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The 16S rRNA <t>sequence</t> (V1 to V5)-based taxonomic tree corresponding to NCBI taxonomy database in clinically healthy birds representing studied farms. The size/radius of the node corresponds to the number of hits for each taxonomic node. Black color of radius corresponds to CHS; FRS as green, and OHS as blue. Full color version available online.
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The 16S rRNA sequence (V1 to V5)-based taxonomic tree corresponding to NCBI taxonomy database in clinically healthy birds representing studied farms. The size/radius of the node corresponds to the number of hits for each taxonomic node. Black color of radius corresponds to CHS; FRS as green, and OHS as blue. Full color version available online.

Journal: Poultry Science

Article Title: Microbial communities present in the lower respiratory tract of clinically healthy birds in Pakistan

doi: 10.3382/ps/pev010

Figure Lengend Snippet: The 16S rRNA sequence (V1 to V5)-based taxonomic tree corresponding to NCBI taxonomy database in clinically healthy birds representing studied farms. The size/radius of the node corresponds to the number of hits for each taxonomic node. Black color of radius corresponds to CHS; FRS as green, and OHS as blue. Full color version available online.

Article Snippet: We sampled the lower respiratory microbiome of each bird via tracheo-bronchoalveolar lavage ( T-BAL ) and subsequently sequenced 16S rRNA gene by next generating sequencing ( NGS ) (454-pyrosequencing); the region is considered highly conserved across different species of bacteria and archaea (Clarridge, 2004 ; Streit and Schmitz, 2004 ; Schuster, 2008 ).

Techniques: Sequencing