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axioscan zeiss  (Carl Zeiss)


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    Structured Review

    Carl Zeiss axioscan zeiss
    Axioscan Zeiss, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/3d+image+processing+software+scanip/axioscan/pm34537470-58-15-17
    Average 90 stars, based on 1 article reviews
    axioscan zeiss - by Bioz Stars, 2026-11
    90/100 stars

    Images

    Related Articles

    other:

    Article Title: Wnt Signaling in Male Genital Lichen Sclerosus, Differentiated Penile Intraepithelial Neoplasia, and Penile Squamous Cell Carcinoma
    Article Snippet: Colour rendered in Zeiss AxioScan , Blue , Yellow , Red , Pink.

    Article Title: Targeted epicardial pulsed field ablation of atrial ganglionated plexi: Electrophysiological and histological analysis in pigs.
    Article Snippet: The stained sections were scanned using AxioScan 55 7 (Zeiss, Oberkochen, Germany) at 20× magnification, and representative H&E images with 56 40× magnification.

    Imaging:

    Article Title: OpenDVP: An experimental and computational framework for community-empowered deep visual proteomics
    Article Snippet: .. Imaging was performed using Zeiss Axioscan 7. ..

    Software:

    Article Title: Anlotinib combined with benmelstobart as a chemo-free first-line treatment in advanced esophageal squamous cell carcinoma: an exploratory multicenter, single-arm phase II clinical trial.
    Article Snippet: .. Images were scanned with ZEISS AXIOSCAN 7 (ZEISS, Oberkochen, Germany) and analyzed with HALO software (v3.6; Indica Labs, USA). ..

    Article Title:
    Article Snippet: .. Software and code Policy information about availability of computer code Data collection Zeiss LSM 880 Zeiss black software Leica software (LAS X) Confocal laser scanning microscope (TCS SP8; Leica) Olympus ScanR Image Acquisition Software ImageQuant LAS 4000 for western blot AriaMx Real-Time PCR instrument (G8830A) for qPCRs Illumina Hiseq 4000 sequencer for ChIP-seq Comet Assay IV software (Perceptive Instruments, UK) Data analysis ImageJ/Fiji software (version 2.1.0/1.53c) Prism (version 8.4.2, GraphPad) Olympus ScanR Image Analysis Software (Version 3.0.1) Spotfire software (version 7.0.1; TIBCO 7.11) Comet Assay IV software (Perceptive Instruments, UK) Agilent AriaMx software (version 1.71) DESEQ2 for statistical analysis Bowtie2, MACS2, HOMER, deepTools For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors and reviewers. ..

    Staining:

    Article Title: Urolithin A-laden functional nanoparticles alleviate cisplatin-induced cardiotoxicity in mice by inhibiting inflammation-induced lymphangiogenesis.
    Article Snippet: Following primary antibody incubation, the sections were treated with secondary antibodies: goat anti-mouse IgG Alexa Fluor-555 (catalog #A21425)/goat anti-rabbit IgG Alexa Fluor-488 (catalog #A-11070) at a 1:1000 dilution for 2 h. After incubation with secondary antibodies, the samples were washed three times with PBS and mounted using Vectashield with DAPI (catalog #H-2000-10, Vector Laboratories) for nuclear staining. .. The stained slides were visualized using a confocal microscope (LSM-900, Zeiss) or an Axioscan 7 (Zeiss). .. Images were obtained and processed using Zen Blue 3.3 software and quantified using ImageJ (NIH) or AngioTool64 software.

    Microscopy:

    Article Title: Urolithin A-laden functional nanoparticles alleviate cisplatin-induced cardiotoxicity in mice by inhibiting inflammation-induced lymphangiogenesis.
    Article Snippet: Following primary antibody incubation, the sections were treated with secondary antibodies: goat anti-mouse IgG Alexa Fluor-555 (catalog #A21425)/goat anti-rabbit IgG Alexa Fluor-488 (catalog #A-11070) at a 1:1000 dilution for 2 h. After incubation with secondary antibodies, the samples were washed three times with PBS and mounted using Vectashield with DAPI (catalog #H-2000-10, Vector Laboratories) for nuclear staining. .. The stained slides were visualized using a confocal microscope (LSM-900, Zeiss) or an Axioscan 7 (Zeiss). .. Images were obtained and processed using Zen Blue 3.3 software and quantified using ImageJ (NIH) or AngioTool64 software.

    Article Title: The Integrated Stress Response Pathway Coordinates Translational Control of Multiple Immune Checkpoints in Lung Cancer
    Article Snippet: Finally, slides were counterstained with 4′,6-diamidino-2-phenylindole (DAPI), and coverslips were mounted (ProLong Diamond, Invitrogen, P36961 ) and cured overnight before imaging. .. Slides were scanned at the UTSW Whole Brain Microscopy Facility on a Zeiss Axioscan 7. .. Finally, slides were counterstained with 4′,6-diamidino-2-phenylindole (DAPI), and coverslips were mounted (ProLong Diamond, Invitrogen, P36961 ) and cured overnight before imaging.

    Laser-Scanning Microscopy:

    Article Title:
    Article Snippet: .. Software and code Policy information about availability of computer code Data collection Zeiss LSM 880 Zeiss black software Leica software (LAS X) Confocal laser scanning microscope (TCS SP8; Leica) Olympus ScanR Image Acquisition Software ImageQuant LAS 4000 for western blot AriaMx Real-Time PCR instrument (G8830A) for qPCRs Illumina Hiseq 4000 sequencer for ChIP-seq Comet Assay IV software (Perceptive Instruments, UK) Data analysis ImageJ/Fiji software (version 2.1.0/1.53c) Prism (version 8.4.2, GraphPad) Olympus ScanR Image Analysis Software (Version 3.0.1) Spotfire software (version 7.0.1; TIBCO 7.11) Comet Assay IV software (Perceptive Instruments, UK) Agilent AriaMx software (version 1.71) DESEQ2 for statistical analysis Bowtie2, MACS2, HOMER, deepTools For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors and reviewers. ..

    Western Blot:

    Article Title:
    Article Snippet: .. Software and code Policy information about availability of computer code Data collection Zeiss LSM 880 Zeiss black software Leica software (LAS X) Confocal laser scanning microscope (TCS SP8; Leica) Olympus ScanR Image Acquisition Software ImageQuant LAS 4000 for western blot AriaMx Real-Time PCR instrument (G8830A) for qPCRs Illumina Hiseq 4000 sequencer for ChIP-seq Comet Assay IV software (Perceptive Instruments, UK) Data analysis ImageJ/Fiji software (version 2.1.0/1.53c) Prism (version 8.4.2, GraphPad) Olympus ScanR Image Analysis Software (Version 3.0.1) Spotfire software (version 7.0.1; TIBCO 7.11) Comet Assay IV software (Perceptive Instruments, UK) Agilent AriaMx software (version 1.71) DESEQ2 for statistical analysis Bowtie2, MACS2, HOMER, deepTools For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors and reviewers. ..

    Real-time Polymerase Chain Reaction:

    Article Title:
    Article Snippet: .. Software and code Policy information about availability of computer code Data collection Zeiss LSM 880 Zeiss black software Leica software (LAS X) Confocal laser scanning microscope (TCS SP8; Leica) Olympus ScanR Image Acquisition Software ImageQuant LAS 4000 for western blot AriaMx Real-Time PCR instrument (G8830A) for qPCRs Illumina Hiseq 4000 sequencer for ChIP-seq Comet Assay IV software (Perceptive Instruments, UK) Data analysis ImageJ/Fiji software (version 2.1.0/1.53c) Prism (version 8.4.2, GraphPad) Olympus ScanR Image Analysis Software (Version 3.0.1) Spotfire software (version 7.0.1; TIBCO 7.11) Comet Assay IV software (Perceptive Instruments, UK) Agilent AriaMx software (version 1.71) DESEQ2 for statistical analysis Bowtie2, MACS2, HOMER, deepTools For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors and reviewers. ..

    Chromatin Immunoprecipitation:

    Article Title:
    Article Snippet: .. Software and code Policy information about availability of computer code Data collection Zeiss LSM 880 Zeiss black software Leica software (LAS X) Confocal laser scanning microscope (TCS SP8; Leica) Olympus ScanR Image Acquisition Software ImageQuant LAS 4000 for western blot AriaMx Real-Time PCR instrument (G8830A) for qPCRs Illumina Hiseq 4000 sequencer for ChIP-seq Comet Assay IV software (Perceptive Instruments, UK) Data analysis ImageJ/Fiji software (version 2.1.0/1.53c) Prism (version 8.4.2, GraphPad) Olympus ScanR Image Analysis Software (Version 3.0.1) Spotfire software (version 7.0.1; TIBCO 7.11) Comet Assay IV software (Perceptive Instruments, UK) Agilent AriaMx software (version 1.71) DESEQ2 for statistical analysis Bowtie2, MACS2, HOMER, deepTools For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors and reviewers. ..

    Single Cell Gel Electrophoresis:

    Article Title:
    Article Snippet: .. Software and code Policy information about availability of computer code Data collection Zeiss LSM 880 Zeiss black software Leica software (LAS X) Confocal laser scanning microscope (TCS SP8; Leica) Olympus ScanR Image Acquisition Software ImageQuant LAS 4000 for western blot AriaMx Real-Time PCR instrument (G8830A) for qPCRs Illumina Hiseq 4000 sequencer for ChIP-seq Comet Assay IV software (Perceptive Instruments, UK) Data analysis ImageJ/Fiji software (version 2.1.0/1.53c) Prism (version 8.4.2, GraphPad) Olympus ScanR Image Analysis Software (Version 3.0.1) Spotfire software (version 7.0.1; TIBCO 7.11) Comet Assay IV software (Perceptive Instruments, UK) Agilent AriaMx software (version 1.71) DESEQ2 for statistical analysis Bowtie2, MACS2, HOMER, deepTools For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors and reviewers. ..



