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sde software  (Riffyn Inc)

 
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    Riffyn Inc sde software
    Sde Software, supplied by Riffyn Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sde+software/sde+software/pmc07289030-70-0-0
    Average 90 stars, based on 1 article reviews
    sde software - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Software:

    Article Title: Evaluation of a novel cloud-based software platform for structured experiment design and linked data analytics
    Article Snippet: .. The Riffyn SDE software resolved this issue of human bias by enabling an objective, automated data calculation pipeline for all physiological parameters ( ). .. This pipeline utilized the automatically-generated Riffyn data tables in combination with a JMP software script, both of which are archived together with the experiment in Measure Mode.

    Article Title: Evaluation of a novel cloud-based software platform for structured experiment design and linked data analytics
    Article Snippet: .. The Riffyn SDE software automatically tracks changes to protocols and allows generation of a new version at any time. ..

    Article Title: Evaluation of a novel cloud-based software platform for structured experiment design and linked data analytics
    Article Snippet: .. Had all these experiments been recorded with the Riffyn SDE software, it would have been simple to correlate, for example, biomass yields or growth rates to the type of antifoam used across a large number of experiments. ..

    Article Title: Evaluation of a novel cloud-based software platform for structured experiment design and linked data analytics
    Article Snippet: .. Since the Riffyn SDE software unambiguously links any such modifications in the process design to the relevant data, their potential impacts on experimental outcomes remain unambiguously documented and can be retrospectively identified. ..

    other:

    Article Title: Digital publishing isn't enough: the case for ‘blueprints’ in scientific communication
    Article Snippet: Riffyn SDE also eliminated ambiguity in data analysis by allowing the researchers to pipe data from multiple experiments into objective, automated data calculation pipelines.



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    ( a ) All data on each experiment in <t>the</t> <t>Riffyn</t> <t>SDE</t> is extracted and flattened into a statistical data-frame compatible with nearly any modern analysis software (including R, JMP, SAS, Tableau, Minitab, etc.). This data-frame is composed of all variables defined on a Riffyn SDE process or experiment, including sample identifiers, parameter settings, start/stop times, dates, measurement data and units. The variables are presented as columns in the data-frame and grouped by step in the process. Multiple experiments executed on that same process (regardless of version) are stacked together such that data are aligned into common columns. If versions of a process diverge, gaps are left in the table where such variables are missing in the process. ( b ) Individual process data tables can be further combined into a “Master Process” data table composed of all data from all linked processes used in performing an experiment, including material preparation, equipment set-up, fermentation, and analytical chemistry processes. Data from these processes are joined together using the material flow graph defined by the Master Process in the Riffyn SDE, and the material identifiers automatically tracked by the Riffyn SDE.
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    ( a ) All data on each experiment in the Riffyn SDE is extracted and flattened into a statistical data-frame compatible with nearly any modern analysis software (including R, JMP, SAS, Tableau, Minitab, etc.). This data-frame is composed of all variables defined on a Riffyn SDE process or experiment, including sample identifiers, parameter settings, start/stop times, dates, measurement data and units. The variables are presented as columns in the data-frame and grouped by step in the process. Multiple experiments executed on that same process (regardless of version) are stacked together such that data are aligned into common columns. If versions of a process diverge, gaps are left in the table where such variables are missing in the process. ( b ) Individual process data tables can be further combined into a “Master Process” data table composed of all data from all linked processes used in performing an experiment, including material preparation, equipment set-up, fermentation, and analytical chemistry processes. Data from these processes are joined together using the material flow graph defined by the Master Process in the Riffyn SDE, and the material identifiers automatically tracked by the Riffyn SDE.

    Journal: Scientific Data

    Article Title: Evaluation of a novel cloud-based software platform for structured experiment design and linked data analytics

    doi: 10.1038/sdata.2018.195

    Figure Lengend Snippet: ( a ) All data on each experiment in the Riffyn SDE is extracted and flattened into a statistical data-frame compatible with nearly any modern analysis software (including R, JMP, SAS, Tableau, Minitab, etc.). This data-frame is composed of all variables defined on a Riffyn SDE process or experiment, including sample identifiers, parameter settings, start/stop times, dates, measurement data and units. The variables are presented as columns in the data-frame and grouped by step in the process. Multiple experiments executed on that same process (regardless of version) are stacked together such that data are aligned into common columns. If versions of a process diverge, gaps are left in the table where such variables are missing in the process. ( b ) Individual process data tables can be further combined into a “Master Process” data table composed of all data from all linked processes used in performing an experiment, including material preparation, equipment set-up, fermentation, and analytical chemistry processes. Data from these processes are joined together using the material flow graph defined by the Master Process in the Riffyn SDE, and the material identifiers automatically tracked by the Riffyn SDE.

    Article Snippet: The Riffyn SDE is a cloud-based software-as-a-service architecture hosted and operated by Riffyn in both multi-tenant and single-organization configurations on Amazon Web Services.

    Techniques: Software

    Data is entered into Riffyn via parsing of instrument files, querying of a database, or via manual data entry. All data is passed through a firewall and contextualized based on the Riffyn SDE process design. Any files parsed during the data upload are additionally stored in their native format. All contextualized data is exported as a flat csv file with all data, material information, and setpoints captured. This flat file is built with each variable as a column, and each row as an observation. Multiple tables are concatenated together across each version of the process to provide a comprehensive, cross-version table that captures all data across the development of the process.

    Journal: Scientific Data

    Article Title: Evaluation of a novel cloud-based software platform for structured experiment design and linked data analytics

    doi: 10.1038/sdata.2018.195

    Figure Lengend Snippet: Data is entered into Riffyn via parsing of instrument files, querying of a database, or via manual data entry. All data is passed through a firewall and contextualized based on the Riffyn SDE process design. Any files parsed during the data upload are additionally stored in their native format. All contextualized data is exported as a flat csv file with all data, material information, and setpoints captured. This flat file is built with each variable as a column, and each row as an observation. Multiple tables are concatenated together across each version of the process to provide a comprehensive, cross-version table that captures all data across the development of the process.

    Article Snippet: The Riffyn SDE is a cloud-based software-as-a-service architecture hosted and operated by Riffyn in both multi-tenant and single-organization configurations on Amazon Web Services.

    Techniques:

    ( a ) The ad hoc manual method typically used by experimenters requires visual inspection of the growth curves to exclude data points believed to be outside of exponential phase. After exclusion of such points, growth rates are calculated by regression of the remaining data points. This approach is subject to subjective interpretation and human bias. ( b ) The automatic growth rate calculation method implemented in scripts associated with the cultivation processes in the Riffyn SDE. An algorithm, rather than visual inspection, is used to identify values outside the exponential growth phase. Growth rates are then calculated using the remaining data points. Physiological parameters derived from such growth rates are objectively calculated, without human bias.

    Journal: Scientific Data

    Article Title: Evaluation of a novel cloud-based software platform for structured experiment design and linked data analytics

    doi: 10.1038/sdata.2018.195

    Figure Lengend Snippet: ( a ) The ad hoc manual method typically used by experimenters requires visual inspection of the growth curves to exclude data points believed to be outside of exponential phase. After exclusion of such points, growth rates are calculated by regression of the remaining data points. This approach is subject to subjective interpretation and human bias. ( b ) The automatic growth rate calculation method implemented in scripts associated with the cultivation processes in the Riffyn SDE. An algorithm, rather than visual inspection, is used to identify values outside the exponential growth phase. Growth rates are then calculated using the remaining data points. Physiological parameters derived from such growth rates are objectively calculated, without human bias.

    Article Snippet: The Riffyn SDE is a cloud-based software-as-a-service architecture hosted and operated by Riffyn in both multi-tenant and single-organization configurations on Amazon Web Services.

    Techniques: Derivative Assay

    ( a ) All data on each experiment in the Riffyn SDE is extracted and flattened into a statistical data-frame compatible with nearly any modern analysis software (including R, JMP, SAS, Tableau, Minitab, etc.). This data-frame is composed of all variables defined on a Riffyn SDE process or experiment, including sample identifiers, parameter settings, start/stop times, dates, measurement data and units. The variables are presented as columns in the data-frame and grouped by step in the process. Multiple experiments executed on that same process (regardless of version) are stacked together such that data are aligned into common columns. If versions of a process diverge, gaps are left in the table where such variables are missing in the process. ( b ) Individual process data tables can be further combined into a “Master Process” data table composed of all data from all linked processes used in performing an experiment, including material preparation, equipment set-up, fermentation, and analytical chemistry processes. Data from these processes are joined together using the material flow graph defined by the Master Process in the Riffyn SDE, and the material identifiers automatically tracked by the Riffyn SDE.

