chip-seq analysis Search Results


chip-seq analyses  (Active Motif)
90
Active Motif chip-seq analyses
Chip Seq Analyses, supplied by Active Motif, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/chip-seq+analysis/pmc06397674-88-2-5?v=Active+Motif
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chip-seq analyses - by Bioz Stars, 2026-07
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chip-seq analyses  (Hirotsu Bio Science Inc)
90
Hirotsu Bio Science Inc chip-seq analyses
Chip Seq Analyses, supplied by Hirotsu Bio Science Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/chip-seq+analysis/pmc04911266-106-0-27?v=Hirotsu+Bio+Science+Inc
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chip-seq analyses - by Bioz Stars, 2026-07
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chip-seq analysis workflow  (CLC Bio)
90
CLC Bio chip-seq analysis workflow
Chip Seq Analysis Workflow, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/chip-seq+analysis/pmc09654037-180-1-5?v=CLC+Bio
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chip-seq analysis workflow - by Bioz Stars, 2026-07
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chip-seq analysis  (Genotypic Technology Pvt Ltd)
90
Genotypic Technology Pvt Ltd chip-seq analysis
Chip Seq Analysis, supplied by Genotypic Technology Pvt Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/chip-seq+analysis/pmc03990503-523-1-6?v=Genotypic+Technology+Pvt+Ltd
Average 90 stars, based on 1 article reviews
chip-seq analysis - by Bioz Stars, 2026-07
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hnf-4α antibodies  (Active Motif)
90
Active Motif hnf-4α antibodies
Fig. 4.
Hnf 4α Antibodies, supplied by Active Motif, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/chip-seq+analysis/pmc01805562-190-1-6?v=Active+Motif
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hnf-4α antibodies - by Bioz Stars, 2026-07
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chip seq analysis  (Arraystar inc)
90
Arraystar inc chip seq analysis
Chromatin immunoprecipitation <t>(ChIP)</t> analysis of transcriptomic and <t>genome-wide</t> <t>SMYD3</t> binding profiles in MB. ( A ) Heat map showing the distribution and peak intensity of SMYD3 genomic occupancy from 5 kb downstream to 5 kb upstream. ( B ) Schematic representation of peaks into promoter peaks, upstream peaks, intron peaks, exon peaks, and intergenic peaks; pie diagram showing the distribution of peaks. ( C ) Graph depicting the ChIP peak at the global TSS (green) vs. Input peak (orange). ( D ) Pathway analysis using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database showing SMYD3 enrichment scores. ( E ) List of genes and their representative pathways whose promoters were bound by SMYD3, as predicted by KEGG pathway analysis.
Chip Seq Analysis, supplied by Arraystar inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/chip-seq+analysis/pmc08997160-54-8-11?v=Arraystar+inc
Average 90 stars, based on 1 article reviews
chip seq analysis - by Bioz Stars, 2026-07
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model-based analysis of chip-seq (macs)  (Active Motif)
90
Active Motif model-based analysis of chip-seq (macs)
Chromatin immunoprecipitation <t>(ChIP)</t> analysis of transcriptomic and <t>genome-wide</t> <t>SMYD3</t> binding profiles in MB. ( A ) Heat map showing the distribution and peak intensity of SMYD3 genomic occupancy from 5 kb downstream to 5 kb upstream. ( B ) Schematic representation of peaks into promoter peaks, upstream peaks, intron peaks, exon peaks, and intergenic peaks; pie diagram showing the distribution of peaks. ( C ) Graph depicting the ChIP peak at the global TSS (green) vs. Input peak (orange). ( D ) Pathway analysis using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database showing SMYD3 enrichment scores. ( E ) List of genes and their representative pathways whose promoters were bound by SMYD3, as predicted by KEGG pathway analysis.
Model Based Analysis Of Chip Seq (Macs), supplied by Active Motif, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/chip-seq+analysis/pmc06225975-139-10-17?v=Active+Motif
Average 90 stars, based on 1 article reviews
model-based analysis of chip-seq (macs) - by Bioz Stars, 2026-07
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model-based analysis of chipseq (macs)  (Arraystar inc)
90
Arraystar inc model-based analysis of chipseq (macs)
Chromatin immunoprecipitation <t>(ChIP)</t> analysis of transcriptomic and <t>genome-wide</t> <t>SMYD3</t> binding profiles in MB. ( A ) Heat map showing the distribution and peak intensity of SMYD3 genomic occupancy from 5 kb downstream to 5 kb upstream. ( B ) Schematic representation of peaks into promoter peaks, upstream peaks, intron peaks, exon peaks, and intergenic peaks; pie diagram showing the distribution of peaks. ( C ) Graph depicting the ChIP peak at the global TSS (green) vs. Input peak (orange). ( D ) Pathway analysis using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database showing SMYD3 enrichment scores. ( E ) List of genes and their representative pathways whose promoters were bound by SMYD3, as predicted by KEGG pathway analysis.
