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3d interactive microscopy visualization software  (Oxford Instruments)


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    Structured Review

    Oxford Instruments 3d interactive microscopy visualization software
    ( A ) <t>3D</t> surface projection of IHCs and OHCs from the cochlear 32 kHz region of Clic5 +/− , Clic5 −/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with a CLIC5 (red) and actin (gray). ( B ) Representative confocal images of IHCs from the apical turn of Clic5 +/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with a CLIC5 (red), actin (gray), and FLAG tag (green). ( C ) Representative confocal images of IHCs and OHCs from the cochlear 8 kHz region of Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with actin. ( D ) Stereocilia length measurements of IHC at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( E ) Quantification of OHC survival at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( F ) Quantification of IHC survival at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( G ) High-magnification scanning electron <t>microscopy</t> images of outer and inner hair bundles from the cochlea middle-turn of the Clic5 −/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks. ( H ) Representative images of IHCs and OHCs at 12 weeks at different regions of the cochlea of Clic5 −/ − injected with scAAV. Clic5 . ( I ) ABR thresholds at 4 weeks of Clic5 +/− ( n = 11), Clic5 −/− ( n = 10), and Clic5 −/− injected with scAAV. Clic5 ( n = 10). ( J ) ABR thresholds at 8 weeks of Clic5 +/− ( n = 11), Clic5 −/− ( n = 11), and Clic5 −/− injected with scAVV. Clic5 (n = 7). ( K ) ABR thresholds at 12 weeks of Clic5 +/− ( n = 10), Clic5 −/− ( n = 10), and Clic5 −/− injected with scAAV. Clic5 ( n = 7). ( L ) DPOAE thresholds at 4 weeks of Clic5 +/− ( n = 12), Clic5 −/ − ( n = 12), and Clic5 −/− injected with scAAV. Clic5 ( n = 10). ( M ) ABR thresholds at 3-time points of Clic5 −/− injected with scAAV. Clic5: 4 weeks ( n = 10), 8 weeks ( n = 7), and 12 weeks ( n = 7). ( N ) Freezing behavior duration in a fear conditioning assay at 12 weeks of Clic5 +/− ( n = 14), Clic5 − /− ( n = 14), and Clic5 −/− injected with scAAV. Clic5 ( n = 6). ( O ) Expression rates of scAAV. Clic5 across the cochlea as a function of viral titer, n = 3 for each group. ( P ) ABR thresholds at 4 weeks of Clic5 −/ − injected with scAAV .Clic5 at different viral doses: 1.52 × 10¹³ gc/ml ( n = 10), 1.52 × 10 12 gc/ml ( n = 3) and 1.52 × 10 11 gc/ml ( n = 3). Data information: Statistical tests were two-way ANOVA with Holm–Sidak correction for multiple comparisons for ( D – F , I – N , P ), and one-way ANOVA followed by Tukey correction for multiple comparisons for ( O ). Plots show mean ± SD. ns not significant, * P < 0.05, ** P < 0.01, *** P < 0.001, **** P < 0.0001 (Exact P values are provided in Appendix Table S ). Scale bars = 10 μm for ( A , C , H ), 2 μm for ( B ), 0.5 μm for OHC ( G ), and 2 μm for IHC ( G ). .
    3d Interactive Microscopy Visualization Software, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 44474 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/3d+interactive+microscopy+visualization+software/Imaris/pmc12423326-40-1-0
    Average 99 stars, based on 44474 article reviews
    3d interactive microscopy visualization software - by Bioz Stars, 2026-11
    99/100 stars

    Images

    1) Product Images from "AAV gene therapy rescues hearing and balance in a model of CLIC5 deafness"

    Article Title: AAV gene therapy rescues hearing and balance in a model of CLIC5 deafness

