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visium  (Spatial Transcriptomics Inc)

 
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    Spatial Transcriptomics Inc visium
    Visium, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+image+alignment+function/visium/pmc12807523-90-0-3
    Average 86 stars, based on 1 article reviews
    visium - by Bioz Stars, 2026-11
    86/100 stars

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    Related Articles

    Preserving:

    Article Title: The Spatiotemporal Heterogeneity of Tumor-Associated Stromal Cells: Reprogramming Plasticity to Unlock Precision Cancer Immunotherapy
    Article Snippet: .. Spatial transcriptomics (ST) and its derivative platforms (e.g., Visium, MERSCOPE, CosMx, and Stereo-seq) provide insights into the cellular ecological niche of the TME while preserving spatial topological information [ ]. ..

    Spatial Transcriptomics:

    Article Title: Adding highly variable genes to spatially variable genes can improve cell type clustering performance in spatial transcriptomics data
    Article Snippet: .. To ensure a comprehensive representation of major current Spatial Transcriptomics platforms, we chose 10 datasets from Visium, including a Mouse Olfactory Bulb study ( Ståhl et al. 2016 ), an Ovarian Cancer study ( Sanders et al. 2022 ), and a Breast Cancer study ( Andersson et al. 2021 ). .. We also included 12 datasets from MERFISH (Vizgen) on the Mouse Brain Hypothalamic region ( Moffitt et al. 2018 ), 10 datasets from Xenium on the human kidney ( Benjamin et al. 2024 ) and Mouse Brain Anterior Thalamic Nuclei (ATN) ( Kapustina et al. 2024 ), and 20 datasets from CosMx (Nanostring) on human Non-Small Cell Lung Cancer (NSCLC) ( He et al. 2022 ).

    Article Title: Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte shifts in epileptogenesis beyond the hippocampus.
    Article Snippet: .. We collected brains from both rodent lithium-pilocarpine-induced SE rats and lithium-control counterparts to apply the Visium spatial transcriptomics technology. ..

    Article Title: Single-cell and spatial profiling highlights TB-induced myofibroblasts as drivers of lung pathology
    Article Snippet: Cells were then stained with trypan blue (Thermo Fisher Scientific) and enumerated using an automated cell counter (Bio-Rad) or a manual counter (Kova). .. Spatial transcriptomics (Visium) samples: A section of lung was cut and transferred to 10% buffered formalin to fix for 24 h, then transferred to 70% ethanol until wax embedding. ..

    Olfactory:

    Article Title: Adding highly variable genes to spatially variable genes can improve cell type clustering performance in spatial transcriptomics data
    Article Snippet: .. To ensure a comprehensive representation of major current Spatial Transcriptomics platforms, we chose 10 datasets from Visium, including a Mouse Olfactory Bulb study ( Ståhl et al. 2016 ), an Ovarian Cancer study ( Sanders et al. 2022 ), and a Breast Cancer study ( Andersson et al. 2021 ). .. We also included 12 datasets from MERFISH (Vizgen) on the Mouse Brain Hypothalamic region ( Moffitt et al. 2018 ), 10 datasets from Xenium on the human kidney ( Benjamin et al. 2024 ) and Mouse Brain Anterior Thalamic Nuclei (ATN) ( Kapustina et al. 2024 ), and 20 datasets from CosMx (Nanostring) on human Non-Small Cell Lung Cancer (NSCLC) ( He et al. 2022 ).

    Modification:

    Article Title: Spatial transcriptional profiling of CHB liver biopsies reveals an undetected population of zonally biased HBV-integrated cells.
    Article Snippet: .. 6 Methods: Modified Visium Spatial Transcriptomics (ST) and Single Nuclei RNASeq (snRNASeq) 7 were performed on 4 commercial HBV+ biopsies, and 6 liver biopsies from the clinical trial GS-8 US-174-0149. mIF for HBV viral proteins and CISH for HBV RNA and DNA were also performed. ..