    Journal: Scientific Data

    Article Title: Evaluation of a novel cloud-based software platform for structured experiment design and linked data analytics

    doi: 10.1038/sdata.2018.195

    Figure Lengend Snippet: ( a ) All data on each experiment in the Riffyn SDE is extracted and flattened into a statistical data-frame compatible with nearly any modern analysis software (including R, JMP, SAS, Tableau, Minitab, etc.). This data-frame is composed of all variables defined on a Riffyn SDE process or experiment, including sample identifiers, parameter settings, start/stop times, dates, measurement data and units. The variables are presented as columns in the data-frame and grouped by step in the process. Multiple experiments executed on that same process (regardless of version) are stacked together such that data are aligned into common columns. If versions of a process diverge, gaps are left in the table where such variables are missing in the process. ( b ) Individual process data tables can be further combined into a “Master Process” data table composed of all data from all linked processes used in performing an experiment, including material preparation, equipment set-up, fermentation, and analytical chemistry processes. Data from these processes are joined together using the material flow graph defined by the Master Process in the Riffyn SDE, and the material identifiers automatically tracked by the Riffyn SDE.

    Article Snippet: To evaluate the ability of the Riffyn SDE software to capture and communicate complex protocols, record diverse data types, and enable data analysis, sharing, and reusability, we applied it to a study to quantify the aerobic growth characteristics of the industrially relevant yeast Ogataea polymorpha ( syn.

    Techniques: Software

    Data is entered into Riffyn via parsing of instrument files, querying of a database, or via manual data entry. All data is passed through a firewall and contextualized based on the Riffyn SDE process design. Any files parsed during the data upload are additionally stored in their native format. All contextualized data is exported as a flat csv file with all data, material information, and setpoints captured. This flat file is built with each variable as a column, and each row as an observation. Multiple tables are concatenated together across each version of the process to provide a comprehensive, cross-version table that captures all data across the development of the process.

    Journal: Scientific Data

    Article Title: Evaluation of a novel cloud-based software platform for structured experiment design and linked data analytics

    doi: 10.1038/sdata.2018.195

    Figure Lengend Snippet: Data is entered into Riffyn via parsing of instrument files, querying of a database, or via manual data entry. All data is passed through a firewall and contextualized based on the Riffyn SDE process design. Any files parsed during the data upload are additionally stored in their native format. All contextualized data is exported as a flat csv file with all data, material information, and setpoints captured. This flat file is built with each variable as a column, and each row as an observation. Multiple tables are concatenated together across each version of the process to provide a comprehensive, cross-version table that captures all data across the development of the process.

    Article Snippet: To evaluate the ability of the Riffyn SDE software to capture and communicate complex protocols, record diverse data types, and enable data analysis, sharing, and reusability, we applied it to a study to quantify the aerobic growth characteristics of the industrially relevant yeast Ogataea polymorpha ( syn.

    Techniques:

    ( a ) The ad hoc manual method typically used by experimenters requires visual inspection of the growth curves to exclude data points believed to be outside of exponential phase. After exclusion of such points, growth rates are calculated by regression of the remaining data points. This approach is subject to subjective interpretation and human bias. ( b ) The automatic growth rate calculation method implemented in scripts associated with the cultivation processes in the Riffyn SDE. An algorithm, rather than visual inspection, is used to identify values outside the exponential growth phase. Growth rates are then calculated using the remaining data points. Physiological parameters derived from such growth rates are objectively calculated, without human bias.

    Journal: Scientific Data

    Article Title: Evaluation of a novel cloud-based software platform for structured experiment design and linked data analytics

    doi: 10.1038/sdata.2018.195

    Figure Lengend Snippet: ( a ) The ad hoc manual method typically used by experimenters requires visual inspection of the growth curves to exclude data points believed to be outside of exponential phase. After exclusion of such points, growth rates are calculated by regression of the remaining data points. This approach is subject to subjective interpretation and human bias. ( b ) The automatic growth rate calculation method implemented in scripts associated with the cultivation processes in the Riffyn SDE. An algorithm, rather than visual inspection, is used to identify values outside the exponential growth phase. Growth rates are then calculated using the remaining data points. Physiological parameters derived from such growth rates are objectively calculated, without human bias.

    Article Snippet: To evaluate the ability of the Riffyn SDE software to capture and communicate complex protocols, record diverse data types, and enable data analysis, sharing, and reusability, we applied it to a study to quantify the aerobic growth characteristics of the industrially relevant yeast Ogataea polymorpha ( syn.

    Techniques: Derivative Assay