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reference snp data  (Biotechnology Information)

 
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    Biotechnology Information reference snp data
    A Study design and participant selection. Information of the Arao cohort included MMSE score, diagnostic status, genome-wide <t>SNP</t> <t>data,</t> and APOE genotype. Of 1,526 baseline participants, 1,521 with consent for genetic analysis were selected and subjected to principal component analysis (PCA). After quality control, 1,310 participants were retained for PRS construction. Participants with complete data were included in subsequent analyses ( N = 1,301). B Scatter plot of the first and second principal components (PCs) for study participants ( N = 1,521) and the 1000 Genomes project samples ( N = 2,504). Each point represents an individual based on genome-wide SNP data and is colored by population: AFR, African; AMR, Admixed American; EAS, East Asian; SAS, South Asian; EUR, European.
    Reference Snp Data, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/snp+data/reference+report+snp/med_rxiv__64898__2026__03__26__26349120-62-8-23
    Average 86 stars, based on 1 article reviews
    reference snp data - by Bioz Stars, 2026-09
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    1) Product Images from "Population-specific polygenic risk for Alzheimer’s disease is associated with Mini-Mental State Examination-based cognitive decline in a Japanese cohort"

    Article Title: Population-specific polygenic risk for Alzheimer’s disease is associated with Mini-Mental State Examination-based cognitive decline in a Japanese cohort

    Journal: medRxiv

    doi: 10.64898/2026.03.26.26349120

    A Study design and participant selection. Information of the Arao cohort included MMSE score, diagnostic status, genome-wide SNP data, and APOE genotype. Of 1,526 baseline participants, 1,521 with consent for genetic analysis were selected and subjected to principal component analysis (PCA). After quality control, 1,310 participants were retained for PRS construction. Participants with complete data were included in subsequent analyses ( N = 1,301). B Scatter plot of the first and second principal components (PCs) for study participants ( N = 1,521) and the 1000 Genomes project samples ( N = 2,504). Each point represents an individual based on genome-wide SNP data and is colored by population: AFR, African; AMR, Admixed American; EAS, East Asian; SAS, South Asian; EUR, European.
    Figure Legend Snippet: A Study design and participant selection. Information of the Arao cohort included MMSE score, diagnostic status, genome-wide SNP data, and APOE genotype. Of 1,526 baseline participants, 1,521 with consent for genetic analysis were selected and subjected to principal component analysis (PCA). After quality control, 1,310 participants were retained for PRS construction. Participants with complete data were included in subsequent analyses ( N = 1,301). B Scatter plot of the first and second principal components (PCs) for study participants ( N = 1,521) and the 1000 Genomes project samples ( N = 2,504). Each point represents an individual based on genome-wide SNP data and is colored by population: AFR, African; AMR, Admixed American; EAS, East Asian; SAS, South Asian; EUR, European.

    Techniques Used: Selection, Diagnostic Assay, Genome Wide, Control

    Related Articles

    other:

    Article Title: Association of rs3750920 polymorphism in TOLLIP with clinical characteristics of fibrosing interstitial lung diseases in Japanese
    Article Snippet: SNP data provided by the National Center for Biotechnology Information showed a rs3750920 T allele frequency of 43% in Europeans and 32% in east Asians .

    Article Title: Association of rs3750920 polymorphism in TOLLIP with clinical characteristics of fibrosing interstitial lung diseases in Japanese.
    Article Snippet: SNP data provided by the National Center for Biotechnology Information showed a rs3750920 T allele frequency of 43% in Europeans and 32% in east Asians16.

    Article Title: Genetic Diversity and Evaluation of Agro-Morphological Traits in Lettuce Core Collection
    Article Snippet: The SNP data presented in this study are deposited in the National Agricultural Biotechnology Information Center repository under accession number NV-0906.

    Generated:

    Article Title: Genome-Wide Association Study of Phenolic Content and Antioxidant Properties in Eggplant Germplasm.
    Article Snippet: .. The SNP data generated from the 288 eggplant accessions, including the ones in our study, have been submitted to the National Agricultural Biotechnology Information Center (NABIC) and can be accessed using the accession number NV-0776. ..

    Genome Wide:

    Article Title: Development of informative SNP markers for Capsicum species identification using phenotypic and genomic data
    Article Snippet: .. All SNP data employed in the genome-wide association analysis have been deposited in the National Agricultural Biotechnology Information Center (NABIC) repository (https://nabic.rda.go.kr/nolog/NV-0728-000001/snpVcfView. do) and assigned the accession identifier NV-0728. ..

    Residue:

    Article Title: Association of Cytotoxic T-Lymphocyte Antigen-4 Gene Polymorphism with Type 1 Diabetes Mellitus: In silico Analysis of Biological Features of CTLA-4 Protein on Ethiopian Population
    Article Snippet: The PCR products were also digested by restriction enzyme (BbVI, R0173S, New England Bio Labs) and subjected to 2% agarose gel electrophoresis along with 100bp-3000 bp DNA ladder as references and nuclease-free water as negative control were loaded on the well. .. SNP data (SNP ID, accession number, protein, position, and residue change) was obtained from the databases of the National Centres for Biotechnology Information (dbNCBI). ..

    Article Title: Computational evaluation of AKT2 mutations reveals R274H and R467W as potential drivers of protein instability and inhibitor resistance in cancer therapy
    Article Snippet: .. The SNP data (SNP ID, location, variant type, and residue alteration) for the human the AKT2 gene was retrieved from the National Center for Biotechnology Information (NCBI) dbSNP (Database of Single Nucleotide Polymorphism) database [ ] and cross validated using the Ensembl genome browsers’ [ ] variant table. ..

    Variant Assay:

    Article Title: Computational evaluation of AKT2 mutations reveals R274H and R467W as potential drivers of protein instability and inhibitor resistance in cancer therapy
    Article Snippet: .. The SNP data (SNP ID, location, variant type, and residue alteration) for the human the AKT2 gene was retrieved from the National Center for Biotechnology Information (NCBI) dbSNP (Database of Single Nucleotide Polymorphism) database [ ] and cross validated using the Ensembl genome browsers’ [ ] variant table. ..



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    A Study design and participant selection. Information of the Arao cohort included MMSE score, diagnostic status, genome-wide SNP data, and APOE genotype. Of 1,526 baseline participants, 1,521 with consent for genetic analysis were selected and subjected to principal component analysis (PCA). After quality control, 1,310 participants were retained for PRS construction. Participants with complete data were included in subsequent analyses ( N = 1,301). B Scatter plot of the first and second principal components (PCs) for study participants ( N = 1,521) and the 1000 Genomes project samples ( N = 2,504). Each point represents an individual based on genome-wide SNP data and is colored by population: AFR, African; AMR, Admixed American; EAS, East Asian; SAS, South Asian; EUR, European.

    Journal: medRxiv

    Article Title: Population-specific polygenic risk for Alzheimer’s disease is associated with Mini-Mental State Examination-based cognitive decline in a Japanese cohort

    doi: 10.64898/2026.03.26.26349120

    Figure Lengend Snippet: A Study design and participant selection. Information of the Arao cohort included MMSE score, diagnostic status, genome-wide SNP data, and APOE genotype. Of 1,526 baseline participants, 1,521 with consent for genetic analysis were selected and subjected to principal component analysis (PCA). After quality control, 1,310 participants were retained for PRS construction. Participants with complete data were included in subsequent analyses ( N = 1,301). B Scatter plot of the first and second principal components (PCs) for study participants ( N = 1,521) and the 1000 Genomes project samples ( N = 2,504). Each point represents an individual based on genome-wide SNP data and is colored by population: AFR, African; AMR, Admixed American; EAS, East Asian; SAS, South Asian; EUR, European.

    Article Snippet: Curation of SNP data was conducted using a reference SNP data (GCF_000001405.25.vcf.gz) in Variant Call Format (VCF) downloaded from the National Center for Biotechnology Information (NCBI) dbSNP FTP site ( https://ftp.ncbi.nih.gov/snp/latest_release/VCF/ ) ( , ) and dbSNP 147 summarized data from ANNOVAR ( ).

    Techniques: Selection, Diagnostic Assay, Genome Wide, Control