Model Based Analysis Of Chipseq (Macs), supplied by Arraystar inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/chip-seq+analysis/10__1128_slash_iai__05422___11-75-9-13?v=Arraystar+inc
Average 90 stars, based on 1 article reviews
model-based analysis of chipseq (macs) - by Bioz Stars, 2026-07
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chromatin immunoprecipitation-sequencing (chip-seq)  (CEM Corporation)
90
CEM Corporation chromatin immunoprecipitation-sequencing (chip-seq)
Chromatin immunoprecipitation <t>(ChIP)</t> analysis of transcriptomic and <t>genome-wide</t> <t>SMYD3</t> binding profiles in MB. ( A ) Heat map showing the distribution and peak intensity of SMYD3 genomic occupancy from 5 kb downstream to 5 kb upstream. ( B ) Schematic representation of peaks into promoter peaks, upstream peaks, intron peaks, exon peaks, and intergenic peaks; pie diagram showing the distribution of peaks. ( C ) Graph depicting the ChIP peak at the global TSS (green) vs. Input peak (orange). ( D ) Pathway analysis using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database showing SMYD3 enrichment scores. ( E ) List of genes and their representative pathways whose promoters were bound by SMYD3, as predicted by KEGG pathway analysis.
Chromatin Immunoprecipitation Sequencing (Chip Seq), supplied by CEM Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/chip-seq+analysis/pm30404791-164-19-37?v=CEM+Corporation
Average 90 stars, based on 1 article reviews
chromatin immunoprecipitation-sequencing (chip-seq) - by Bioz Stars, 2026-07
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chip-seq analysis  (Kliewe GmbH)
90
Kliewe GmbH chip-seq analysis
Chromatin immunoprecipitation <t>(ChIP)</t> analysis of transcriptomic and <t>genome-wide</t> <t>SMYD3</t> binding profiles in MB. ( A ) Heat map showing the distribution and peak intensity of SMYD3 genomic occupancy from 5 kb downstream to 5 kb upstream. ( B ) Schematic representation of peaks into promoter peaks, upstream peaks, intron peaks, exon peaks, and intergenic peaks; pie diagram showing the distribution of peaks. ( C ) Graph depicting the ChIP peak at the global TSS (green) vs. Input peak (orange). ( D ) Pathway analysis using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database showing SMYD3 enrichment scores. ( E ) List of genes and their representative pathways whose promoters were bound by SMYD3, as predicted by KEGG pathway analysis.
Chip Seq Analysis, supplied by Kliewe GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/chip-seq+analysis/pm34148307-286-25-1?v=Kliewe+GmbH
Average 90 stars, based on 1 article reviews
chip-seq analysis - by Bioz Stars, 2026-07
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antibodies dedicated chip-seq analysis  (Merck KGaA)
90
Merck KGaA antibodies dedicated chip-seq analysis
Chromatin immunoprecipitation <t>(ChIP)</t> analysis of transcriptomic and <t>genome-wide</t> <t>SMYD3</t> binding profiles in MB. ( A ) Heat map showing the distribution and peak intensity of SMYD3 genomic occupancy from 5 kb downstream to 5 kb upstream. ( B ) Schematic representation of peaks into promoter peaks, upstream peaks, intron peaks, exon peaks, and intergenic peaks; pie diagram showing the distribution of peaks. ( C ) Graph depicting the ChIP peak at the global TSS (green) vs. Input peak (orange). ( D ) Pathway analysis using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database showing SMYD3 enrichment scores. ( E ) List of genes and their representative pathways whose promoters were bound by SMYD3, as predicted by KEGG pathway analysis.
Antibodies Dedicated Chip Seq Analysis, supplied by Merck KGaA, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/chip-seq+analysis/pm38745328-109-4-9?v=Merck+KGaA
Average 90 stars, based on 1 article reviews
antibodies dedicated chip-seq analysis - by Bioz Stars, 2026-07
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chip-seq analysis  (WholeGenome LLC)
90
WholeGenome LLC chip-seq analysis
Chromatin immunoprecipitation <t>(ChIP)</t> analysis of transcriptomic and <t>genome-wide</t> <t>SMYD3</t> binding profiles in MB. ( A ) Heat map showing the distribution and peak intensity of SMYD3 genomic occupancy from 5 kb downstream to 5 kb upstream. ( B ) Schematic representation of peaks into promoter peaks, upstream peaks, intron peaks, exon peaks, and intergenic peaks; pie diagram showing the distribution of peaks. ( C ) Graph depicting the ChIP peak at the global TSS (green) vs. Input peak (orange). ( D ) Pathway analysis using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database showing SMYD3 enrichment scores. ( E ) List of genes and their representative pathways whose promoters were bound by SMYD3, as predicted by KEGG pathway analysis.
Chip Seq Analysis, supplied by WholeGenome LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/chip-seq+analysis/pm30535232-103-1-0?v=WholeGenome+LLC
Average 90 stars, based on 1 article reviews
chip-seq analysis - by Bioz Stars, 2026-07
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Image Search Results


Fig. 4.

Journal:

Article Title: In vitro analysis of DNA-protein interactions by proximity ligation

doi: 10.1073/pnas.0611229104

Figure Lengend Snippet: Fig. 4.

Article Snippet: The HNF-4α antibodies were purchased from Active Motif and from Santa Cruz Biotechnology (Santa Cruz, CA) (catalog no. C19).

Techniques:

Chromatin immunoprecipitation (ChIP) analysis of transcriptomic and genome-wide SMYD3 binding profiles in MB. ( A ) Heat map showing the distribution and peak intensity of SMYD3 genomic occupancy from 5 kb downstream to 5 kb upstream. ( B ) Schematic representation of peaks into promoter peaks, upstream peaks, intron peaks, exon peaks, and intergenic peaks; pie diagram showing the distribution of peaks. ( C ) Graph depicting the ChIP peak at the global TSS (green) vs. Input peak (orange). ( D ) Pathway analysis using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database showing SMYD3 enrichment scores. ( E ) List of genes and their representative pathways whose promoters were bound by SMYD3, as predicted by KEGG pathway analysis.

Journal: Cancers

Article Title: SMYD3 Promotes Cell Cycle Progression by Inducing Cyclin D3 Transcription and Stabilizing the Cyclin D1 Protein in Medulloblastoma

doi: 10.3390/cancers14071673

Figure Lengend Snippet: Chromatin immunoprecipitation (ChIP) analysis of transcriptomic and genome-wide SMYD3 binding profiles in MB. ( A ) Heat map showing the distribution and peak intensity of SMYD3 genomic occupancy from 5 kb downstream to 5 kb upstream. ( B ) Schematic representation of peaks into promoter peaks, upstream peaks, intron peaks, exon peaks, and intergenic peaks; pie diagram showing the distribution of peaks. ( C ) Graph depicting the ChIP peak at the global TSS (green) vs. Input peak (orange). ( D ) Pathway analysis using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database showing SMYD3 enrichment scores. ( E ) List of genes and their representative pathways whose promoters were bound by SMYD3, as predicted by KEGG pathway analysis.

Article Snippet: The anti-SMYD3 antibody ChIP-enriched DNA was sent for ChIP seq analysis (Arraystar Inc., Rockville, MD, USA).

Techniques: Chromatin Immunoprecipitation, Genome Wide, Binding Assay

SMYD3 binds to the Cyclin D3 promoter. ( A ) Representation of the cyclin D3 (CCND3) gene promoter sequence; (red circles) the EPD software detected four SMYD3 consensus binding sites (−1166, −890, −247, −121 bps) on the cyclin D3 gene promoter. (Blue box) Region −311 to +367 was identified by SMYD3_ChIP-seq analysis. ( B ) Agarose gel showing the PCR amplification of RI (ChIP identified sequence), RII (SMYD3 binding sites within RI), and RIII regions (negative control). ( C ) Scheme depicting the RI, RII, and RIII regions cloned into the pXPG reporter vector. ( D ) Sequence peaks showing the SMYD3 binding sites on the cloned CCND3 promoter regions within the pXPG plasmid. ( E , F ) Effect of SMYD3 on Cyclin D3 (RI region) promoter activity by luciferase reporter assay in D458 (top) and MB002 (bottom) cells. D458 and MB002 cells were transfected with shRNA or overexpression vectors targeting SMYD3 for 48 h or treated with BCI-121 (80 μM) for 24 h. The statistical significance * p < 0.05, ** p < 0.01, *** p < 0.001.

Journal: Cancers

Article Title: SMYD3 Promotes Cell Cycle Progression by Inducing Cyclin D3 Transcription and Stabilizing the Cyclin D1 Protein in Medulloblastoma

doi: 10.3390/cancers14071673

Figure Lengend Snippet: SMYD3 binds to the Cyclin D3 promoter. ( A ) Representation of the cyclin D3 (CCND3) gene promoter sequence; (red circles) the EPD software detected four SMYD3 consensus binding sites (−1166, −890, −247, −121 bps) on the cyclin D3 gene promoter. (Blue box) Region −311 to +367 was identified by SMYD3_ChIP-seq analysis. ( B ) Agarose gel showing the PCR amplification of RI (ChIP identified sequence), RII (SMYD3 binding sites within RI), and RIII regions (negative control). ( C ) Scheme depicting the RI, RII, and RIII regions cloned into the pXPG reporter vector. ( D ) Sequence peaks showing the SMYD3 binding sites on the cloned CCND3 promoter regions within the pXPG plasmid. ( E , F ) Effect of SMYD3 on Cyclin D3 (RI region) promoter activity by luciferase reporter assay in D458 (top) and MB002 (bottom) cells. D458 and MB002 cells were transfected with shRNA or overexpression vectors targeting SMYD3 for 48 h or treated with BCI-121 (80 μM) for 24 h. The statistical significance * p < 0.05, ** p < 0.01, *** p < 0.001.

Article Snippet: The anti-SMYD3 antibody ChIP-enriched DNA was sent for ChIP seq analysis (Arraystar Inc., Rockville, MD, USA).

Techniques: Sequencing, Software, Binding Assay, ChIP-sequencing, Agarose Gel Electrophoresis, Amplification, Negative Control, Clone Assay, Plasmid Preparation, Activity Assay, Luciferase, Reporter Assay, Transfection, shRNA, Over Expression