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The performance of the sample pretreatment method. (a) The numbers of identified bacterial peptides and other peptides (top), the numbers of identified species and species-level peptides (middle), and the bacterial proportions of peptide intensity and number over the host (bottom). ∗∗ p < 0.01, ∗∗∗ p < 0.001, two-sided unpaired t -test. (b) <t>Pearson</t> correlation <t>coefficient</t> of identified bacterial peptides between the methods with or without pretreatment. (c) Venn diagram of the identified bacteria taxa by the methods with or without pretreatment ( n = 3, three technical replicates, each circle represents a replicate).
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The performance of the sample pretreatment method. (a) The numbers of identified bacterial peptides and other peptides (top), the numbers of identified species and species-level peptides (middle), and the bacterial proportions of peptide intensity and number over the host (bottom). ∗∗ p < 0.01, ∗∗∗ p < 0.001, two-sided unpaired t -test. (b) <t>Pearson</t> correlation <t>coefficient</t> of identified bacterial peptides between the methods with or without pretreatment. (c) Venn diagram of the identified bacteria taxa by the methods with or without pretreatment ( n = 3, three technical replicates, each circle represents a replicate).
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The performance of the sample pretreatment method. (a) The numbers of identified bacterial peptides and other peptides (top), the numbers of identified species and species-level peptides (middle), and the bacterial proportions of peptide intensity and number over the host (bottom). ∗∗ p < 0.01, ∗∗∗ p < 0.001, two-sided unpaired t -test. (b) <t>Pearson</t> correlation <t>coefficient</t> of identified bacterial peptides between the methods with or without pretreatment. (c) Venn diagram of the identified bacteria taxa by the methods with or without pretreatment ( n = 3, three technical replicates, each circle represents a replicate).
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The performance of the sample pretreatment method. (a) The numbers of identified bacterial peptides and other peptides (top), the numbers of identified species and species-level peptides (middle), and the bacterial proportions of peptide intensity and number over the host (bottom). ∗∗ p < 0.01, ∗∗∗ p < 0.001, two-sided unpaired t -test. (b) <t>Pearson</t> correlation <t>coefficient</t> of identified bacterial peptides between the methods with or without pretreatment. (c) Venn diagram of the identified bacteria taxa by the methods with or without pretreatment ( n = 3, three technical replicates, each circle represents a replicate).
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The performance of the sample pretreatment method. (a) The numbers of identified bacterial peptides and other peptides (top), the numbers of identified species and species-level peptides (middle), and the bacterial proportions of peptide intensity and number over the host (bottom). ∗∗ p < 0.01, ∗∗∗ p < 0.001, two-sided unpaired t -test. (b) Pearson correlation coefficient of identified bacterial peptides between the methods with or without pretreatment. (c) Venn diagram of the identified bacteria taxa by the methods with or without pretreatment ( n = 3, three technical replicates, each circle represents a replicate).

Journal: Research

Article Title: In-Depth Metaproteomics Analysis of Oral Microbiome for Lung Cancer

doi: 10.34133/2022/9781578

Figure Lengend Snippet: The performance of the sample pretreatment method. (a) The numbers of identified bacterial peptides and other peptides (top), the numbers of identified species and species-level peptides (middle), and the bacterial proportions of peptide intensity and number over the host (bottom). ∗∗ p < 0.01, ∗∗∗ p < 0.001, two-sided unpaired t -test. (b) Pearson correlation coefficient of identified bacterial peptides between the methods with or without pretreatment. (c) Venn diagram of the identified bacteria taxa by the methods with or without pretreatment ( n = 3, three technical replicates, each circle represents a replicate).

Article Snippet: RStudio was used for Pearson correlation coefficient plot, volcano plots, Circos plots, Venn diagrams, and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment plot generation.

Techniques: Bacteria