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qlik database management software  (Qlik Technologies Inc)
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The specific assay and tissue types for each dataset are indicated with network clustering based on hardware. See Supplementary Data and for the Matrix driving this visualization. Note the hardware used to analyze plant response to spaceflight often defines the types of tissue that are available and so these two variables are often linked. Purple color circles represent RNAseq analysis of wild-type Col-0 plants, shades of blue represent other WT ecotypes, the pink circle represents RNA-seq analysis performed on mutants. The size of circles is a qualitative representation of the amount of differentially expressed loci relative to other genetic varieties used during that study. Ecotypes: Col Columbia, Cvi Cape Verde Island, Ws Wassilewskija, Ler Landsberg, Col-0 + Ws mixed sample 80% Ws and 20% Col ecotypes. Genotypes: WT wild-type, arg1 altered response to gravity 1, hsfa2 heat shock transcription factor A2, atm1 ataxia-telangiectasia mutated 1 , phyD phytochrome D , Hardware: BRIC Biological Research in Canister, EMCS European Modular Cultivation System, VEGGIE Vegetable production system, SIMBOX SIMBOX incubator system, ABRS Advanced Biological Research System. An interactive version of this visualization is available <t>at:</t> <t>https://gilroy-qlik.botany.wisc.edu/a/sense/app/20aa802b-6915-4b1a-87bd-c029a1812e2b/sheet/6241e71a-a3c5-4c63-9210-e05c743699d7/state/analysis</t> .
Qlik Database Management Software, supplied by Qlik Technologies Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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software program qlik view  (QlikTech GmbH)
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The specific assay and tissue types for each dataset are indicated with network clustering based on hardware. See Supplementary Data and for the Matrix driving this visualization. Note the hardware used to analyze plant response to spaceflight often defines the types of tissue that are available and so these two variables are often linked. Purple color circles represent RNAseq analysis of wild-type Col-0 plants, shades of blue represent other WT ecotypes, the pink circle represents RNA-seq analysis performed on mutants. The size of circles is a qualitative representation of the amount of differentially expressed loci relative to other genetic varieties used during that study. Ecotypes: Col Columbia, Cvi Cape Verde Island, Ws Wassilewskija, Ler Landsberg, Col-0 + Ws mixed sample 80% Ws and 20% Col ecotypes. Genotypes: WT wild-type, arg1 altered response to gravity 1, hsfa2 heat shock transcription factor A2, atm1 ataxia-telangiectasia mutated 1 , phyD phytochrome D , Hardware: BRIC Biological Research in Canister, EMCS European Modular Cultivation System, VEGGIE Vegetable production system, SIMBOX SIMBOX incubator system, ABRS Advanced Biological Research System. An interactive version of this visualization is available <t>at:</t> <t>https://gilroy-qlik.botany.wisc.edu/a/sense/app/20aa802b-6915-4b1a-87bd-c029a1812e2b/sheet/6241e71a-a3c5-4c63-9210-e05c743699d7/state/analysis</t> .
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The specific assay and tissue types for each dataset are indicated with network clustering based on hardware. See Supplementary Data and for the Matrix driving this visualization. Note the hardware used to analyze plant response to spaceflight often defines the types of tissue that are available and so these two variables are often linked. Purple color circles represent RNAseq analysis of wild-type Col-0 plants, shades of blue represent other WT ecotypes, the pink circle represents RNA-seq analysis performed on mutants. The size of circles is a qualitative representation of the amount of differentially expressed loci relative to other genetic varieties used during that study. Ecotypes: Col Columbia, Cvi Cape Verde Island, Ws Wassilewskija, Ler Landsberg, Col-0 + Ws mixed sample 80% Ws and 20% Col ecotypes. Genotypes: WT wild-type, arg1 altered response to gravity 1, hsfa2 heat shock transcription factor A2, atm1 ataxia-telangiectasia mutated 1 , phyD phytochrome D , Hardware: BRIC Biological Research in Canister, EMCS European Modular Cultivation System, VEGGIE Vegetable production system, SIMBOX SIMBOX incubator system, ABRS Advanced Biological Research System. An interactive version of this visualization is available <t>at:</t> <t>https://gilroy-qlik.botany.wisc.edu/a/sense/app/20aa802b-6915-4b1a-87bd-c029a1812e2b/sheet/6241e71a-a3c5-4c63-9210-e05c743699d7/state/analysis</t> .
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qlik software  (QlikTech GmbH)
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The specific assay and tissue types for each dataset are indicated with network clustering based on hardware. See Supplementary Data and for the Matrix driving this visualization. Note the hardware used to analyze plant response to spaceflight often defines the types of tissue that are available and so these two variables are often linked. Purple color circles represent RNAseq analysis of wild-type Col-0 plants, shades of blue represent other WT ecotypes, the pink circle represents RNA-seq analysis performed on mutants. The size of circles is a qualitative representation of the amount of differentially expressed loci relative to other genetic varieties used during that study. Ecotypes: Col Columbia, Cvi Cape Verde Island, Ws Wassilewskija, Ler Landsberg, Col-0 + Ws mixed sample 80% Ws and 20% Col ecotypes. Genotypes: WT wild-type, arg1 altered response to gravity 1, hsfa2 heat shock transcription factor A2, atm1 ataxia-telangiectasia mutated 1 , phyD phytochrome D , Hardware: BRIC Biological Research in Canister, EMCS European Modular Cultivation System, VEGGIE Vegetable production system, SIMBOX SIMBOX incubator system, ABRS Advanced Biological Research System. An interactive version of this visualization is available <t>at:</t> <t>https://gilroy-qlik.botany.wisc.edu/a/sense/app/20aa802b-6915-4b1a-87bd-c029a1812e2b/sheet/6241e71a-a3c5-4c63-9210-e05c743699d7/state/analysis</t> .
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The specific assay and tissue types for each dataset are indicated with network clustering based on hardware. See Supplementary Data and for the Matrix driving this visualization. Note the hardware used to analyze plant response to spaceflight often defines the types of tissue that are available and so these two variables are often linked. Purple color circles represent RNAseq analysis of wild-type Col-0 plants, shades of blue represent other WT ecotypes, the pink circle represents RNA-seq analysis performed on mutants. The size of circles is a qualitative representation of the amount of differentially expressed loci relative to other genetic varieties used during that study. Ecotypes: Col Columbia, Cvi Cape Verde Island, Ws Wassilewskija, Ler Landsberg, Col-0 + Ws mixed sample 80% Ws and 20% Col ecotypes. Genotypes: WT wild-type, arg1 altered response to gravity 1, hsfa2 heat shock transcription factor A2, atm1 ataxia-telangiectasia mutated 1 , phyD phytochrome D , Hardware: BRIC Biological Research in Canister, EMCS European Modular Cultivation System, VEGGIE Vegetable production system, SIMBOX SIMBOX incubator system, ABRS Advanced Biological Research System. An interactive version of this visualization is available at: https://gilroy-qlik.botany.wisc.edu/a/sense/app/20aa802b-6915-4b1a-87bd-c029a1812e2b/sheet/6241e71a-a3c5-4c63-9210-e05c743699d7/state/analysis .

Journal: NPJ Microgravity

Article Title: Meta-analysis of the space flight and microgravity response of the Arabidopsis plant transcriptome

doi: 10.1038/s41526-023-00247-6

Figure Lengend Snippet: The specific assay and tissue types for each dataset are indicated with network clustering based on hardware. See Supplementary Data and for the Matrix driving this visualization. Note the hardware used to analyze plant response to spaceflight often defines the types of tissue that are available and so these two variables are often linked. Purple color circles represent RNAseq analysis of wild-type Col-0 plants, shades of blue represent other WT ecotypes, the pink circle represents RNA-seq analysis performed on mutants. The size of circles is a qualitative representation of the amount of differentially expressed loci relative to other genetic varieties used during that study. Ecotypes: Col Columbia, Cvi Cape Verde Island, Ws Wassilewskija, Ler Landsberg, Col-0 + Ws mixed sample 80% Ws and 20% Col ecotypes. Genotypes: WT wild-type, arg1 altered response to gravity 1, hsfa2 heat shock transcription factor A2, atm1 ataxia-telangiectasia mutated 1 , phyD phytochrome D , Hardware: BRIC Biological Research in Canister, EMCS European Modular Cultivation System, VEGGIE Vegetable production system, SIMBOX SIMBOX incubator system, ABRS Advanced Biological Research System. An interactive version of this visualization is available at: https://gilroy-qlik.botany.wisc.edu/a/sense/app/20aa802b-6915-4b1a-87bd-c029a1812e2b/sheet/6241e71a-a3c5-4c63-9210-e05c743699d7/state/analysis .

Article Snippet: The Matrix of this data is available as both Supplementary Data and as an interactive exploration environment developed in the Qlik database management software environment (Qlik Technologies Inc., King of Prussia, PA, USA) at https://gilroy-qlik.botany.wisc.edu/a/sense/app/20aa802b-6915-4b1a-87bd-c029a1812e2b .

Techniques: RNA Sequencing Assay