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Pfeuffer GmbH openms
Openms, supplied by Pfeuffer GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/visualization+toolkit+(vtk)+open-source+software+module/openms/pm35503992-145-64-32
Average 90 stars, based on 1 article reviews
openms - by Bioz Stars, 2026-09
90/100 stars

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Mass Spectrometry:

Article Title: MSCI: an open-source Python package for information content assessment of peptide fragmentation spectra
Article Snippet: .. The MSCI Python package relies on state-of-the-art proteomics mass spectrometry Python libraries such as matchms ( Huber et al. 2021 ), Pyteomics ( Goloborodko et al. 2013 ), and OpenMS ( Röst et al. 2014 , Pfeuffer et al. 2024 ), as well as, on extensively-tested general purpose computing packages like NumPy ( Harris et al. 2020 ), Pandas , and Biopython ( Cock et al. 2009 ). ..

Article Title: Reproducible MS/MS library cleaning pipeline in matchms.
Article Snippet: .. Pfeuffer J, Bielow C, Wein S, Jeong K, Netz E, Walter A, Alka O, Nilse L, Colaianni PD, McCloskey D (2024) OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. ..

Article Title: OpenMS WebApps: Building User-Friendly Solutions for MS Analysis.
Article Snippet: .. PROTEOMICS 2014, 14 (1), 74−77. (2) Pfeuffer, J.; et al. OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data,. ..

Article Title: Cysteine-Directed Isobaric Labeling Combined with GeLC-FAIMS-MS for Quantitative Top-Down Proteomics.
Article Snippet: .. 2012, 30, 918−920. (33) Pfeuffer, J.; Bielow, C.; Wein, S.; Jeong, K.; Netz, E.; Walter, A.; Alka, O.; Nilse, L.; Colaianni, P. D.; McCloskey, D.; et al. OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. ..

Article Title: Open-Source and FAIR Research Software for Proteomics.
Article Snippet: .. 2010, 20 (9), 1297−1303. (29) Pfeuffer, J.; Bielow, C.; Wein, S.; Jeong, K.; Netz, E.; Walter, A.; Alka, O.; Nilse, L.; Colaianni, P. D.; McCloskey, D.; et al. OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. ..

other:

Article Title: MSConnect: Open-Source, End-to-End Platform for Automated Mass Spectrometry Data Management, Analysis, and Visualization.
Article Snippet: The scale of mass spectrometry-based proteomics data sets continues to increase, and the analysis workflows are becoming more complex as various steps are carried out using a multitude of software programs developed by both commercial providers and the research community.. Manually shepherding data across multiple programs and in-house-developed scripts can be error prone and labor intensive.. It is also difficult for others to follow the same steps, leading to poor repeatability.

Article Title: Comprehensive Mass Spectrometry Workflows to Systematically Elucidate Transformation Processes of Organic Micropollutants: A Case Study on the Photodegradation of Four Pharmaceuticals.
Article Snippet: Proteomics, 2011, 10, 1, . (40) Röst, H. L.; Sachsenberg, T.; Aiche, S.; Bielow, C.; Weisser, H.; Aicheler, F.; Andreotti, S.; Ehrlich, H.-C.; Gutenbrunner, P.; Kenar, E.; Liang, X.; Nahnsen, S.; Nilse, L.; Pfeuffer, J.; Rosenberger, G.; Rurik, M.; Schmitt, U.; Veit, J.; Walzer, M.; Wojnar, D.; Wolski, W. E.; Schilling, O.; Choudhary, J. S.; Malmström, L.; Aebersold, R.; Reinert, K.; Kohlbacher, O. OpenMS: A Flexible Open-Source Software Platform for Mass Spectrometry Data Analysis.

Article Title: Machine Learning-based Classification for the Prioritization of Potentially Hazardous Chemicals with Structural Alerts in Nontarget Screening.
Article Snippet: 2021, 13 (1), 1. (55) Rost, H. L.; Sachsenberg, T.; Aiche, S.; Bielow, C.; Weisser, H.; Aicheler, F.; Andreotti, S.; Ehrlich, H. C.; Gutenbrunner, P.; Kenar, E.; Liang, X.; Nahnsen, S.; Nilse, L.; Pfeuffer, J.; Rosenberger, G.; Rurik, M.; Schmitt, U.; Veit, J.; Walzer, M.; Wojnar, D.; Wolski, W. E.; Schilling, O.; Choudhary, J. S.; Malmstrom, L.; Aebersold, R.; Reinert, K.; Kohlbacher, O. OpenMS: a flexible open-source software platform for mass spectrometry data analysis.



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Kitware Inc visualization toolkit (vtk) open-source software module
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