , Digital dentistry Orthodontics , 1. Feasibility 2. Accuracy: (1) the static masticatory system model: small difference (0.32 ± 0.25 mm) indicated good accuracy (2) the FE model showed accuracy similarity to that of the T-Scan (3) The accuracy of the 3D Arcus Digma system: 0.1 mm and 1.5° , The sample size needs to be expanded for further validation.. .. Savoldelli C [ ]/2012 , Non-randomized controlled experimental study: (Humans) , One subject , 1. Multislice CT with a splint 2. MRI with a splint 3. 3D image segmentation software 4. FE analysis software , 1. (General Electric Medical System, UWM, WI, USA) 2. Gyroscan Intera 1.5-T MR system (Philips Medical Systems, Best, NL) 3. (AMIRA ® ) (Visage Imaging, Inc., SD, CA, USA) 4. FORGE (Transvalor, Glpre 2005, Antibes, France) , 1. Bone components of skull and mandible, dental arches when the jaw was opened 10 mm. 2. Soft tissues such as joint discs, temporomandibular capsules, and ligaments when the jaw was opened 10 mm. 3. Virtual models with surface and volume meshes of the above components 4. (1) Boundary conditions for closing jaw simulations by different jaw muscles (2) Stress distribution in both joint discs , MRI + CT: based on the anatomical structures (Hounsfield unit values + manual identification) , Digital dentistry Orthodontics , 1. Feasibility 2. Accuracy (high): stress levels (5.1 MPa) were within the range of reported stress (0.85–9.9 MPa) , 1. The material behavior of the articular discs was a linear elastic model and not a non-linear material model. 2. the sample size needs to be expanded for further validation.. .. Terajima M [ ]/2008 , Case report: method description (Humans) , One subject , 1. CT + image processing software + visualization software 2. DS (VIVID format) 3. Jaw-movement analyzer 4. Image measurement software , 1. CT scanner (Aquilion, Toshiba Medical, Tokyo, Japan) + (Mimics version 7.0, CDI, Tokyo, Japan) + (Magics, CDI, Tokyo, Japan) 2. (VIVID 900, Minolta, Tokyo, Japan) 3. (TRI-MET, Tokyo-Shizaisha, Tokyo, Japan) 4. (3D-Rugle, Medic Engineering, Kyoto, Japan) , 1. Reconstruction of images integrating the CT, the 3D dental surface, ceramic spheres 2. Dental surface + ceramic spheres 3. Mandibular movement 4. Condyle position relative to the condylar fossa + contact areas during jaw movements , 1. CT +DS: fiducial markers based (ceramic balls) 2. Registration of 3D maxillofacial-dental images and that in the TRI-MET system: the least squares method , Digital dentistry Orthodontics Orthognathic surgery , Feasibility , Further studies are needed to validate its accuracy..

Biomarker Discovery:

Article Title: Four-Dimensional Superimposition Techniques to Compose Dental Dynamic Virtual Patients: A Systematic Review
Article Snippet: Dai F [ ] /2016 , Case report , One subject , 1. DS (STL) 2. Spiral CT (DICOM) + 3D software (STL) 3. Ultrasonic axiograph Arcus Digma system (TXT file) 4. RE software 5. Mathematical software MATLAB 7.0 + Amira software FE modeling 6. Analysis software Ansys 15.0 , 1. (Roland DG., Hamamatsu, Japan) 2. (PHILIPS Inc., Andover, MA, USA) + Amira5.2.2 (Visage Imaging Inc., SD, CA, USA) 3. (KaVo, Biberach, Germany) 4. Rapidform 2006 (Inus Technology Inc., Seoul, Republic of Korea) 5. MATLAB 7.0 (Math Works Inc., Natick, MA, USA) 6. (ANSYS Inc., Canonsburg, PA, USA) , 1. The upper cast with the bite fork and the occlusion 2. 3D bone, muscle, and teeth 3. Mandibular movement 4. Static model of the masticatory system 5. Dynamic model with a simulation of mandibular movement 6. The FE masticatory system model , 1. Casts + casts made in occlusion (IOS + IOS): regional registration method 2. Registration of the different coordinate systems: based on the global coordinates + the (bite fork) , Digital dentistry Orthodontics , 1. Feasibility 2. Accuracy: (1) the static masticatory system model: small difference (0.32 ± 0.25 mm) indicated good accuracy (2) the FE model showed accuracy similarity to that of the T-Scan (3) The accuracy of the 3D Arcus Digma system: 0.1 mm and 1.5° , The sample size needs to be expanded for further validation.. .. Savoldelli C [ ]/2012 , Non-randomized controlled experimental study: (Humans) , One subject , 1. Multislice CT with a splint 2. MRI with a splint 3. 3D image segmentation software 4. FE analysis software , 1. (General Electric Medical System, UWM, WI, USA) 2. Gyroscan Intera 1.5-T MR system (Philips Medical Systems, Best, NL) 3. (AMIRA ® ) (Visage Imaging, Inc., SD, CA, USA) 4. FORGE (Transvalor, Glpre 2005, Antibes, France) , 1. Bone components of skull and mandible, dental arches when the jaw was opened 10 mm. 2. Soft tissues such as joint discs, temporomandibular capsules, and ligaments when the jaw was opened 10 mm. 3. Virtual models with surface and volume meshes of the above components 4. (1) Boundary conditions for closing jaw simulations by different jaw muscles (2) Stress distribution in both joint discs , MRI + CT: based on the anatomical structures (Hounsfield unit values + manual identification) , Digital dentistry Orthodontics , 1. Feasibility 2. Accuracy (high): stress levels (5.1 MPa) were within the range of reported stress (0.85–9.9 MPa) , 1. The material behavior of the articular discs was a linear elastic model and not a non-linear material model. 2. the sample size needs to be expanded for further validation.. .. Terajima M [ ]/2008 , Case report: method description (Humans) , One subject , 1. CT + image processing software + visualization software 2. DS (VIVID format) 3. Jaw-movement analyzer 4. Image measurement software , 1. CT scanner (Aquilion, Toshiba Medical, Tokyo, Japan) + (Mimics version 7.0, CDI, Tokyo, Japan) + (Magics, CDI, Tokyo, Japan) 2. (VIVID 900, Minolta, Tokyo, Japan) 3. (TRI-MET, Tokyo-Shizaisha, Tokyo, Japan) 4. (3D-Rugle, Medic Engineering, Kyoto, Japan) , 1. Reconstruction of images integrating the CT, the 3D dental surface, ceramic spheres 2. Dental surface + ceramic spheres 3. Mandibular movement 4. Condyle position relative to the condylar fossa + contact areas during jaw movements , 1. CT +DS: fiducial markers based (ceramic balls) 2. Registration of 3D maxillofacial-dental images and that in the TRI-MET system: the least squares method , Digital dentistry Orthodontics Orthognathic surgery , Feasibility , Further studies are needed to validate its accuracy..

other:

Article Title: VprBP regulates osteoclast differentiation via an epigenetic mechanism involving histone H2A phosphorylation.
Article Snippet: Analysis of bone volume (mm3) relative to tissue volume and bone mineral density within the region of interest was conducted using 2D/3D Image analysis CT-analyzer software (Amira and Scanco).

Article Title: VprBP regulates osteoclast differentiation via an epigenetic mechanism involving histone H2A phosphorylation
Article Snippet: Analysis of bone volume (mm 3 ) relative to tissue volume and bone mineral density within the region of interest was conducted using 2D/3D Image analysis CT-analyzer software (Amira and Scanco).

Article Title: The role of Imp and Syp RNA-binding proteins in precise neuronal elimination by apoptosis through the regulation of transcription factors
Article Snippet: Software, algorithm , Amira 3D software (version 6.2) , SCR_007353 , https://www.fei.com/ , .

Microscopy:

Article Title: Rigor and reproducibility in human brain organoid research: Where we are and where we need to go
Article Snippet: .. CLARITY Hydrogel embedding Light‐Sheet microscope ImageJ or 3D imaging software(Amira, Imaris, Neurolucida, etc.) .. Shnaider and Pristyazhnyuk, 2021 CUBIC Hydrophilic reagent Light‐Sheet microscope ImageJ or 3D imaging software(Amira, Imaris, Neurolucida, etc.)

Article Title: Rigor and reproducibility in human brain organoid research: Where we are and where we need to go
Article Snippet: Shnaider and Pristyazhnyuk, 2021 CUBIC Hydrophilic reagent Light‐Sheet microscope ImageJ or 3D imaging software(Amira, Imaris, Neurolucida, etc.) .. Diosdi et al., 2021, Meng et al., 2023 Fructose‐glycerol Hydrophilic reagent Confocal, Multi‐Photon, Light‐ Sheet microscope ImageJ or 3D imaging software(Amira, Imaris, Neurolucida, etc.) .. Dekkers et al., 2019 iDISCO Organic Leica SP8 confocal ImageJ or 3D imaging software(Amira, Imaris, Neurolucida, etc.)

3D Imaging:

Article Title: Rigor and reproducibility in human brain organoid research: Where we are and where we need to go
Article Snippet: .. CLARITY Hydrogel embedding Light‐Sheet microscope ImageJ or 3D imaging software(Amira, Imaris, Neurolucida, etc.) .. Shnaider and Pristyazhnyuk, 2021 CUBIC Hydrophilic reagent Light‐Sheet microscope ImageJ or 3D imaging software(Amira, Imaris, Neurolucida, etc.)

Article Title: Rigor and reproducibility in human brain organoid research: Where we are and where we need to go
Article Snippet: Shnaider and Pristyazhnyuk, 2021 CUBIC Hydrophilic reagent Light‐Sheet microscope ImageJ or 3D imaging software(Amira, Imaris, Neurolucida, etc.) .. Diosdi et al., 2021, Meng et al., 2023 Fructose‐glycerol Hydrophilic reagent Confocal, Multi‐Photon, Light‐ Sheet microscope ImageJ or 3D imaging software(Amira, Imaris, Neurolucida, etc.) .. Dekkers et al., 2019 iDISCO Organic Leica SP8 confocal ImageJ or 3D imaging software(Amira, Imaris, Neurolucida, etc.)



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