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A heat map of the 110 probe sets (identified for quality) indicating level of expression potentials in 10 development stages such as germination, seedling growth, tillering, stem elongation, booting, inflorescence emergence, anthesis, milk development, dough development, and ripening. The expression potentials of the 110 probe sets were estimated in 1,328 samples which were available in the Affymetrix®’s Triticum aestivum microarray database. The darkest red color represents the highest level of probe set expression potential. The expression potential is defined as the average of the top 1% signal values across all samples for a given probe set in a given platform. The heat map was generated in Genevestigator (Nebion AG, Zurich, Switzerland).

Journal: BMC Genomics

Article Title: Genome-wide transcriptome study in wheat identified candidate genes related to processing quality, majority of them showing interaction (quality x development) and having temporal and spatial distributions

doi: 10.1186/1471-2164-15-29

Figure Lengend Snippet: A heat map of the 110 probe sets (identified for quality) indicating level of expression potentials in 10 development stages such as germination, seedling growth, tillering, stem elongation, booting, inflorescence emergence, anthesis, milk development, dough development, and ripening. The expression potentials of the 110 probe sets were estimated in 1,328 samples which were available in the Affymetrix®’s Triticum aestivum microarray database. The darkest red color represents the highest level of probe set expression potential. The expression potential is defined as the average of the top 1% signal values across all samples for a given probe set in a given platform. The heat map was generated in Genevestigator (Nebion AG, Zurich, Switzerland).

Article Snippet: The probe sets were clustered for identification of the probe sets with similar expression profiles. v) Meta-analysis of the differentially expressed genes Affymetrix® wheat microarray expression data conducted in a wide variety of growth stages and tissues were available online.

Techniques: Expressing, Microarray, Generated

A heat map of the 110 probe sets (identified for quality) indicating level of expression potentials in 22 wheat tissues such as endosperm, glume, caryopsis, embryo, leaf, root, coleoptile, mesocotyl, seedling, sheath, shoot, shoot apex, leaf, flag leaf, crown, inflorescence, spikelet, pistil, anther, glumes, caryopsis, endosperm, embryo. The expression potentials of the 110 probe sets were estimated in 1,405 samples available in the Affymetrix®’s Triticum aestivum microarray database. The darkest red color represents the highest level of probe set expression. The expression potential is defined as the average of the top 1% signal values across all samples for a given probe set in a given platform. The heat map was generated in Genevestigator (Nebion AG, Zurich, Switzerland). ‘Root’ labelled at 16th column of the heatmap represents ‘roots of seedling’. ‘Crown’ labelled at 17 th column of the heatmap represents ‘Crown of seedling’.

Journal: BMC Genomics

Article Title: Genome-wide transcriptome study in wheat identified candidate genes related to processing quality, majority of them showing interaction (quality x development) and having temporal and spatial distributions

doi: 10.1186/1471-2164-15-29

Figure Lengend Snippet: A heat map of the 110 probe sets (identified for quality) indicating level of expression potentials in 22 wheat tissues such as endosperm, glume, caryopsis, embryo, leaf, root, coleoptile, mesocotyl, seedling, sheath, shoot, shoot apex, leaf, flag leaf, crown, inflorescence, spikelet, pistil, anther, glumes, caryopsis, endosperm, embryo. The expression potentials of the 110 probe sets were estimated in 1,405 samples available in the Affymetrix®’s Triticum aestivum microarray database. The darkest red color represents the highest level of probe set expression. The expression potential is defined as the average of the top 1% signal values across all samples for a given probe set in a given platform. The heat map was generated in Genevestigator (Nebion AG, Zurich, Switzerland). ‘Root’ labelled at 16th column of the heatmap represents ‘roots of seedling’. ‘Crown’ labelled at 17 th column of the heatmap represents ‘Crown of seedling’.

Article Snippet: The probe sets were clustered for identification of the probe sets with similar expression profiles. v) Meta-analysis of the differentially expressed genes Affymetrix® wheat microarray expression data conducted in a wide variety of growth stages and tissues were available online.

Techniques: Expressing, Microarray, Generated