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clustal w multiple alignment program  (Bioedit Company)

 
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    Bioedit Company clustal w multiple alignment program
    Clustal W Multiple Alignment Program, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/clustal+w+program/alignment+clustalw+multiple+tool/pm41595434-84-1-7
    Average 86 stars, based on 1 article reviews
    clustal w multiple alignment program - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    Sequencing:

    Article Title: Occurrence and characterization of Proteus mirabilis from infected farmed African catfish in Ogun State, Nigeria.
    Article Snippet: .. Ten high-quality 16 S rRNA gene sequences were selected from the NCBI GenBank database and subjected to multiple sequence alignment using the Clustal W program within BioEdit software [16, 17]. ..

    Article Title: A new point mutation in the HC-Pro of potato virus Y is involved in tobacco vein necrosis
    Article Snippet: .. Amino acid sequences were then aligned and compared with the sequence of PVY-12 with the Clustal W program [ ], using default parameters on the BioEdit software package [ ]. ..

    Article Title: Identification of a Novel Haloarchaeal Species Halorubellus amylolyticus sp. nov., Isolated from Salt Crystals of Salted Seaweed Knots and Genomic Insights into Genus Halorubellus
    Article Snippet: .. Multiple sequence alignments were performed using the CLUSTAL W program ( ) integrated into the BioEdit software ( ). ..

    Software:

    Article Title: Isolation and characterization of a novel lytic phage K14-2 infecting diverse species of the genus Klebsiella and Raoultella
    Article Snippet: .. These sequences were then aligned using the CLUSTAL W program in BioEdit v5.0.9 software. ..

    other:

    Article Title: Nitrospirillum viridazoti sp. nov., an Efficient Nitrogen-Fixing Species Isolated from Grasses.
    Article Snippet: A group of Gram-negative plant-associated diazotrophic bacteria belonging to the genus Nitrospirillum was investigated, including both previously characterized and newly isolated strains from diverse regions and biomes, predominantly in Brazil.. Phylogenetic analysis of 16S rRNA and recA genes revealed the formation of a distinct clade consisting of thirteen strains, separate from the formally recognized species N. amazonense (the closest species) and N. iridis.. Comprehensive taxonomic analyses using the whole genomes of four strains (BR 11140T = AM 18T = Y-2T = DSM 2788T = ATCC 35120T, BR 11142T = AM 14T = Y-1T = DSM 2787T = ATCC 35119T, BR 11145 = CBAmC, and BR 12005) supported the division of these strains into two species: N. amazonense (BR 11142 T and BR 12005) and a newly proposed species (BR 11140 T and BR 11145), distinct from N. iridis.

    Polymerase Chain Reaction:

    Article Title: Hydrogen production in the Chlorella sp. DT mutants carrying heterologous electron donor ferredoxin 1 of Chlamydomonas reinhardtii
    Article Snippet: .. The sequences of the PCR product from the p121-crfd1 plasmid were aligned with crfd1 nucleotide sequences using the Clustal W program (BioEdit). .. The sequence of the crfd1 insert from p121crfd1 was compared with the crfd1 coding region in the database with the Clustal W program (BioEdit) (Fig. S3).

    Plasmid Preparation:

    Article Title: Hydrogen production in the Chlorella sp. DT mutants carrying heterologous electron donor ferredoxin 1 of Chlamydomonas reinhardtii
    Article Snippet: .. The sequences of the PCR product from the p121-crfd1 plasmid were aligned with crfd1 nucleotide sequences using the Clustal W program (BioEdit). .. The sequence of the crfd1 insert from p121crfd1 was compared with the crfd1 coding region in the database with the Clustal W program (BioEdit) (Fig. S3).



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    Fig. 1. Molecular characterization of CPB proteasome subunit beta type-5 (CPB-PSMB5). (A) Prediction of signature motifs and alignment of nucleotide sequences of CPB-PSMB5 with other four well-known insect and potato plant PSMB5. Sequence alignment used Clustal W program of <t>MegAlign</t> (DNASTAR, Version 7.0). Species acronyms and GenBank accession numbers of PSMB5 amino acids are listed in Table S1. (B) Predicted three-dimensional structure of CPB-PSMB5 showing key structural domains. Alpha-helices and beta-sheets are depicted in the model as cyan, and yellow, respectively. The beta subunit interaction site domain is highlighted in brown. Green regions represent the active site. (C) Phylogenetic tree of CPB-PSMB5 (highlighted in a red rounded rectangle) and other PSMB5 sequences from different insect orders. The tree was generated with MEGA 7 using Neighbor-joining method. Bootstrap values on nodes were obtained with 1000 replicates. GenBank accession numbers are provided in Supplementary Table S1. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
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    Fig. 1. Molecular characterization of CPB proteasome subunit beta type-5 (CPB-PSMB5). (A) Prediction of signature motifs and alignment of nucleotide sequences of CPB-PSMB5 with other four well-known insect and potato plant PSMB5. Sequence alignment used Clustal W program of <t>MegAlign</t> (DNASTAR, Version 7.0). Species acronyms and GenBank accession numbers of PSMB5 amino acids are listed in Table S1. (B) Predicted three-dimensional structure of CPB-PSMB5 showing key structural domains. Alpha-helices and beta-sheets are depicted in the model as cyan, and yellow, respectively. The beta subunit interaction site domain is highlighted in brown. Green regions represent the active site. (C) Phylogenetic tree of CPB-PSMB5 (highlighted in a red rounded rectangle) and other PSMB5 sequences from different insect orders. The tree was generated with MEGA 7 using Neighbor-joining method. Bootstrap values on nodes were obtained with 1000 replicates. GenBank accession numbers are provided in Supplementary Table S1. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
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    Fig. 1. Molecular characterization of CPB proteasome subunit beta type-5 (CPB-PSMB5). (A) Prediction of signature motifs and alignment of nucleotide sequences of CPB-PSMB5 with other four well-known insect and potato plant PSMB5. Sequence alignment used Clustal W program of <t>MegAlign</t> (DNASTAR, Version 7.0). Species acronyms and GenBank accession numbers of PSMB5 amino acids are listed in Table S1. (B) Predicted three-dimensional structure of CPB-PSMB5 showing key structural domains. Alpha-helices and beta-sheets are depicted in the model as cyan, and yellow, respectively. The beta subunit interaction site domain is highlighted in brown. Green regions represent the active site. (C) Phylogenetic tree of CPB-PSMB5 (highlighted in a red rounded rectangle) and other PSMB5 sequences from different insect orders. The tree was generated with MEGA 7 using Neighbor-joining method. Bootstrap values on nodes were obtained with 1000 replicates. GenBank accession numbers are provided in Supplementary Table S1. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
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    Fig. 1. Molecular characterization of CPB proteasome subunit beta type-5 (CPB-PSMB5). (A) Prediction of signature motifs and alignment of nucleotide sequences of CPB-PSMB5 with other four well-known insect and potato plant PSMB5. Sequence alignment used Clustal W program of MegAlign (DNASTAR, Version 7.0). Species acronyms and GenBank accession numbers of PSMB5 amino acids are listed in Table S1. (B) Predicted three-dimensional structure of CPB-PSMB5 showing key structural domains. Alpha-helices and beta-sheets are depicted in the model as cyan, and yellow, respectively. The beta subunit interaction site domain is highlighted in brown. Green regions represent the active site. (C) Phylogenetic tree of CPB-PSMB5 (highlighted in a red rounded rectangle) and other PSMB5 sequences from different insect orders. The tree was generated with MEGA 7 using Neighbor-joining method. Bootstrap values on nodes were obtained with 1000 replicates. GenBank accession numbers are provided in Supplementary Table S1. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)

    Journal: Pesticide Biochemistry and Physiology

    Article Title: Development and efficacy of dsRNA pesticides targeting the Colorado potato beetle with enhanced stability via chitosan formulations

    doi: 10.1016/j.pestbp.2025.106606

    Figure Lengend Snippet: Fig. 1. Molecular characterization of CPB proteasome subunit beta type-5 (CPB-PSMB5). (A) Prediction of signature motifs and alignment of nucleotide sequences of CPB-PSMB5 with other four well-known insect and potato plant PSMB5. Sequence alignment used Clustal W program of MegAlign (DNASTAR, Version 7.0). Species acronyms and GenBank accession numbers of PSMB5 amino acids are listed in Table S1. (B) Predicted three-dimensional structure of CPB-PSMB5 showing key structural domains. Alpha-helices and beta-sheets are depicted in the model as cyan, and yellow, respectively. The beta subunit interaction site domain is highlighted in brown. Green regions represent the active site. (C) Phylogenetic tree of CPB-PSMB5 (highlighted in a red rounded rectangle) and other PSMB5 sequences from different insect orders. The tree was generated with MEGA 7 using Neighbor-joining method. Bootstrap values on nodes were obtained with 1000 replicates. GenBank accession numbers are provided in Supplementary Table S1. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)

    Article Snippet: Sequence alignment was performed using the Clustal W program within MegAlign (DNASTAR, Version 7.0).

    Techniques: Sequencing, Generated