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Summary of software for metabolic flux analysis

Journal: Metabolic engineering

Article Title: Understanding metabolism with flux analysis: from theory to application

doi: 10.1016/j.ymben.2016.09.005

Figure Lengend Snippet: Summary of software for metabolic flux analysis

Article Snippet: The flux uncertainty is minimized in the optimal experimental design procedure to achieve a more accurate evaluation of the fluxes. table ft1 table-wrap mode="anchored" t5 caption a7 Software Isotopomer Balancing Model Statistical Analysis Optimal Experimental Design Discription 13CFLUX( Wiechert et al., 2001 ) Isotopomer Linear Supported C++ software for 13 C-MFA 13CFLUX2( Weitzel et al., 2013 ) Cumomer/EMU Linear/Monte Carlo Supported C++ software for 13 C-MFA FiatFlux( Zamboni et al., 2005 ) Flux ratio analysis Linear Not supported Matlab software for flux ratio analysis OpenFlux( Quek et al., 2009 ) EMU Non-linear search/Monte Carlo Supported Matlab software for 13 C-MFA OpenFlux2( Shupletsov et al., 2014 ) EMU Non-linear search/Monte Carlo Supported Matlab software for 13 C-MFA influx_s( Sokol et al., 2012 ) Cumomer/EMU Linear/Monte Carlo Not supported Software package for 13 C-MFA implementing an efficient algorithm for iterative fitting, programmed in R and Python INCA( Young, 2014 ) EMU Linear/Non-linear search/Monte Carlo Supported Matlab software for 13 C-MFA and INST-MFA OpenMebius( Kajihata et al., 2014 ) EMU Non-linear search Matlab software for 13 C-MFA and INST-MFA C13( Cvijovic et al., 2010 ; Garcia-Albornoz et al., 2014 ) Isotopomer Not Supported Not Supported A module for 13 C-MFA in the software packages BioMet Toolbox and BioMet Toolbox 2.0 Open in a separate window Summary of software for metabolic flux analysis 3.1.

Techniques: Software