    Journal: EMBO Molecular Medicine

    doi: 10.1038/s44321-025-00275-7

    ( A ) 3D surface projection of IHCs and OHCs from the cochlear 32 kHz region of Clic5 +/− , Clic5 −/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with a CLIC5 (red) and actin (gray). ( B ) Representative confocal images of IHCs from the apical turn of Clic5 +/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with a CLIC5 (red), actin (gray), and FLAG tag (green). ( C ) Representative confocal images of IHCs and OHCs from the cochlear 8 kHz region of Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with actin. ( D ) Stereocilia length measurements of IHC at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( E ) Quantification of OHC survival at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( F ) Quantification of IHC survival at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( G ) High-magnification scanning electron microscopy images of outer and inner hair bundles from the cochlea middle-turn of the Clic5 −/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks. ( H ) Representative images of IHCs and OHCs at 12 weeks at different regions of the cochlea of Clic5 −/ − injected with scAAV. Clic5 . ( I ) ABR thresholds at 4 weeks of Clic5 +/− ( n = 11), Clic5 −/− ( n = 10), and Clic5 −/− injected with scAAV. Clic5 ( n = 10). ( J ) ABR thresholds at 8 weeks of Clic5 +/− ( n = 11), Clic5 −/− ( n = 11), and Clic5 −/− injected with scAVV. Clic5 (n = 7). ( K ) ABR thresholds at 12 weeks of Clic5 +/− ( n = 10), Clic5 −/− ( n = 10), and Clic5 −/− injected with scAAV. Clic5 ( n = 7). ( L ) DPOAE thresholds at 4 weeks of Clic5 +/− ( n = 12), Clic5 −/ − ( n = 12), and Clic5 −/− injected with scAAV. Clic5 ( n = 10). ( M ) ABR thresholds at 3-time points of Clic5 −/− injected with scAAV. Clic5: 4 weeks ( n = 10), 8 weeks ( n = 7), and 12 weeks ( n = 7). ( N ) Freezing behavior duration in a fear conditioning assay at 12 weeks of Clic5 +/− ( n = 14), Clic5 − /− ( n = 14), and Clic5 −/− injected with scAAV. Clic5 ( n = 6). ( O ) Expression rates of scAAV. Clic5 across the cochlea as a function of viral titer, n = 3 for each group. ( P ) ABR thresholds at 4 weeks of Clic5 −/ − injected with scAAV .Clic5 at different viral doses: 1.52 × 10¹³ gc/ml ( n = 10), 1.52 × 10 12 gc/ml ( n = 3) and 1.52 × 10 11 gc/ml ( n = 3). Data information: Statistical tests were two-way ANOVA with Holm–Sidak correction for multiple comparisons for ( D – F , I – N , P ), and one-way ANOVA followed by Tukey correction for multiple comparisons for ( O ). Plots show mean ± SD. ns not significant, * P < 0.05, ** P < 0.01, *** P < 0.001, **** P < 0.0001 (Exact P values are provided in Appendix Table S ). Scale bars = 10 μm for ( A , C , H ), 2 μm for ( B ), 0.5 μm for OHC ( G ), and 2 μm for IHC ( G ). .
    Figure Legend Snippet: ( A ) 3D surface projection of IHCs and OHCs from the cochlear 32 kHz region of Clic5 +/− , Clic5 −/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with a CLIC5 (red) and actin (gray). ( B ) Representative confocal images of IHCs from the apical turn of Clic5 +/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with a CLIC5 (red), actin (gray), and FLAG tag (green). ( C ) Representative confocal images of IHCs and OHCs from the cochlear 8 kHz region of Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with actin. ( D ) Stereocilia length measurements of IHC at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( E ) Quantification of OHC survival at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( F ) Quantification of IHC survival at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( G ) High-magnification scanning electron microscopy images of outer and inner hair bundles from the cochlea middle-turn of the Clic5 −/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks. ( H ) Representative images of IHCs and OHCs at 12 weeks at different regions of the cochlea of Clic5 −/ − injected with scAAV. Clic5 . ( I ) ABR thresholds at 4 weeks of Clic5 +/− ( n = 11), Clic5 −/− ( n = 10), and Clic5 −/− injected with scAAV. Clic5 ( n = 10). ( J ) ABR thresholds at 8 weeks of Clic5 +/− ( n = 11), Clic5 −/− ( n = 11), and Clic5 −/− injected with scAVV. Clic5 (n = 7). ( K ) ABR thresholds at 12 weeks of Clic5 +/− ( n = 10), Clic5 −/− ( n = 10), and Clic5 −/− injected with scAAV. Clic5 ( n = 7). ( L ) DPOAE thresholds at 4 weeks of Clic5 +/− ( n = 12), Clic5 −/ − ( n = 12), and Clic5 −/− injected with scAAV. Clic5 ( n = 10). ( M ) ABR thresholds at 3-time points of Clic5 −/− injected with scAAV. Clic5: 4 weeks ( n = 10), 8 weeks ( n = 7), and 12 weeks ( n = 7). ( N ) Freezing behavior duration in a fear conditioning assay at 12 weeks of Clic5 +/− ( n = 14), Clic5 − /− ( n = 14), and Clic5 −/− injected with scAAV. Clic5 ( n = 6). ( O ) Expression rates of scAAV. Clic5 across the cochlea as a function of viral titer, n = 3 for each group. ( P ) ABR thresholds at 4 weeks of Clic5 −/ − injected with scAAV .Clic5 at different viral doses: 1.52 × 10¹³ gc/ml ( n = 10), 1.52 × 10 12 gc/ml ( n = 3) and 1.52 × 10 11 gc/ml ( n = 3). Data information: Statistical tests were two-way ANOVA with Holm–Sidak correction for multiple comparisons for ( D – F , I – N , P ), and one-way ANOVA followed by Tukey correction for multiple comparisons for ( O ). Plots show mean ± SD. ns not significant, * P < 0.05, ** P < 0.01, *** P < 0.001, **** P < 0.0001 (Exact P values are provided in Appendix Table S ). Scale bars = 10 μm for ( A , C , H ), 2 μm for ( B ), 0.5 μm for OHC ( G ), and 2 μm for IHC ( G ). .

