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SNVs called by QQ-SNV HS-P80 on H1N1 clinical sample (all paired-end reads)

Journal: BMC Bioinformatics

Article Title: QQ-SNV: single nucleotide variant detection at low frequency by comparing the quality quantiles

doi: 10.1186/s12859-015-0812-9

Figure Lengend Snippet: SNVs called by QQ-SNV HS-P80 on H1N1 clinical sample (all paired-end reads)

Article Snippet: Here we present QQ-SNV ( http://sourceforge.net/projects/qqsnv ), a logistic regression classifier model developed for the Illumina sequencing platforms that uses the quantiles of the quality scores, to distinguish true single nucleotide variants from sequencing errors based on the estimated SNV probability.

Techniques: