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stereopy  (Complete Genomics Inc)


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    Complete Genomics Inc stereopy
    Stereopy, supplied by Complete Genomics Inc, used in various techniques. Bioz Stars score: 99/100, based on 465 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/stereopy/Stereo-seq+Transcriptomics+Set+for+FFPE/bio_rxiv__64898__2026__04__21__719788-344-7-9
    Average 99 stars, based on 465 article reviews
    stereopy - by Bioz Stars, 2026-09
    99/100 stars

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    Related Articles

    Spatial Transcriptomics:

    Article Title: Dissecting inter-focal heterogeneity and convergent immunosuppressive ecosystems in multifocal hepatocellular carcinoma through single-cell and spatial multi-omics
    Article Snippet: .. We analyzed the spatial transcriptomics data using Stereopy ( https://github.com/STOmics/Stereopy ), a comprehensive toolkit tailored for the processing and visualization of Stereo-seq data. ..

    Expressing:

    Article Title: Spatial transcriptome reveals the region-specific genes and pathways regulated by Satb2 in neocortical development
    Article Snippet: .. We then used Stereopy (version 1.0.0) ( https://github.com/STOmics/Stereopy ) to process the expression matrix. ..

    Article Title: Cancer cells co-opt an inter-organ neuroimmune circuit to escape immune surveillance.
    Article Snippet: Article Cancer cells co-opt an inter-organ neuroimmune circuit to escape immune surveillance

    other:

    Article Title: A spatiotemporal transcriptomic atlas of mouse placentation
    Article Snippet: Stereopy , https://github.com/STOmics/Stereopy , V0.11.0.

    Article Title: Lamination-based organoid spatially resolved transcriptomics technique for primary lung and liver organoid characterization.
    Article Snippet: Primary tissue-derived organoids are small-in-size and contain rare cell populations when sectioned into thin tissue slides.. This is a standardized protocol for tissue processing to perform spatial transcriptomics.. The sectioning is labor-intensive and the protocol has not yet been proven to be competent in spatial transcriptomic profiling.

    Marker:

    Article Title: Multiple-omics analyses of the Alviniconcha holobiont reveal multi-faceted adaptations to deep-sea hydrothermal vents
    Article Snippet: .. The resulting cells were processed using Scanpy ( ) and Stereopy ( https://github.com/STOmics/Stereopy ), followed by normalization, marker gene selection, PCA dimensionality reduction, and clustering. .. According to the manufacturer’s instructions, total RNA was extracted using an Eastep ® Super Total RNA Extraction Kit (Promega, USA) and purified using the RNA purification and recovery Kit (Genstone, China).

    Selection:

    Article Title: Multiple-omics analyses of the Alviniconcha holobiont reveal multi-faceted adaptations to deep-sea hydrothermal vents
    Article Snippet: .. The resulting cells were processed using Scanpy ( ) and Stereopy ( https://github.com/STOmics/Stereopy ), followed by normalization, marker gene selection, PCA dimensionality reduction, and clustering. .. According to the manufacturer’s instructions, total RNA was extracted using an Eastep ® Super Total RNA Extraction Kit (Promega, USA) and purified using the RNA purification and recovery Kit (Genstone, China).



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    Image Search Results


    Journal: Cell Discovery

    Article Title: A spatiotemporal transcriptomic atlas of mouse placentation

    doi: 10.1038/s41421-024-00740-6

    Figure Lengend Snippet:

    Article Snippet: The gef files were further converted to loom format using the generate_loom function in Stereopy [ https://github.com/STOmics/Stereopy ].

    Techniques: