Review





Similar Products

slide seqv2 datasets5  (Broad Clinical Labs)
96
Broad Clinical Labs slide seqv2 datasets5
Slide Seqv2 Datasets5, supplied by Broad Clinical Labs, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/slide seqv2 datasets5/product/Broad Clinical Labs
Average 96 stars, based on 1 article reviews
slide seqv2 datasets5 - by Bioz Stars, 2026-05
96/100 stars
  Buy from Supplier
slide seqv2  (Nature Biotechnology)
86
Nature Biotechnology slide seqv2
Slide Seqv2, supplied by Nature Biotechnology, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/slide seqv2/product/Nature Biotechnology
Average 86 stars, based on 1 article reviews
slide seqv2 - by Bioz Stars, 2026-05
86/100 stars
  Buy from Supplier
mouse hippocampus slide seqv2 data  (Broad Clinical Labs)
96
Broad Clinical Labs mouse hippocampus slide seqv2 data
a MERFISH slice from the mouse hypothalamic preoptic region used as ground truth for benchmarking CellRefiner using a known cell-to-spot mapping. Zoomed-in view shows a region of the tissue structure around the ependymal cells (yellow) for creation of simulated data. Cells are aggregated to form pseudo-Visium spot data, which is used to initialize the physical model, followed by the spatially refined output. b Spatially perturbed MERFISH data before and after CellRefiner processing, with ependymal cells in red, and density estimation of the first-time step and last time step of the refinement process. c Refinement error calculated as KL-divergence between density estimations of CellRefiner output and ground truth over simulation iterations for ependymal cells. d Performance comparison of spatial mapping methods using multiple metrics. Comparison of CellRefiner, CellTrek, CytoSPACE, and Tangram on four single-cell resolution spatial datasets. Bar heights represent mean values of metrics with error bars representing standard error of the mean. For the three metrics across cell types, each dot represents one cell type and n indicates the number of cell types. For Euclidean distance across cells, n indicates the number of cells. Source data are provided in the Source Data file. e Reconstructed single-cell resolution spatial data by CellRefiner of MERFISH, seqFISH, <t>Slide-seqV2,</t> and STARmap data.
Mouse Hippocampus Slide Seqv2 Data, supplied by Broad Clinical Labs, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/mouse hippocampus slide seqv2 data/product/Broad Clinical Labs
Average 96 stars, based on 1 article reviews
mouse hippocampus slide seqv2 data - by Bioz Stars, 2026-05
96/100 stars
  Buy from Supplier
mouse hippocampus slide seqv2 data10  (Broad Clinical Labs)
96
Broad Clinical Labs mouse hippocampus slide seqv2 data10
a MERFISH slice from the mouse hypothalamic preoptic region used as ground truth for benchmarking CellRefiner using a known cell-to-spot mapping. Zoomed-in view shows a region of the tissue structure around the ependymal cells (yellow) for creation of simulated data. Cells are aggregated to form pseudo-Visium spot data, which is used to initialize the physical model, followed by the spatially refined output. b Spatially perturbed MERFISH data before and after CellRefiner processing, with ependymal cells in red, and density estimation of the first-time step and last time step of the refinement process. c Refinement error calculated as KL-divergence between density estimations of CellRefiner output and ground truth over simulation iterations for ependymal cells. d Performance comparison of spatial mapping methods using multiple metrics. Comparison of CellRefiner, CellTrek, CytoSPACE, and Tangram on four single-cell resolution spatial datasets. Bar heights represent mean values of metrics with error bars representing standard error of the mean. For the three metrics across cell types, each dot represents one cell type and n indicates the number of cell types. For Euclidean distance across cells, n indicates the number of cells. Source data are provided in the Source Data file. e Reconstructed single-cell resolution spatial data by CellRefiner of MERFISH, seqFISH, <t>Slide-seqV2,</t> and STARmap data.
Mouse Hippocampus Slide Seqv2 Data10, supplied by Broad Clinical Labs, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/mouse hippocampus slide seqv2 data10/product/Broad Clinical Labs
Average 96 stars, based on 1 article reviews
mouse hippocampus slide seqv2 data10 - by Bioz Stars, 2026-05
96/100 stars
  Buy from Supplier
slide seqv2 kit  (TaKaRa)
95
TaKaRa slide seqv2 kit
a MERFISH slice from the mouse hypothalamic preoptic region used as ground truth for benchmarking CellRefiner using a known cell-to-spot mapping. Zoomed-in view shows a region of the tissue structure around the ependymal cells (yellow) for creation of simulated data. Cells are aggregated to form pseudo-Visium spot data, which is used to initialize the physical model, followed by the spatially refined output. b Spatially perturbed MERFISH data before and after CellRefiner processing, with ependymal cells in red, and density estimation of the first-time step and last time step of the refinement process. c Refinement error calculated as KL-divergence between density estimations of CellRefiner output and ground truth over simulation iterations for ependymal cells. d Performance comparison of spatial mapping methods using multiple metrics. Comparison of CellRefiner, CellTrek, CytoSPACE, and Tangram on four single-cell resolution spatial datasets. Bar heights represent mean values of metrics with error bars representing standard error of the mean. For the three metrics across cell types, each dot represents one cell type and n indicates the number of cell types. For Euclidean distance across cells, n indicates the number of cells. Source data are provided in the Source Data file. e Reconstructed single-cell resolution spatial data by CellRefiner of MERFISH, seqFISH, <t>Slide-seqV2,</t> and STARmap data.
Slide Seqv2 Kit, supplied by TaKaRa, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/slide seqv2 kit/product/TaKaRa
Average 95 stars, based on 1 article reviews
slide seqv2 kit - by Bioz Stars, 2026-05
95/100 stars
  Buy from Supplier
slide seqv2  (Spatial Transcriptomics Inc)
86
Spatial Transcriptomics Inc slide seqv2
a MERFISH slice from the mouse hypothalamic preoptic region used as ground truth for benchmarking CellRefiner using a known cell-to-spot mapping. Zoomed-in view shows a region of the tissue structure around the ependymal cells (yellow) for creation of simulated data. Cells are aggregated to form pseudo-Visium spot data, which is used to initialize the physical model, followed by the spatially refined output. b Spatially perturbed MERFISH data before and after CellRefiner processing, with ependymal cells in red, and density estimation of the first-time step and last time step of the refinement process. c Refinement error calculated as KL-divergence between density estimations of CellRefiner output and ground truth over simulation iterations for ependymal cells. d Performance comparison of spatial mapping methods using multiple metrics. Comparison of CellRefiner, CellTrek, CytoSPACE, and Tangram on four single-cell resolution spatial datasets. Bar heights represent mean values of metrics with error bars representing standard error of the mean. For the three metrics across cell types, each dot represents one cell type and n indicates the number of cell types. For Euclidean distance across cells, n indicates the number of cells. Source data are provided in the Source Data file. e Reconstructed single-cell resolution spatial data by CellRefiner of MERFISH, seqFISH, <t>Slide-seqV2,</t> and STARmap data.
Slide Seqv2, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/slide seqv2/product/Spatial Transcriptomics Inc
Average 86 stars, based on 1 article reviews
slide seqv2 - by Bioz Stars, 2026-05
86/100 stars
  Buy from Supplier
slide-seqv2  (Spatial Transcriptomics Inc)
90
Spatial Transcriptomics Inc slide-seqv2
a MERFISH slice from the mouse hypothalamic preoptic region used as ground truth for benchmarking CellRefiner using a known cell-to-spot mapping. Zoomed-in view shows a region of the tissue structure around the ependymal cells (yellow) for creation of simulated data. Cells are aggregated to form pseudo-Visium spot data, which is used to initialize the physical model, followed by the spatially refined output. b Spatially perturbed MERFISH data before and after CellRefiner processing, with ependymal cells in red, and density estimation of the first-time step and last time step of the refinement process. c Refinement error calculated as KL-divergence between density estimations of CellRefiner output and ground truth over simulation iterations for ependymal cells. d Performance comparison of spatial mapping methods using multiple metrics. Comparison of CellRefiner, CellTrek, CytoSPACE, and Tangram on four single-cell resolution spatial datasets. Bar heights represent mean values of metrics with error bars representing standard error of the mean. For the three metrics across cell types, each dot represents one cell type and n indicates the number of cell types. For Euclidean distance across cells, n indicates the number of cells. Source data are provided in the Source Data file. e Reconstructed single-cell resolution spatial data by CellRefiner of MERFISH, seqFISH, <t>Slide-seqV2,</t> and STARmap data.
Slide Seqv2, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/slide-seqv2/product/Spatial Transcriptomics Inc
Average 90 stars, based on 1 article reviews
slide-seqv2 - by Bioz Stars, 2026-05
90/100 stars
  Buy from Supplier

Image Search Results


a MERFISH slice from the mouse hypothalamic preoptic region used as ground truth for benchmarking CellRefiner using a known cell-to-spot mapping. Zoomed-in view shows a region of the tissue structure around the ependymal cells (yellow) for creation of simulated data. Cells are aggregated to form pseudo-Visium spot data, which is used to initialize the physical model, followed by the spatially refined output. b Spatially perturbed MERFISH data before and after CellRefiner processing, with ependymal cells in red, and density estimation of the first-time step and last time step of the refinement process. c Refinement error calculated as KL-divergence between density estimations of CellRefiner output and ground truth over simulation iterations for ependymal cells. d Performance comparison of spatial mapping methods using multiple metrics. Comparison of CellRefiner, CellTrek, CytoSPACE, and Tangram on four single-cell resolution spatial datasets. Bar heights represent mean values of metrics with error bars representing standard error of the mean. For the three metrics across cell types, each dot represents one cell type and n indicates the number of cell types. For Euclidean distance across cells, n indicates the number of cells. Source data are provided in the Source Data file. e Reconstructed single-cell resolution spatial data by CellRefiner of MERFISH, seqFISH, Slide-seqV2, and STARmap data.

Journal: Nature Communications

Article Title: Reconstructing single-cell resolution from spatial transcriptomics with CellRefiner

doi: 10.1038/s41467-026-70090-2

Figure Lengend Snippet: a MERFISH slice from the mouse hypothalamic preoptic region used as ground truth for benchmarking CellRefiner using a known cell-to-spot mapping. Zoomed-in view shows a region of the tissue structure around the ependymal cells (yellow) for creation of simulated data. Cells are aggregated to form pseudo-Visium spot data, which is used to initialize the physical model, followed by the spatially refined output. b Spatially perturbed MERFISH data before and after CellRefiner processing, with ependymal cells in red, and density estimation of the first-time step and last time step of the refinement process. c Refinement error calculated as KL-divergence between density estimations of CellRefiner output and ground truth over simulation iterations for ependymal cells. d Performance comparison of spatial mapping methods using multiple metrics. Comparison of CellRefiner, CellTrek, CytoSPACE, and Tangram on four single-cell resolution spatial datasets. Bar heights represent mean values of metrics with error bars representing standard error of the mean. For the three metrics across cell types, each dot represents one cell type and n indicates the number of cell types. For Euclidean distance across cells, n indicates the number of cells. Source data are provided in the Source Data file. e Reconstructed single-cell resolution spatial data by CellRefiner of MERFISH, seqFISH, Slide-seqV2, and STARmap data.

Article Snippet: The mouse hippocampus Slide-seqV2 data is available at the Broad Institute Single Cell Portal ( https://singlecell.broadinstitute.org/single_cell/study/SCP815/sensitive-spatial-genome-wide-expression-profiling-at-cellular-resolution#study-summary ) with preprocessed data available via the Squidpy package .

Techniques: Comparison, Single Cell