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    The process for generation of a <t>3D</t> model. A: Computed tomographic images of the nasal passages were acquired in <t>a</t> <t>transverse</t> image plane using multi-detector computed tomography. A representative image of the caudal nasal passage at the level of the choanae is shown. B: Threshold segmentation in the ScanIP program isolated the airways (blue) using a threshold of −1024 to −450 Hounsfield units (HU). C: A fill threshold algorithm in ScanIP was used to generate a solid model of the nasal passages which was then sub-divided into 6-sided tetrahedral elements and exported to the COMOSL Multiphysics software package. D: 3D model of the nasal passages within the COMSOL Multiphysics package with E: Zoomed in image of the 3D model and tetrahedral mesh elements used in the computational fluid dynamic analysis. Note that each tetrahedral element has 6 sides or edges and the minimum edge length controls the mesh density where a smaller minimum edge length leads to a more dense mesh and more elements.
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    Simpleware Ltd 3d image processing and model generation software package scanip (version 5.3)
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    Image Search Results


    The process for generation of a 3D model. A: Computed tomographic images of the nasal passages were acquired in a transverse image plane using multi-detector computed tomography. A representative image of the caudal nasal passage at the level of the choanae is shown. B: Threshold segmentation in the ScanIP program isolated the airways (blue) using a threshold of −1024 to −450 Hounsfield units (HU). C: A fill threshold algorithm in ScanIP was used to generate a solid model of the nasal passages which was then sub-divided into 6-sided tetrahedral elements and exported to the COMOSL Multiphysics software package. D: 3D model of the nasal passages within the COMSOL Multiphysics package with E: Zoomed in image of the 3D model and tetrahedral mesh elements used in the computational fluid dynamic analysis. Note that each tetrahedral element has 6 sides or edges and the minimum edge length controls the mesh density where a smaller minimum edge length leads to a more dense mesh and more elements.

    Journal: Veterinary radiology & ultrasound : the official journal of the American College of Veterinary Radiology and the International Veterinary Radiology Association

    Article Title: Quantification of Nasal Airflow Resistance In English Bulldogs Using Computed Tomography and Computational Fluid Dynamics

    doi: 10.1111/vru.12531

    Figure Lengend Snippet: The process for generation of a 3D model. A: Computed tomographic images of the nasal passages were acquired in a transverse image plane using multi-detector computed tomography. A representative image of the caudal nasal passage at the level of the choanae is shown. B: Threshold segmentation in the ScanIP program isolated the airways (blue) using a threshold of −1024 to −450 Hounsfield units (HU). C: A fill threshold algorithm in ScanIP was used to generate a solid model of the nasal passages which was then sub-divided into 6-sided tetrahedral elements and exported to the COMOSL Multiphysics software package. D: 3D model of the nasal passages within the COMSOL Multiphysics package with E: Zoomed in image of the 3D model and tetrahedral mesh elements used in the computational fluid dynamic analysis. Note that each tetrahedral element has 6 sides or edges and the minimum edge length controls the mesh density where a smaller minimum edge length leads to a more dense mesh and more elements.

    Article Snippet: First, the raw MDCT bone algorithm transverse dataset was imported into a three-dimensional (3D) image processing and model generation software program (ScanIP, Synopsys, Inc. Simpleware, Version 7.0, Chantilly, VA).

    Techniques: Computed Tomography, Isolation, Software

    Asymmetry of pressure between the right and left nasal passages was identified in two dogs. A: Rostrocaudal orientation; smoothed 3D model of the airway showing the right nasal cavity having a higher pressure compared to the left nasal passage. The yellow color depicts a higher pressure relative to the blue color-coded left nasal cavity. B: Ventrodorsal orientation; smoothed 3D model airway shows the differing pressures within the rostral nasal passages. The rostral nares are at the top of the image. C: Transverse CT image of a nasal cavity with asymmetry between the nasal cavities. Dog is in ventral (V) recumbency, the right side (R) of the dog is to the left of the image. Bone algorithm. Window width: 2500 Window level: 250.

    Journal: Veterinary radiology & ultrasound : the official journal of the American College of Veterinary Radiology and the International Veterinary Radiology Association

    Article Title: Quantification of Nasal Airflow Resistance In English Bulldogs Using Computed Tomography and Computational Fluid Dynamics

    doi: 10.1111/vru.12531

    Figure Lengend Snippet: Asymmetry of pressure between the right and left nasal passages was identified in two dogs. A: Rostrocaudal orientation; smoothed 3D model of the airway showing the right nasal cavity having a higher pressure compared to the left nasal passage. The yellow color depicts a higher pressure relative to the blue color-coded left nasal cavity. B: Ventrodorsal orientation; smoothed 3D model airway shows the differing pressures within the rostral nasal passages. The rostral nares are at the top of the image. C: Transverse CT image of a nasal cavity with asymmetry between the nasal cavities. Dog is in ventral (V) recumbency, the right side (R) of the dog is to the left of the image. Bone algorithm. Window width: 2500 Window level: 250.

    Article Snippet: First, the raw MDCT bone algorithm transverse dataset was imported into a three-dimensional (3D) image processing and model generation software program (ScanIP, Synopsys, Inc. Simpleware, Version 7.0, Chantilly, VA).

    Techniques: