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pre compiled matlab mex files  (MathWorks Inc)


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    MathWorks Inc pre compiled matlab mex files
    Pre Compiled Matlab Mex Files, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 95/100, based on 169 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/matlab+mex/MATLAB+Coder/10__1063_slash_5__0273041-211-39-40
    Average 95 stars, based on 169 article reviews
    pre compiled matlab mex files - by Bioz Stars, 2026-09
    95/100 stars

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    other:

    Article Title: Effective Sampling: Fast Segmentation Using Robust Geometric Model Fitting
    Article Snippet: Moreover, on average, the computation time of the proposed method is approximately 4 times less than that of QP-MF and twice that of RCMSA when its computational bottlenecks are implemented using C (MATLAB MEX), whereas our method is implemented using a simple MATLAB script.

    Article Title: Alpha Shapes Applied to Molecular Shape Characterization Exhibit Novel Properties Compared to Established Shape Descriptors
    Article Snippet: In our implementation (MATLAB mex) of the original algorithm37 a single EMD comparison in our configuration takes 1.41 s. Our current implementation of the source C++ code,48 as a loadable library in MATLAB for Windows, has reduced this to 0.005 s per comparison.

    Article Title: Infectio: a Generic Framework for Computational Simulation of Virus Transmission between Cells
    Article Snippet: Performance-critical parts were implemented as cross-platform C code, which is integrated using the MATLAB MEX technology.

    Article Title: Near real-time robust non-rigid registration of volumetric ultrasound images for neurosurgery.
    Article Snippet: A cal and dia Un concor Abstract—Ultrasound images are acquired before and after the resection of brain tumors to help the surgeon to localize the tumor and its extent and to minimize the amount of residual tumor after the resection.. Because the brain undergoes large deformation between these two acquisitions, deformable image-based registration of these data sets is of substantial clinical importance.. In this work, we present an algorithm for non-rigid registration of ultrasound images (RESOUND) that models the deformation with free-form cubic B-splines.

    Article Title: MCR toolkit: A GPU-based toolkit for multi-channel reconstruction of preclinical and clinical x-ray CT data
    Article Snippet: MATLAB MEX , Primary interface for reconstruction operators and denoising algorithms , Unified iterative reconstruction for SE, ME, TR, and METR CT , Primary interface with provided scripts for compilation, unit testing, and demos.



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    MathWorks Inc pre compiled matlab mex files
    Pre Compiled Matlab Mex Files, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    a – b , run times of Tiff readers and writers <t>for</t> <t>libtiff</t> <t>(MATLAB),</t> tifffile (Python), and Cpp-Tiff versus the number of frames. c – d , run times of Zarr readers and writers, comparing the MATLAB interface of Zarr, native Zarr (Python), and Cpp-Zarr across different numbers of frames. In panels a-d , all images are in unit16 format with a frame size of 512 × 1,800 (xy), and the benchmark results are the absolute run times for Fig. . e – f , run times of Tiff readers and writers for libtiff (MATLAB) and Cpp-Tiff versus the number of CPU cores for a unit16 image stack of size 512 × 1,800 × 20,000. g – h , run times of Zarr readers and writers for the MATLAB interface of Zarr, and Cpp-Zarr versus the number of CPU cores for a unit16 image stack of size 512 × 1,800 × 20,000. i – k , data size and read/write times versus compression level for lz4 and zstd compressors for a uint16 image stack of size 512 × 1,800 × 30,000. The benchmarks were run ten times independently on a 24-core CPU computing node (dual Intel Xeon Gold 6146 CPUs). All 24 cores were allocated for panels a – d and i – k , and varying numbers of CPU cores were allocated for panels e – h . Data are shown as mean ± s.d. in panels a – h and j – k .
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    a – b , run times of Tiff readers and writers <t>for</t> <t>libtiff</t> <t>(MATLAB),</t> tifffile (Python), and Cpp-Tiff versus the number of frames. c – d , run times of Zarr readers and writers, comparing the MATLAB interface of Zarr, native Zarr (Python), and Cpp-Zarr across different numbers of frames. In panels a-d , all images are in unit16 format with a frame size of 512 × 1,800 (xy), and the benchmark results are the absolute run times for Fig. . e – f , run times of Tiff readers and writers for libtiff (MATLAB) and Cpp-Tiff versus the number of CPU cores for a unit16 image stack of size 512 × 1,800 × 20,000. g – h , run times of Zarr readers and writers for the MATLAB interface of Zarr, and Cpp-Zarr versus the number of CPU cores for a unit16 image stack of size 512 × 1,800 × 20,000. i – k , data size and read/write times versus compression level for lz4 and zstd compressors for a uint16 image stack of size 512 × 1,800 × 30,000. The benchmarks were run ten times independently on a 24-core CPU computing node (dual Intel Xeon Gold 6146 CPUs). All 24 cores were allocated for panels a – d and i – k , and varying numbers of CPU cores were allocated for panels e – h . Data are shown as mean ± s.d. in panels a – h and j – k .
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    a – b , run times of Tiff readers and writers <t>for</t> <t>libtiff</t> <t>(MATLAB),</t> tifffile (Python), and Cpp-Tiff versus the number of frames. c – d , run times of Zarr readers and writers, comparing the MATLAB interface of Zarr, native Zarr (Python), and Cpp-Zarr across different numbers of frames. In panels a-d , all images are in unit16 format with a frame size of 512 × 1,800 (xy), and the benchmark results are the absolute run times for Fig. . e – f , run times of Tiff readers and writers for libtiff (MATLAB) and Cpp-Tiff versus the number of CPU cores for a unit16 image stack of size 512 × 1,800 × 20,000. g – h , run times of Zarr readers and writers for the MATLAB interface of Zarr, and Cpp-Zarr versus the number of CPU cores for a unit16 image stack of size 512 × 1,800 × 20,000. i – k , data size and read/write times versus compression level for lz4 and zstd compressors for a uint16 image stack of size 512 × 1,800 × 30,000. The benchmarks were run ten times independently on a 24-core CPU computing node (dual Intel Xeon Gold 6146 CPUs). All 24 cores were allocated for panels a – d and i – k , and varying numbers of CPU cores were allocated for panels e – h . Data are shown as mean ± s.d. in panels a – h and j – k .
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    c/c++-based matlab executable (mex) approach  (MathWorks Inc)
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    a – b , run times of Tiff readers and writers <t>for</t> <t>libtiff</t> <t>(MATLAB),</t> tifffile (Python), and Cpp-Tiff versus the number of frames. c – d , run times of Zarr readers and writers, comparing the MATLAB interface of Zarr, native Zarr (Python), and Cpp-Zarr across different numbers of frames. In panels a-d , all images are in unit16 format with a frame size of 512 × 1,800 (xy), and the benchmark results are the absolute run times for Fig. . e – f , run times of Tiff readers and writers for libtiff (MATLAB) and Cpp-Tiff versus the number of CPU cores for a unit16 image stack of size 512 × 1,800 × 20,000. g – h , run times of Zarr readers and writers for the MATLAB interface of Zarr, and Cpp-Zarr versus the number of CPU cores for a unit16 image stack of size 512 × 1,800 × 20,000. i – k , data size and read/write times versus compression level for lz4 and zstd compressors for a uint16 image stack of size 512 × 1,800 × 30,000. The benchmarks were run ten times independently on a 24-core CPU computing node (dual Intel Xeon Gold 6146 CPUs). All 24 cores were allocated for panels a – d and i – k , and varying numbers of CPU cores were allocated for panels e – h . Data are shown as mean ± s.d. in panels a – h and j – k .
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    a – b , run times of Tiff readers and writers <t>for</t> <t>libtiff</t> <t>(MATLAB),</t> tifffile (Python), and Cpp-Tiff versus the number of frames. c – d , run times of Zarr readers and writers, comparing the MATLAB interface of Zarr, native Zarr (Python), and Cpp-Zarr across different numbers of frames. In panels a-d , all images are in unit16 format with a frame size of 512 × 1,800 (xy), and the benchmark results are the absolute run times for Fig. . e – f , run times of Tiff readers and writers for libtiff (MATLAB) and Cpp-Tiff versus the number of CPU cores for a unit16 image stack of size 512 × 1,800 × 20,000. g – h , run times of Zarr readers and writers for the MATLAB interface of Zarr, and Cpp-Zarr versus the number of CPU cores for a unit16 image stack of size 512 × 1,800 × 20,000. i – k , data size and read/write times versus compression level for lz4 and zstd compressors for a uint16 image stack of size 512 × 1,800 × 30,000. The benchmarks were run ten times independently on a 24-core CPU computing node (dual Intel Xeon Gold 6146 CPUs). All 24 cores were allocated for panels a – d and i – k , and varying numbers of CPU cores were allocated for panels e – h . Data are shown as mean ± s.d. in panels a – h and j – k .
    Slamicp Library Matlab Wrappers With Precompiled Mex Files, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Image Search Results


    a – b , run times of Tiff readers and writers for libtiff (MATLAB), tifffile (Python), and Cpp-Tiff versus the number of frames. c – d , run times of Zarr readers and writers, comparing the MATLAB interface of Zarr, native Zarr (Python), and Cpp-Zarr across different numbers of frames. In panels a-d , all images are in unit16 format with a frame size of 512 × 1,800 (xy), and the benchmark results are the absolute run times for Fig. . e – f , run times of Tiff readers and writers for libtiff (MATLAB) and Cpp-Tiff versus the number of CPU cores for a unit16 image stack of size 512 × 1,800 × 20,000. g – h , run times of Zarr readers and writers for the MATLAB interface of Zarr, and Cpp-Zarr versus the number of CPU cores for a unit16 image stack of size 512 × 1,800 × 20,000. i – k , data size and read/write times versus compression level for lz4 and zstd compressors for a uint16 image stack of size 512 × 1,800 × 30,000. The benchmarks were run ten times independently on a 24-core CPU computing node (dual Intel Xeon Gold 6146 CPUs). All 24 cores were allocated for panels a – d and i – k , and varying numbers of CPU cores were allocated for panels e – h . Data are shown as mean ± s.d. in panels a – h and j – k .

    Journal: Nature Methods

    Article Title: Image processing tools for petabyte-scale light sheet microscopy data

    doi: 10.1038/s41592-024-02475-4

    Figure Lengend Snippet: a – b , run times of Tiff readers and writers for libtiff (MATLAB), tifffile (Python), and Cpp-Tiff versus the number of frames. c – d , run times of Zarr readers and writers, comparing the MATLAB interface of Zarr, native Zarr (Python), and Cpp-Zarr across different numbers of frames. In panels a-d , all images are in unit16 format with a frame size of 512 × 1,800 (xy), and the benchmark results are the absolute run times for Fig. . e – f , run times of Tiff readers and writers for libtiff (MATLAB) and Cpp-Tiff versus the number of CPU cores for a unit16 image stack of size 512 × 1,800 × 20,000. g – h , run times of Zarr readers and writers for the MATLAB interface of Zarr, and Cpp-Zarr versus the number of CPU cores for a unit16 image stack of size 512 × 1,800 × 20,000. i – k , data size and read/write times versus compression level for lz4 and zstd compressors for a uint16 image stack of size 512 × 1,800 × 30,000. The benchmarks were run ten times independently on a 24-core CPU computing node (dual Intel Xeon Gold 6146 CPUs). All 24 cores were allocated for panels a – d and i – k , and varying numbers of CPU cores were allocated for panels e – h . Data are shown as mean ± s.d. in panels a – h and j – k .

    Article Snippet: Our Tiff reader/writer leverages the capabilities of the libtiff library in C++ with the MATLAB MEX interface.

    Techniques:

    a , Performance gains of our Cpp-Tiff reader versus the conventional Tiff reader in MATLAB and tifffile reader in Python versus the number of frames in 3D stacks. b , Performance gains of Cpp-Tiff writer versus the conventional Tiff writer in MATLAB and the tifffile writer in Python versus the number of frames in 3D stacks. c , Performance gains of our Cpp-Zarr reader versus the conventional Zarr reader (MATLAB interface of Zarr) and native Zarr in Python versus the number of frames in 3D stacks. d , Performance gains of Cpp-Zarr writers versus the conventional Zarr writer (MATLAB interface of Zarr) and native Zarr in Python versus the number of frames in 3D stacks. The images have a uint16 frame size of 512 × 1,800 ( xy ) in all cases. The benchmarks were run independently ten times on a 24-core CPU computing node (dual Intel Xeon Gold 6146 CPUs). Data are shown as the mean ± s.d.

    Journal: Nature Methods

    Article Title: Image processing tools for petabyte-scale light sheet microscopy data

    doi: 10.1038/s41592-024-02475-4

    Figure Lengend Snippet: a , Performance gains of our Cpp-Tiff reader versus the conventional Tiff reader in MATLAB and tifffile reader in Python versus the number of frames in 3D stacks. b , Performance gains of Cpp-Tiff writer versus the conventional Tiff writer in MATLAB and the tifffile writer in Python versus the number of frames in 3D stacks. c , Performance gains of our Cpp-Zarr reader versus the conventional Zarr reader (MATLAB interface of Zarr) and native Zarr in Python versus the number of frames in 3D stacks. d , Performance gains of Cpp-Zarr writers versus the conventional Zarr writer (MATLAB interface of Zarr) and native Zarr in Python versus the number of frames in 3D stacks. The images have a uint16 frame size of 512 × 1,800 ( xy ) in all cases. The benchmarks were run independently ten times on a 24-core CPU computing node (dual Intel Xeon Gold 6146 CPUs). Data are shown as the mean ± s.d.

    Article Snippet: Our Tiff reader/writer leverages the capabilities of the libtiff library in C++ with the MATLAB MEX interface.

    Techniques: