Journal: Frontiers in Plant Science

Article Title: Comparative plastome assembly of the yellow ironweed ( Verbesina alternifolia ) using Nanopore and Illumina reads

doi: 10.3389/fpls.2024.1429494

Figure Lengend Snippet: Detailed information on the plastomes used for the phylogenetic analysis in Figure 2 .

Article Snippet: A total of 28 chloroplast genomes of taxa closely related to Verbesina alternifolia (from the Heliantheae alliance ) were downloaded from GenBank and aligned with the two obtained plastomes (i.e., from Illumina and Nanopore sequencing).

Techniques:

Journal: Frontiers in Plant Science

Article Title: Comparative plastome assembly of the yellow ironweed ( Verbesina alternifolia ) using Nanopore and Illumina reads

doi: 10.3389/fpls.2024.1429494

Figure Lengend Snippet: Comparison of the mapping results for the short Illumina reads when using as reference the plastomes assembled with Illumina or Nanopore reads and two different mapping programs.

Article Snippet: A total of 28 chloroplast genomes of taxa closely related to Verbesina alternifolia (from the Heliantheae alliance ) were downloaded from GenBank and aligned with the two obtained plastomes (i.e., from Illumina and Nanopore sequencing).

Techniques: Comparison

Journal: Frontiers in Plant Science

Article Title: Comparative plastome assembly of the yellow ironweed ( Verbesina alternifolia ) using Nanopore and Illumina reads

doi: 10.3389/fpls.2024.1429494

Figure Lengend Snippet: ML phylogenetic tree including Verbesina plastomes assembled from Illumina and Nanopore reads, along with plastomes from members of the Heliantheae alliance available on the GenBank ( Table 1 ). The numbers above the branches are bootstrap support values. On the right part of the figure, the subtribal membership of the accessions is indicated. Colors are according to subtribes in the Heliantheae alliance .

Article Snippet: A total of 28 chloroplast genomes of taxa closely related to Verbesina alternifolia (from the Heliantheae alliance ) were downloaded from GenBank and aligned with the two obtained plastomes (i.e., from Illumina and Nanopore sequencing).

Techniques:

Journal: Mitochondrial DNA. Part B, Resources

Article Title: Sequencing of the complete plastome of the thermal adder’s-tongue fern, Ophioglossum thermale Kom. (Ophioglossaceae)

doi: 10.1080/23802359.2024.2387255

Figure Lengend Snippet: Complete plastome map of O. thermale , containing six tracks. From the center, the first track shows the dispersed repeats exhibiting direct (red) and palindromic (green) repeats. The second and third tracks show the long and short tandem repeats, respectively. The regional composition of the genome, containing a large single copy, a small single copy, and two inverted regions, are identified on the fourth track. The guanine-cytosine content along the genome is plotted in the fifth track. The genes are shown on the outer sixth track.

Article Snippet: The complete plastome sequence was submitted to the National Center for Biotechnology Information (NCBI) database under the accession number PP588400.

Techniques:

Journal: BMC Plant Biology

Article Title: Testing plastomes and nuclear ribosomal DNA sequences as the next-generation DNA barcodes for species identification and phylogenetic analysis in Acer

doi: 10.1186/s12870-024-05073-w

Figure Lengend Snippet: ML tree inferred from complete plastomes generated by this study. ML bootstrap support (BS) values are shown at nodes. Clades were set to polytomy when BS < 50%. Species with multiple individuals sampled were marked with dots at branch ends, with black indicating monophyly, while red indicating non-monophyly

Article Snippet: All complete plastomes and nrDNA sequences used in this study are available from the National Center for Biotechnology Information (NCBI) (see Table , ) and the Science Data Bank at 10.57760/sciencedb.18484.

Techniques: Generated