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Population structure and ΔK plot estimated by STRUCTURE of 210 Stemphylium vesicarium isolates using nine <t>simple</t> <t>sequence</t> <t>repeat</t> loci. Each color denotes a population determined by the analysis, divided into K colors, where K is the number of clusters assumed. Each isolate is represented by a bar and the height of each column represents the probability of membership to each cluster according to (a) year of sampling, K = 3 (b) geographic region across years, K = 2 (c) ΔK plot at temporal scale; and (d) ΔK plot at spatial scale.
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Population structure and ΔK plot estimated by STRUCTURE of 210 Stemphylium vesicarium isolates using nine <t>simple</t> <t>sequence</t> <t>repeat</t> loci. Each color denotes a population determined by the analysis, divided into K colors, where K is the number of clusters assumed. Each isolate is represented by a bar and the height of each column represents the probability of membership to each cluster according to (a) year of sampling, K = 3 (b) geographic region across years, K = 2 (c) ΔK plot at temporal scale; and (d) ΔK plot at spatial scale.
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Population structure and ΔK plot estimated by STRUCTURE of 210 Stemphylium vesicarium isolates using nine <t>simple</t> <t>sequence</t> <t>repeat</t> loci. Each color denotes a population determined by the analysis, divided into K colors, where K is the number of clusters assumed. Each isolate is represented by a bar and the height of each column represents the probability of membership to each cluster according to (a) year of sampling, K = 3 (b) geographic region across years, K = 2 (c) ΔK plot at temporal scale; and (d) ΔK plot at spatial scale.
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Population structure and ΔK plot estimated by STRUCTURE of 210 Stemphylium vesicarium isolates using nine simple sequence repeat loci. Each color denotes a population determined by the analysis, divided into K colors, where K is the number of clusters assumed. Each isolate is represented by a bar and the height of each column represents the probability of membership to each cluster according to (a) year of sampling, K = 3 (b) geographic region across years, K = 2 (c) ΔK plot at temporal scale; and (d) ΔK plot at spatial scale.

Journal: Frontiers in Microbiology

Article Title: Spatiotemporal analysis of the structure and genetic diversity of Stemphylium vesicarium populations in New York onion fields

doi: 10.3389/fmicb.2025.1666712

Figure Lengend Snippet: Population structure and ΔK plot estimated by STRUCTURE of 210 Stemphylium vesicarium isolates using nine simple sequence repeat loci. Each color denotes a population determined by the analysis, divided into K colors, where K is the number of clusters assumed. Each isolate is represented by a bar and the height of each column represents the probability of membership to each cluster according to (a) year of sampling, K = 3 (b) geographic region across years, K = 2 (c) ΔK plot at temporal scale; and (d) ΔK plot at spatial scale.

Article Snippet: 7.1.7; Biomatters Ltd.) using the Microsatellite 1.4.7 plugin ( ).

Techniques: Sequencing, Sampling

Discriminant analysis of principal components (DAPC) using nine simple sequence repeats to characterize Stemphylium vesicarium populations from onion fields across New York, U.S.A. (a,b) Genetic differentiation among (a) temporal populations (b) spatial populations by DAPC. Each population are displayed by different colors. Dots represent individual isolate. (c,d) Density plot of individuals along the first discriminant function from the DAPC for (c) temporal populations (d) spatial populations.

Journal: Frontiers in Microbiology

Article Title: Spatiotemporal analysis of the structure and genetic diversity of Stemphylium vesicarium populations in New York onion fields

doi: 10.3389/fmicb.2025.1666712

Figure Lengend Snippet: Discriminant analysis of principal components (DAPC) using nine simple sequence repeats to characterize Stemphylium vesicarium populations from onion fields across New York, U.S.A. (a,b) Genetic differentiation among (a) temporal populations (b) spatial populations by DAPC. Each population are displayed by different colors. Dots represent individual isolate. (c,d) Density plot of individuals along the first discriminant function from the DAPC for (c) temporal populations (d) spatial populations.

Article Snippet: 7.1.7; Biomatters Ltd.) using the Microsatellite 1.4.7 plugin ( ).

Techniques: Sequencing