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Journal: Cell reports

Article Title: Ultraflexible electrodes for recording neural activity in the mouse spinal cord during motor behavior

doi: 10.1016/j.celrep.2024.114199

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: We evaluated the neuronal properties of 561 putative single units by calculating first-level metrics, including trough-to-peak and rise time of autocorrelograms ACGs τ rise , using MATLAB-based framework CellExplorer ( – ).

Techniques: Software

CELLmicrocosmos CellExplorer with the PathwayIntegration: The network layout protocol after associating a cell model with a metabolic network shows also the used version of Java as well as Java3D.

Journal: Journal of Integrative Bioinformatics

Article Title: The CELLmicrocosmos Tools: A Small History of Java-Based Cell and Membrane Modelling Open Source Software Development

doi: 10.1515/jib-2019-0057

Figure Lengend Snippet: CELLmicrocosmos CellExplorer with the PathwayIntegration: The network layout protocol after associating a cell model with a metabolic network shows also the used version of Java as well as Java3D.

Article Snippet: Here, the focus is laid on the software development part, more precisely on the two major Integrative Bioinformatics tools which were being developed in the context of Cm and which are still being maintained, used and cited in the current time: the Java-based CELLmicrocosmos CellExplorer with the PathwayIntegration (CmPI) and the CELLmicrocosmos MembraneEditor (CmME).

Techniques:

CELLmicrocosmos CellExplorer with the PathwayIntegration/Hybrid-dimensional visualization (a detail of ): Left – 3D visualization of the mitochondrion in the center associated with the KEGG citrate cycle; Right – 2D visualization of the same KEGG citrate cycle.

Journal: Journal of Integrative Bioinformatics

Article Title: The CELLmicrocosmos Tools: A Small History of Java-Based Cell and Membrane Modelling Open Source Software Development

doi: 10.1515/jib-2019-0057

Figure Lengend Snippet: CELLmicrocosmos CellExplorer with the PathwayIntegration/Hybrid-dimensional visualization (a detail of ): Left – 3D visualization of the mitochondrion in the center associated with the KEGG citrate cycle; Right – 2D visualization of the same KEGG citrate cycle.

Article Snippet: Here, the focus is laid on the software development part, more precisely on the two major Integrative Bioinformatics tools which were being developed in the context of Cm and which are still being maintained, used and cited in the current time: the Java-based CELLmicrocosmos CellExplorer with the PathwayIntegration (CmPI) and the CELLmicrocosmos MembraneEditor (CmME).

Techniques:

CELLmicrocosmos CellExplorer with the PathwayIntegration: Bottom Right – PathwayIntegration Window; Left – CellEditor window; Top Center – 3D view of the cell; Top Right – the metabolic pathway as downloaded from KEGG.

Journal: Journal of Integrative Bioinformatics

Article Title: The CELLmicrocosmos Tools: A Small History of Java-Based Cell and Membrane Modelling Open Source Software Development

doi: 10.1515/jib-2019-0057

Figure Lengend Snippet: CELLmicrocosmos CellExplorer with the PathwayIntegration: Bottom Right – PathwayIntegration Window; Left – CellEditor window; Top Center – 3D view of the cell; Top Right – the metabolic pathway as downloaded from KEGG.

Article Snippet: Here, the focus is laid on the software development part, more precisely on the two major Integrative Bioinformatics tools which were being developed in the context of Cm and which are still being maintained, used and cited in the current time: the Java-based CELLmicrocosmos CellExplorer with the PathwayIntegration (CmPI) and the CELLmicrocosmos MembraneEditor (CmME).

Techniques: