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fiji plugin trackmate  (Oxford Instruments)
99
Oxford Instruments fiji plugin trackmate
Fiji Plugin Trackmate, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/fiji plugin trackmate/product/Oxford Instruments
Average 99 stars, based on 1 article reviews
fiji plugin trackmate - by Bioz Stars, 2026-04
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fiji plugin trackmate  (Nikon)
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Nikon fiji plugin trackmate
(A) Example images of wild type MEF nuclei with NLS-GFP and Cy3-dUTP used for tracking chromatin motion. Example <t>Trackmate</t> tracks for all measured chromatin foci domain motion tracked and example single chromatin domain foci track for untreated control (UNT, black), RNA Pol II inhibition (AAM, green), serum starved (orange), and serum add back (purple). (B) Mean squared displacement (MSD) plots of UNT, AAM, serum starved, and serum add back of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, with 20 nuclei per condition, except AAM with 10 nuclei. (C) Three example mean squared displacement (MSD) plots of the same nucleus serum starved (orange) and serum added back (purple) of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, for 3 nuclei. Serum starved and serum add back are paired measurements of the same nucleus before and after serum re-addition. Error bars represent standard error and statistical tests are one-way ANOVA with a post-hoc Tukey test except panel C Two-tailed paired Student’s T-test, with significance denoted by *= p<0.05, **= p<0.01, and ***=p<0.001. Scale bar =10µm.
Fiji Plugin Trackmate, supplied by Nikon, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/fiji plugin trackmate/product/Nikon
Average 90 stars, based on 1 article reviews
fiji plugin trackmate - by Bioz Stars, 2026-04
90/100 stars
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trackmate 7 fiji plugin  (ibidi GmbH)
90
ibidi GmbH trackmate 7 fiji plugin
(A) Example images of wild type MEF nuclei with NLS-GFP and Cy3-dUTP used for tracking chromatin motion. Example <t>Trackmate</t> tracks for all measured chromatin foci domain motion tracked and example single chromatin domain foci track for untreated control (UNT, black), RNA Pol II inhibition (AAM, green), serum starved (orange), and serum add back (purple). (B) Mean squared displacement (MSD) plots of UNT, AAM, serum starved, and serum add back of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, with 20 nuclei per condition, except AAM with 10 nuclei. (C) Three example mean squared displacement (MSD) plots of the same nucleus serum starved (orange) and serum added back (purple) of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, for 3 nuclei. Serum starved and serum add back are paired measurements of the same nucleus before and after serum re-addition. Error bars represent standard error and statistical tests are one-way ANOVA with a post-hoc Tukey test except panel C Two-tailed paired Student’s T-test, with significance denoted by *= p<0.05, **= p<0.01, and ***=p<0.001. Scale bar =10µm.
Trackmate 7 Fiji Plugin, supplied by ibidi GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/trackmate 7 fiji plugin/product/ibidi GmbH
Average 90 stars, based on 1 article reviews
trackmate 7 fiji plugin - by Bioz Stars, 2026-04
90/100 stars
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fiji plugin trackmate  (MathWorks Inc)
90
MathWorks Inc fiji plugin trackmate
(A) Example images of wild type MEF nuclei with NLS-GFP and Cy3-dUTP used for tracking chromatin motion. Example <t>Trackmate</t> tracks for all measured chromatin foci domain motion tracked and example single chromatin domain foci track for untreated control (UNT, black), RNA Pol II inhibition (AAM, green), serum starved (orange), and serum add back (purple). (B) Mean squared displacement (MSD) plots of UNT, AAM, serum starved, and serum add back of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, with 20 nuclei per condition, except AAM with 10 nuclei. (C) Three example mean squared displacement (MSD) plots of the same nucleus serum starved (orange) and serum added back (purple) of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, for 3 nuclei. Serum starved and serum add back are paired measurements of the same nucleus before and after serum re-addition. Error bars represent standard error and statistical tests are one-way ANOVA with a post-hoc Tukey test except panel C Two-tailed paired Student’s T-test, with significance denoted by *= p<0.05, **= p<0.01, and ***=p<0.001. Scale bar =10µm.
Fiji Plugin Trackmate, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/fiji plugin trackmate/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
fiji plugin trackmate - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier
version of the trackmate plugin  (MathWorks Inc)
90
MathWorks Inc version of the trackmate plugin
(A) Example images of wild type MEF nuclei with NLS-GFP and Cy3-dUTP used for tracking chromatin motion. Example <t>Trackmate</t> tracks for all measured chromatin foci domain motion tracked and example single chromatin domain foci track for untreated control (UNT, black), RNA Pol II inhibition (AAM, green), serum starved (orange), and serum add back (purple). (B) Mean squared displacement (MSD) plots of UNT, AAM, serum starved, and serum add back of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, with 20 nuclei per condition, except AAM with 10 nuclei. (C) Three example mean squared displacement (MSD) plots of the same nucleus serum starved (orange) and serum added back (purple) of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, for 3 nuclei. Serum starved and serum add back are paired measurements of the same nucleus before and after serum re-addition. Error bars represent standard error and statistical tests are one-way ANOVA with a post-hoc Tukey test except panel C Two-tailed paired Student’s T-test, with significance denoted by *= p<0.05, **= p<0.01, and ***=p<0.001. Scale bar =10µm.
Version Of The Trackmate Plugin, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/version of the trackmate plugin/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
version of the trackmate plugin - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier
trackmate plugin  (Loerke labs)
90
Loerke labs trackmate plugin
(A) Example images of wild type MEF nuclei with NLS-GFP and Cy3-dUTP used for tracking chromatin motion. Example <t>Trackmate</t> tracks for all measured chromatin foci domain motion tracked and example single chromatin domain foci track for untreated control (UNT, black), RNA Pol II inhibition (AAM, green), serum starved (orange), and serum add back (purple). (B) Mean squared displacement (MSD) plots of UNT, AAM, serum starved, and serum add back of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, with 20 nuclei per condition, except AAM with 10 nuclei. (C) Three example mean squared displacement (MSD) plots of the same nucleus serum starved (orange) and serum added back (purple) of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, for 3 nuclei. Serum starved and serum add back are paired measurements of the same nucleus before and after serum re-addition. Error bars represent standard error and statistical tests are one-way ANOVA with a post-hoc Tukey test except panel C Two-tailed paired Student’s T-test, with significance denoted by *= p<0.05, **= p<0.01, and ***=p<0.001. Scale bar =10µm.
Trackmate Plugin, supplied by Loerke labs, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/trackmate plugin/product/Loerke labs
Average 90 stars, based on 1 article reviews
trackmate plugin - by Bioz Stars, 2026-04
90/100 stars
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particle tracking algorithm (fiji-trackmate plugin)  (MathWorks Inc)
90
MathWorks Inc particle tracking algorithm (fiji-trackmate plugin)
(A) Example images of wild type MEF nuclei with NLS-GFP and Cy3-dUTP used for tracking chromatin motion. Example <t>Trackmate</t> tracks for all measured chromatin foci domain motion tracked and example single chromatin domain foci track for untreated control (UNT, black), RNA Pol II inhibition (AAM, green), serum starved (orange), and serum add back (purple). (B) Mean squared displacement (MSD) plots of UNT, AAM, serum starved, and serum add back of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, with 20 nuclei per condition, except AAM with 10 nuclei. (C) Three example mean squared displacement (MSD) plots of the same nucleus serum starved (orange) and serum added back (purple) of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, for 3 nuclei. Serum starved and serum add back are paired measurements of the same nucleus before and after serum re-addition. Error bars represent standard error and statistical tests are one-way ANOVA with a post-hoc Tukey test except panel C Two-tailed paired Student’s T-test, with significance denoted by *= p<0.05, **= p<0.01, and ***=p<0.001. Scale bar =10µm.
Particle Tracking Algorithm (Fiji Trackmate Plugin), supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/particle tracking algorithm (fiji-trackmate plugin)/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
particle tracking algorithm (fiji-trackmate plugin) - by Bioz Stars, 2026-04
90/100 stars
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trackmate plugin for imagej  (MathWorks Inc)
90
MathWorks Inc trackmate plugin for imagej
(A) Example images of wild type MEF nuclei with NLS-GFP and Cy3-dUTP used for tracking chromatin motion. Example <t>Trackmate</t> tracks for all measured chromatin foci domain motion tracked and example single chromatin domain foci track for untreated control (UNT, black), RNA Pol II inhibition (AAM, green), serum starved (orange), and serum add back (purple). (B) Mean squared displacement (MSD) plots of UNT, AAM, serum starved, and serum add back of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, with 20 nuclei per condition, except AAM with 10 nuclei. (C) Three example mean squared displacement (MSD) plots of the same nucleus serum starved (orange) and serum added back (purple) of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, for 3 nuclei. Serum starved and serum add back are paired measurements of the same nucleus before and after serum re-addition. Error bars represent standard error and statistical tests are one-way ANOVA with a post-hoc Tukey test except panel C Two-tailed paired Student’s T-test, with significance denoted by *= p<0.05, **= p<0.01, and ***=p<0.001. Scale bar =10µm.
Trackmate Plugin For Imagej, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/trackmate plugin for imagej/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
trackmate plugin for imagej - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier

Image Search Results


(A) Example images of wild type MEF nuclei with NLS-GFP and Cy3-dUTP used for tracking chromatin motion. Example Trackmate tracks for all measured chromatin foci domain motion tracked and example single chromatin domain foci track for untreated control (UNT, black), RNA Pol II inhibition (AAM, green), serum starved (orange), and serum add back (purple). (B) Mean squared displacement (MSD) plots of UNT, AAM, serum starved, and serum add back of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, with 20 nuclei per condition, except AAM with 10 nuclei. (C) Three example mean squared displacement (MSD) plots of the same nucleus serum starved (orange) and serum added back (purple) of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, for 3 nuclei. Serum starved and serum add back are paired measurements of the same nucleus before and after serum re-addition. Error bars represent standard error and statistical tests are one-way ANOVA with a post-hoc Tukey test except panel C Two-tailed paired Student’s T-test, with significance denoted by *= p<0.05, **= p<0.01, and ***=p<0.001. Scale bar =10µm.

Journal: bioRxiv

Article Title: Transcriptional activity generates chromatin motion that drives nuclear blebbing

doi: 10.1101/2025.05.20.655131

Figure Lengend Snippet: (A) Example images of wild type MEF nuclei with NLS-GFP and Cy3-dUTP used for tracking chromatin motion. Example Trackmate tracks for all measured chromatin foci domain motion tracked and example single chromatin domain foci track for untreated control (UNT, black), RNA Pol II inhibition (AAM, green), serum starved (orange), and serum add back (purple). (B) Mean squared displacement (MSD) plots of UNT, AAM, serum starved, and serum add back of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, with 20 nuclei per condition, except AAM with 10 nuclei. (C) Three example mean squared displacement (MSD) plots of the same nucleus serum starved (orange) and serum added back (purple) of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, for 3 nuclei. Serum starved and serum add back are paired measurements of the same nucleus before and after serum re-addition. Error bars represent standard error and statistical tests are one-way ANOVA with a post-hoc Tukey test except panel C Two-tailed paired Student’s T-test, with significance denoted by *= p<0.05, **= p<0.01, and ***=p<0.001. Scale bar =10µm.

Article Snippet: Chromatin motion tracking was achieved using both Nikon NIS Elements the FIJI plugin Trackmate.

Techniques: Control, Inhibition, Two Tailed Test

(A) Mean squared displacement (MSD) plots of UNT, and BO2 of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, 10 nuclei per condition. (B) Example images of wild type MEF nuclei with CY3-dUTP used for tracking chromatin motion. Example trackmate tracks for all measured chromatin foci domain motion tracked and example single chromatin domain foci track for untreated control (UNT, black) and BO2 (blue). (C) Example images of normal and blebbed MEF wild type nuclei stained with Hoechst and graph of blebbing percentage in normal (black outline), VPA (gray fill), and BO2 (blue fill). (D) Example images of a MEF nuclear bleb reabsorption and graph of the percentage of bleb reabsorption events for UNT and BO2 treated MEF cells. For C and D N=3 with n> 50 cells precondition. (E-G) Dual micropipette micromanipulation nuclear spring constant measurements for (X) short extension > 3 µm and (X) long extension < 3 µm for MEF untreated (UNT, n = 13) and B02-treated (n = 11) nuclei. Error bars represent standard error and statistical tests are two-tailed (C,D) paired or (A, F, G) unpaired Student’s t-test with significance denoted by *= p<0.05, **= p<0.01, and ***=p<0.001. Scale bar =10µm.

Journal: bioRxiv

Article Title: Transcriptional activity generates chromatin motion that drives nuclear blebbing

doi: 10.1101/2025.05.20.655131

Figure Lengend Snippet: (A) Mean squared displacement (MSD) plots of UNT, and BO2 of >8 foci averaged per nucleus over 75 seconds, which is half of full tracking of 150 seconds, 10 nuclei per condition. (B) Example images of wild type MEF nuclei with CY3-dUTP used for tracking chromatin motion. Example trackmate tracks for all measured chromatin foci domain motion tracked and example single chromatin domain foci track for untreated control (UNT, black) and BO2 (blue). (C) Example images of normal and blebbed MEF wild type nuclei stained with Hoechst and graph of blebbing percentage in normal (black outline), VPA (gray fill), and BO2 (blue fill). (D) Example images of a MEF nuclear bleb reabsorption and graph of the percentage of bleb reabsorption events for UNT and BO2 treated MEF cells. For C and D N=3 with n> 50 cells precondition. (E-G) Dual micropipette micromanipulation nuclear spring constant measurements for (X) short extension > 3 µm and (X) long extension < 3 µm for MEF untreated (UNT, n = 13) and B02-treated (n = 11) nuclei. Error bars represent standard error and statistical tests are two-tailed (C,D) paired or (A, F, G) unpaired Student’s t-test with significance denoted by *= p<0.05, **= p<0.01, and ***=p<0.001. Scale bar =10µm.

Article Snippet: Chromatin motion tracking was achieved using both Nikon NIS Elements the FIJI plugin Trackmate.

Techniques: Control, Staining, Micromanipulation, Two Tailed Test