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Parse Biosciences split pipe
Split Pipe, supplied by Parse Biosciences, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/split+pipe/pipe+pipeline+split/bio_rxiv__64898__2026__06__01__729221-315-15-17
Average 86 stars, based on 1 article reviews
split pipe - by Bioz Stars, 2026-11
86/100 stars

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Related Articles

Sequencing:

Article Title: Hypoxia promotes airway differentiation in the human lung epithelium.
Article Snippet: The libraries were multiplexed and sequenced by BGI Group in one T7 lane to achieve an average of 63,000 raw PE reads per cell of estimated 82,391 total cells. .. The sequencing data was initially processed with split-pipe (Version 1.1.1, Parse Biosciences) to combine sublibraries. ..

Article Title: Distinct functions of PBRM1 and BAP1 reconcile the course of kidney cancer evolution and disease progression
Article Snippet: The quality and fragment size distribution of the final library were assessed using the TapeStation 4200, and libraries were sequenced at an average depth of 60,000 PE100 reads per cell on the Illumina NovaSeq 6000 at the Genomics Facility at the Francis Crick Institute. .. Data processing Raw FASTQ files were processed using the Parse Bioscience pipeline, split-pipe (v1.2.1), with default parameters to align sequencing reads to the GRCh38 human genome, demultiplex samples, and quantify gene expression as a count matrix. ..

other:

Article Title: Protein-state dysregulation and sex-specific neurodevelopmental signatures in schizophrenia forebrain organoids
Article Snippet: Primary data processing was performed using bcl2fastq (v2.20.0, Illumina) to generate FASTQ files, followed by split-pipe (v1.6.1, Parse Biosciences) for read alignment and count matrix generation.

Gene Expression:

Article Title: Distinct functions of PBRM1 and BAP1 reconcile the course of kidney cancer evolution and disease progression
Article Snippet: The quality and fragment size distribution of the final library were assessed using the TapeStation 4200, and libraries were sequenced at an average depth of 60,000 PE100 reads per cell on the Illumina NovaSeq 6000 at the Genomics Facility at the Francis Crick Institute. .. Data processing Raw FASTQ files were processed using the Parse Bioscience pipeline, split-pipe (v1.2.1), with default parameters to align sequencing reads to the GRCh38 human genome, demultiplex samples, and quantify gene expression as a count matrix. ..

Software:

Article Title: Circulating pre-osteoclasts are primed for osteoclast fate and synovial tissue homing in psoriatic arthritis
Article Snippet: .. Quality-control and alignment was completed by Abigal Edwards (CRUK Genomics), using Parse Biosciences “split-pipe” software, aligning each sublibrary to the GRCh38 genome with ensemble annotation version 111. ..



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Parse Biosciences split pipe
Split Pipe, supplied by Parse Biosciences, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/split+pipe/pipe+pipeline+split/bio_rxiv__64898__2026__06__01__729221-315-15-17
Average 86 stars, based on 1 article reviews
split pipe - by Bioz Stars, 2026-11
86/100 stars
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Parse Biosciences parse biosciences split pipe workflow
(A) <t>Workflow</t> schematic: CMs and non-CMs are processed in separate libraries; CM libraries are sequenced at increased depth. (B) Barcode-rank plot for a representative CM-only sample. (C–D) Sequencing-saturation curves for transcripts (C) and genes (D) in CM-only libraries; each curve represents one sublibrary. (E) Quality control (QC) summaries for CMs: transcripts per cell (left), genes per cell (middle), and mitochondrial RNA fraction (mt%; right). (F) Feature plots of canonical markers in the CM library—CMs ( Tnnt2, Myh6, Ryr2 ) and endothelial cells ( Cdh5, Pecam1 ), together with Seurat cluster annotations. Red circles highlight cluster 10, a small contaminating endothelial cell population.
Parse Biosciences Split Pipe Workflow, supplied by Parse Biosciences, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/split+pipe/pipe+pipeline+split/bio_rxiv__64898__2026__04__28__721288-179-8-8
Average 86 stars, based on 1 article reviews
parse biosciences split pipe workflow - by Bioz Stars, 2026-11
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Parse Biosciences split pipe v 1 3 1 pipeline
(A) <t>Workflow</t> schematic: CMs and non-CMs are processed in separate libraries; CM libraries are sequenced at increased depth. (B) Barcode-rank plot for a representative CM-only sample. (C–D) Sequencing-saturation curves for transcripts (C) and genes (D) in CM-only libraries; each curve represents one sublibrary. (E) Quality control (QC) summaries for CMs: transcripts per cell (left), genes per cell (middle), and mitochondrial RNA fraction (mt%; right). (F) Feature plots of canonical markers in the CM library—CMs ( Tnnt2, Myh6, Ryr2 ) and endothelial cells ( Cdh5, Pecam1 ), together with Seurat cluster annotations. Red circles highlight cluster 10, a small contaminating endothelial cell population.
Split Pipe V 1 3 1 Pipeline, supplied by Parse Biosciences, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/split+pipe/pipe+pipeline+split/10__1016_slash_j__isci__2026__115584-267-8-11
Average 86 stars, based on 1 article reviews
split pipe v 1 3 1 pipeline - by Bioz Stars, 2026-11
86/100 stars
  Buy from Supplier

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Parse Biosciences split pipe pipeline
(A) <t>Workflow</t> schematic: CMs and non-CMs are processed in separate libraries; CM libraries are sequenced at increased depth. (B) Barcode-rank plot for a representative CM-only sample. (C–D) Sequencing-saturation curves for transcripts (C) and genes (D) in CM-only libraries; each curve represents one sublibrary. (E) Quality control (QC) summaries for CMs: transcripts per cell (left), genes per cell (middle), and mitochondrial RNA fraction (mt%; right). (F) Feature plots of canonical markers in the CM library—CMs ( Tnnt2, Myh6, Ryr2 ) and endothelial cells ( Cdh5, Pecam1 ), together with Seurat cluster annotations. Red circles highlight cluster 10, a small contaminating endothelial cell population.
Split Pipe Pipeline, supplied by Parse Biosciences, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/split+pipe/pipe+pipeline+split/pm41912267-519-11-16
Average 86 stars, based on 1 article reviews
split pipe pipeline - by Bioz Stars, 2026-11
86/100 stars
  Buy from Supplier

86
Parse Biosciences parse biosciences split pipe pipeline
(A) <t>Workflow</t> schematic: CMs and non-CMs are processed in separate libraries; CM libraries are sequenced at increased depth. (B) Barcode-rank plot for a representative CM-only sample. (C–D) Sequencing-saturation curves for transcripts (C) and genes (D) in CM-only libraries; each curve represents one sublibrary. (E) Quality control (QC) summaries for CMs: transcripts per cell (left), genes per cell (middle), and mitochondrial RNA fraction (mt%; right). (F) Feature plots of canonical markers in the CM library—CMs ( Tnnt2, Myh6, Ryr2 ) and endothelial cells ( Cdh5, Pecam1 ), together with Seurat cluster annotations. Red circles highlight cluster 10, a small contaminating endothelial cell population.
Parse Biosciences Split Pipe Pipeline, supplied by Parse Biosciences, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/split+pipe/pipe+pipeline+split/pmc13063377-217-15-20
Average 86 stars, based on 1 article reviews
parse biosciences split pipe pipeline - by Bioz Stars, 2026-11
86/100 stars
  Buy from Supplier

86
Parse Biosciences split pipe v1 5 1
(A) <t>Workflow</t> schematic: CMs and non-CMs are processed in separate libraries; CM libraries are sequenced at increased depth. (B) Barcode-rank plot for a representative CM-only sample. (C–D) Sequencing-saturation curves for transcripts (C) and genes (D) in CM-only libraries; each curve represents one sublibrary. (E) Quality control (QC) summaries for CMs: transcripts per cell (left), genes per cell (middle), and mitochondrial RNA fraction (mt%; right). (F) Feature plots of canonical markers in the CM library—CMs ( Tnnt2, Myh6, Ryr2 ) and endothelial cells ( Cdh5, Pecam1 ), together with Seurat cluster annotations. Red circles highlight cluster 10, a small contaminating endothelial cell population.
Split Pipe V1 5 1, supplied by Parse Biosciences, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/split+pipe/pipe+pipeline+split/pmc13063377-74-0-3
Average 86 stars, based on 1 article reviews
split pipe v1 5 1 - by Bioz Stars, 2026-11
86/100 stars
  Buy from Supplier

Image Search Results


(A) Workflow schematic: CMs and non-CMs are processed in separate libraries; CM libraries are sequenced at increased depth. (B) Barcode-rank plot for a representative CM-only sample. (C–D) Sequencing-saturation curves for transcripts (C) and genes (D) in CM-only libraries; each curve represents one sublibrary. (E) Quality control (QC) summaries for CMs: transcripts per cell (left), genes per cell (middle), and mitochondrial RNA fraction (mt%; right). (F) Feature plots of canonical markers in the CM library—CMs ( Tnnt2, Myh6, Ryr2 ) and endothelial cells ( Cdh5, Pecam1 ), together with Seurat cluster annotations. Red circles highlight cluster 10, a small contaminating endothelial cell population.

Journal: bioRxiv

Article Title: High throughput single-cell RNA sequencing of intact adult cardiomyocytes and non-myocytes using a split-pool approach

doi: 10.64898/2026.04.28.721288

Figure Lengend Snippet: (A) Workflow schematic: CMs and non-CMs are processed in separate libraries; CM libraries are sequenced at increased depth. (B) Barcode-rank plot for a representative CM-only sample. (C–D) Sequencing-saturation curves for transcripts (C) and genes (D) in CM-only libraries; each curve represents one sublibrary. (E) Quality control (QC) summaries for CMs: transcripts per cell (left), genes per cell (middle), and mitochondrial RNA fraction (mt%; right). (F) Feature plots of canonical markers in the CM library—CMs ( Tnnt2, Myh6, Ryr2 ) and endothelial cells ( Cdh5, Pecam1 ), together with Seurat cluster annotations. Red circles highlight cluster 10, a small contaminating endothelial cell population.

Article Snippet: Upstream processing was performed on AWS using the Parse Biosciences split-pipe workflow with default parameters.

Techniques: Sequencing, Control