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Characteristics of an inter-specific chickpea genetic linkage (transcript) map comprising eight chromosomes constructed using a RIL mapping population (ICC 4958 × ICC 17163).
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Characteristics of an inter-specific chickpea genetic linkage (transcript) map comprising eight chromosomes constructed using a RIL mapping population (ICC 4958 × ICC 17163).

Journal: Scientific Reports

Article Title: Transcriptome landscape of perennial wild Cicer microphyllum uncovers functionally relevant molecular tags regulating agronomic traits in chickpea

doi: 10.1038/srep33616

Figure Lengend Snippet: Characteristics of an inter-specific chickpea genetic linkage (transcript) map comprising eight chromosomes constructed using a RIL mapping population (ICC 4958 × ICC 17163).

Article Snippet: The genotyping data of drought-responsive root-specific differentially expressed gene-derived SSR (genotyped by gel-based assay) and SNP (Sequenom MALDI-TOF MassARRAY) markers revealing polymorphism between mapping parental accessions (ICC 4958 and ICC 17163) was utilized to generate an inter-specific genetic linkage map (transcript map) at a higher LOD (logarithm of odds) threshold (>4.0) with Kosambi mapping function following Saxena et al . and Bajaj et al . .

Techniques: Construct

A left-side scale bar spanning 5 cM uniform genetic distance interval represents the genetic distance (cM) of SSR and SNP marker loci mapped on the eight LGs/chromosomes. The identity of the marker loci integrated on the chromosomes are represented on the right side of the chromosomes. The details of markers flanking and tightly linked to the major drought yield QTLs are mentioned in the . Orange and blue boxes indicate the QTLs governing yield per plant and harvest-index, respectively mapped on the chromosomes of a high-density transcript map. The SNPs used as anchor markers to construct a transcript map are illustrated with black colour lines. The non-synonymous/regulatory and synonymous SNPs derived from the differentially expressed genes are indicated with red and blue colour lines, respectively.

Journal: Scientific Reports

Article Title: Transcriptome landscape of perennial wild Cicer microphyllum uncovers functionally relevant molecular tags regulating agronomic traits in chickpea

doi: 10.1038/srep33616

Figure Lengend Snippet: A left-side scale bar spanning 5 cM uniform genetic distance interval represents the genetic distance (cM) of SSR and SNP marker loci mapped on the eight LGs/chromosomes. The identity of the marker loci integrated on the chromosomes are represented on the right side of the chromosomes. The details of markers flanking and tightly linked to the major drought yield QTLs are mentioned in the . Orange and blue boxes indicate the QTLs governing yield per plant and harvest-index, respectively mapped on the chromosomes of a high-density transcript map. The SNPs used as anchor markers to construct a transcript map are illustrated with black colour lines. The non-synonymous/regulatory and synonymous SNPs derived from the differentially expressed genes are indicated with red and blue colour lines, respectively.

Article Snippet: The genotyping data of drought-responsive root-specific differentially expressed gene-derived SSR (genotyped by gel-based assay) and SNP (Sequenom MALDI-TOF MassARRAY) markers revealing polymorphism between mapping parental accessions (ICC 4958 and ICC 17163) was utilized to generate an inter-specific genetic linkage map (transcript map) at a higher LOD (logarithm of odds) threshold (>4.0) with Kosambi mapping function following Saxena et al . and Bajaj et al . .

Techniques: Marker, Construct, Derivative Assay