    Techniques Used: Injection, Staining, FLAG-tag, Electron Microscopy, Expressing

    Related Articles

    Analysis:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Generated:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Morphology:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Software:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Z-Stacks:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Fluorescence Microscopy:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Fluorescence:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Microscopy:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Western Blot:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Incubation:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Drosophila:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Confocal:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Blocking Assay:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Imaging:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Cytometry:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Flow Cytometry:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Structured Illumination Microscopy:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Micro-CT:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Quantitative RT-PCR:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Gene Expression:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Expressing:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Confocal Laser Scanning Microscopy:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Next-Generation Sequencing:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Mouse Assay:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide

    Laser-Scanning Microscopy:

    Article Title: Red Fluorescent Labeling of Myelin by Membrane-Targeted tdTomato in Transgenic Mouse Lines.
    Article Snippet: adjusted for brightness and contrast with Fiji. For 3D reconstruction and morphological analysis of oligodendrocytes in line CNPMTO- C, z- stacks were acquired at 0.5 μm intervals and processed using Imaris (version 10.2) for 3D reconstruction (Surface mode) and myelin sheath measurements (Filament mode). Optic and sciatic nerves were whole- mounted (Fluoromount- G, Invitrogen) on SuperFrost slide



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    ( A ) <t>3D</t> surface projection of IHCs and OHCs from the cochlear 32 kHz region of Clic5 +/− , Clic5 −/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with a CLIC5 (red) and actin (gray). ( B ) Representative confocal images of IHCs from the apical turn of Clic5 +/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with a CLIC5 (red), actin (gray), and FLAG tag (green). ( C ) Representative confocal images of IHCs and OHCs from the cochlear 8 kHz region of Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with actin. ( D ) Stereocilia length measurements of IHC at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( E ) Quantification of OHC survival at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( F ) Quantification of IHC survival at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( G ) High-magnification scanning electron <t>microscopy</t> images of outer and inner hair bundles from the cochlea middle-turn of the Clic5 −/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks. ( H ) Representative images of IHCs and OHCs at 12 weeks at different regions of the cochlea of Clic5 −/ − injected with scAAV. Clic5 . ( I ) ABR thresholds at 4 weeks of Clic5 +/− ( n = 11), Clic5 −/− ( n = 10), and Clic5 −/− injected with scAAV. Clic5 ( n = 10). ( J ) ABR thresholds at 8 weeks of Clic5 +/− ( n = 11), Clic5 −/− ( n = 11), and Clic5 −/− injected with scAVV. Clic5 (n = 7). ( K ) ABR thresholds at 12 weeks of Clic5 +/− ( n = 10), Clic5 −/− ( n = 10), and Clic5 −/− injected with scAAV. Clic5 ( n = 7). ( L ) DPOAE thresholds at 4 weeks of Clic5 +/− ( n = 12), Clic5 −/ − ( n = 12), and Clic5 −/− injected with scAAV. Clic5 ( n = 10). ( M ) ABR thresholds at 3-time points of Clic5 −/− injected with scAAV. Clic5: 4 weeks ( n = 10), 8 weeks ( n = 7), and 12 weeks ( n = 7). ( N ) Freezing behavior duration in a fear conditioning assay at 12 weeks of Clic5 +/− ( n = 14), Clic5 − /− ( n = 14), and Clic5 −/− injected with scAAV. Clic5 ( n = 6). ( O ) Expression rates of scAAV. Clic5 across the cochlea as a function of viral titer, n = 3 for each group. ( P ) ABR thresholds at 4 weeks of Clic5 −/ − injected with scAAV .Clic5 at different viral doses: 1.52 × 10¹³ gc/ml ( n = 10), 1.52 × 10 12 gc/ml ( n = 3) and 1.52 × 10 11 gc/ml ( n = 3). Data information: Statistical tests were two-way ANOVA with Holm–Sidak correction for multiple comparisons for ( D – F , I – N , P ), and one-way ANOVA followed by Tukey correction for multiple comparisons for ( O ). Plots show mean ± SD. ns not significant, * P < 0.05, ** P < 0.01, *** P < 0.001, **** P < 0.0001 (Exact P values are provided in Appendix Table S ). Scale bars = 10 μm for ( A , C , H ), 2 μm for ( B ), 0.5 μm for OHC ( G ), and 2 μm for IHC ( G ). .
    3d Interactive Microscopy Visualization Software, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ( A ) 3D surface projection of IHCs and OHCs from the cochlear 32 kHz region of Clic5 +/− , Clic5 −/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with a CLIC5 (red) and actin (gray). ( B ) Representative confocal images of IHCs from the apical turn of Clic5 +/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with a CLIC5 (red), actin (gray), and FLAG tag (green). ( C ) Representative confocal images of IHCs and OHCs from the cochlear 8 kHz region of Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with actin. ( D ) Stereocilia length measurements of IHC at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( E ) Quantification of OHC survival at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( F ) Quantification of IHC survival at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( G ) High-magnification scanning electron microscopy images of outer and inner hair bundles from the cochlea middle-turn of the Clic5 −/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks. ( H ) Representative images of IHCs and OHCs at 12 weeks at different regions of the cochlea of Clic5 −/ − injected with scAAV. Clic5 . ( I ) ABR thresholds at 4 weeks of Clic5 +/− ( n = 11), Clic5 −/− ( n = 10), and Clic5 −/− injected with scAAV. Clic5 ( n = 10). ( J ) ABR thresholds at 8 weeks of Clic5 +/− ( n = 11), Clic5 −/− ( n = 11), and Clic5 −/− injected with scAVV. Clic5 (n = 7). ( K ) ABR thresholds at 12 weeks of Clic5 +/− ( n = 10), Clic5 −/− ( n = 10), and Clic5 −/− injected with scAAV. Clic5 ( n = 7). ( L ) DPOAE thresholds at 4 weeks of Clic5 +/− ( n = 12), Clic5 −/ − ( n = 12), and Clic5 −/− injected with scAAV. Clic5 ( n = 10). ( M ) ABR thresholds at 3-time points of Clic5 −/− injected with scAAV. Clic5: 4 weeks ( n = 10), 8 weeks ( n = 7), and 12 weeks ( n = 7). ( N ) Freezing behavior duration in a fear conditioning assay at 12 weeks of Clic5 +/− ( n = 14), Clic5 − /− ( n = 14), and Clic5 −/− injected with scAAV. Clic5 ( n = 6). ( O ) Expression rates of scAAV. Clic5 across the cochlea as a function of viral titer, n = 3 for each group. ( P ) ABR thresholds at 4 weeks of Clic5 −/ − injected with scAAV .Clic5 at different viral doses: 1.52 × 10¹³ gc/ml ( n = 10), 1.52 × 10 12 gc/ml ( n = 3) and 1.52 × 10 11 gc/ml ( n = 3). Data information: Statistical tests were two-way ANOVA with Holm–Sidak correction for multiple comparisons for ( D – F , I – N , P ), and one-way ANOVA followed by Tukey correction for multiple comparisons for ( O ). Plots show mean ± SD. ns not significant, * P < 0.05, ** P < 0.01, *** P < 0.001, **** P < 0.0001 (Exact P values are provided in Appendix Table S ). Scale bars = 10 μm for ( A , C , H ), 2 μm for ( B ), 0.5 μm for OHC ( G ), and 2 μm for IHC ( G ). .

    Journal: EMBO Molecular Medicine

    Article Title: AAV gene therapy rescues hearing and balance in a model of CLIC5 deafness

    doi: 10.1038/s44321-025-00275-7

    Figure Lengend Snippet: ( A ) 3D surface projection of IHCs and OHCs from the cochlear 32 kHz region of Clic5 +/− , Clic5 −/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with a CLIC5 (red) and actin (gray). ( B ) Representative confocal images of IHCs from the apical turn of Clic5 +/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with a CLIC5 (red), actin (gray), and FLAG tag (green). ( C ) Representative confocal images of IHCs and OHCs from the cochlear 8 kHz region of Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 at 12 weeks, stained with actin. ( D ) Stereocilia length measurements of IHC at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( E ) Quantification of OHC survival at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( F ) Quantification of IHC survival at different regions of the cochlea, n = 3 for Clic5 +/− , Clic5 −/− , and Clic5 −/− injected with scAAV. Clic5 . ( G ) High-magnification scanning electron microscopy images of outer and inner hair bundles from the cochlea middle-turn of the Clic5 −/− and Clic5 −/− injected with scAAV. Clic5 at 12 weeks. ( H ) Representative images of IHCs and OHCs at 12 weeks at different regions of the cochlea of Clic5 −/ − injected with scAAV. Clic5 . ( I ) ABR thresholds at 4 weeks of Clic5 +/− ( n = 11), Clic5 −/− ( n = 10), and Clic5 −/− injected with scAAV. Clic5 ( n = 10). ( J ) ABR thresholds at 8 weeks of Clic5 +/− ( n = 11), Clic5 −/− ( n = 11), and Clic5 −/− injected with scAVV. Clic5 (n = 7). ( K ) ABR thresholds at 12 weeks of Clic5 +/− ( n = 10), Clic5 −/− ( n = 10), and Clic5 −/− injected with scAAV. Clic5 ( n = 7). ( L ) DPOAE thresholds at 4 weeks of Clic5 +/− ( n = 12), Clic5 −/ − ( n = 12), and Clic5 −/− injected with scAAV. Clic5 ( n = 10). ( M ) ABR thresholds at 3-time points of Clic5 −/− injected with scAAV. Clic5: 4 weeks ( n = 10), 8 weeks ( n = 7), and 12 weeks ( n = 7). ( N ) Freezing behavior duration in a fear conditioning assay at 12 weeks of Clic5 +/− ( n = 14), Clic5 − /− ( n = 14), and Clic5 −/− injected with scAAV. Clic5 ( n = 6). ( O ) Expression rates of scAAV. Clic5 across the cochlea as a function of viral titer, n = 3 for each group. ( P ) ABR thresholds at 4 weeks of Clic5 −/ − injected with scAAV .Clic5 at different viral doses: 1.52 × 10¹³ gc/ml ( n = 10), 1.52 × 10 12 gc/ml ( n = 3) and 1.52 × 10 11 gc/ml ( n = 3). Data information: Statistical tests were two-way ANOVA with Holm–Sidak correction for multiple comparisons for ( D – F , I – N , P ), and one-way ANOVA followed by Tukey correction for multiple comparisons for ( O ). Plots show mean ± SD. ns not significant, * P < 0.05, ** P < 0.01, *** P < 0.001, **** P < 0.0001 (Exact P values are provided in Appendix Table S ). Scale bars = 10 μm for ( A , C , H ), 2 μm for ( B ), 0.5 μm for OHC ( G ), and 2 μm for IHC ( G ). .

    Article Snippet: Imaris 3D Interactive Microscopy Visualization software , Oxford Instruments . , version 10.1.

    Techniques: Injection, Staining, FLAG-tag, Electron Microscopy, Expressing