    RNA sequencing:

    Article Title: Spatial transcriptional profiling of CHB liver biopsies reveals an undetected population of zonally biased HBV-integrated cells.
    Article Snippet: .. 6 Methods: Modified Visium Spatial Transcriptomics (ST) and Single Nuclei RNASeq (snRNASeq) 7 were performed on 4 commercial HBV+ biopsies, and 6 liver biopsies from the clinical trial GS-8 US-174-0149. mIF for HBV viral proteins and CISH for HBV RNA and DNA were also performed. ..

    Chromogenic In Situ Hybridization:

    Article Title: Spatial transcriptional profiling of CHB liver biopsies reveals an undetected population of zonally biased HBV-integrated cells.
    Article Snippet: .. 6 Methods: Modified Visium Spatial Transcriptomics (ST) and Single Nuclei RNASeq (snRNASeq) 7 were performed on 4 commercial HBV+ biopsies, and 6 liver biopsies from the clinical trial GS-8 US-174-0149. mIF for HBV viral proteins and CISH for HBV RNA and DNA were also performed. ..

    Fluorescence:

    Article Title: Understanding and Advancing Wound Healing in the Era of Multi-Omic Technology
    Article Snippet: .. Spatial transcriptomics platforms such as 10× Visium, Slide-seq, and Multiplexed error-robust fluorescence in situ hybridization (MERFISH) preserve tissue architecture while capturing spatially resolved gene expression profiles, enabling the identification of spatial gradients in inflammatory signaling, revascularization, and epidermal regeneration [ , ]. ..

    Article Title: Understanding and Advancing Wound Healing in the Era of Multi-Omic Technology.
    Article Snippet: .. Spatial transcriptomics platforms such as 10× Visium, Slide-seq, and Multiplexed error-robust fluorescence in situ hybridization (MERFISH) preserve tissue architecture while capturing spatially resolved gene expression profiles, enabling the identification of spatial gradients in inflammatory signaling, revascularization, and epidermal regeneration [66,67]. ..

    In Situ Hybridization:

    Article Title: Understanding and Advancing Wound Healing in the Era of Multi-Omic Technology
    Article Snippet: .. Spatial transcriptomics platforms such as 10× Visium, Slide-seq, and Multiplexed error-robust fluorescence in situ hybridization (MERFISH) preserve tissue architecture while capturing spatially resolved gene expression profiles, enabling the identification of spatial gradients in inflammatory signaling, revascularization, and epidermal regeneration [ , ]. ..

    Article Title: Understanding and Advancing Wound Healing in the Era of Multi-Omic Technology.
    Article Snippet: .. Spatial transcriptomics platforms such as 10× Visium, Slide-seq, and Multiplexed error-robust fluorescence in situ hybridization (MERFISH) preserve tissue architecture while capturing spatially resolved gene expression profiles, enabling the identification of spatial gradients in inflammatory signaling, revascularization, and epidermal regeneration [66,67]. ..

    Gene Expression:

    Article Title: Understanding and Advancing Wound Healing in the Era of Multi-Omic Technology
    Article Snippet: .. Spatial transcriptomics platforms such as 10× Visium, Slide-seq, and Multiplexed error-robust fluorescence in situ hybridization (MERFISH) preserve tissue architecture while capturing spatially resolved gene expression profiles, enabling the identification of spatial gradients in inflammatory signaling, revascularization, and epidermal regeneration [ , ]. ..

    Article Title: Understanding and Advancing Wound Healing in the Era of Multi-Omic Technology.
    Article Snippet: .. Spatial transcriptomics platforms such as 10× Visium, Slide-seq, and Multiplexed error-robust fluorescence in situ hybridization (MERFISH) preserve tissue architecture while capturing spatially resolved gene expression profiles, enabling the identification of spatial gradients in inflammatory signaling, revascularization, and epidermal regeneration [66,67]. ..

    Article Title: Transcriptomics in solanaceous crop improvement: advances and opportunities
    Article Snippet: .. Spatial transcriptomics technologies, including Visium, Slide-seq, and emerging in situ sequencing methods preserve tissue architecture while profiling spatially resolved gene expression, enabling reconstruction of cell-type-specific expression programs without physical cell isolation. ..

    In Situ:

    Article Title: Transcriptomics in solanaceous crop improvement: advances and opportunities
    Article Snippet: .. Spatial transcriptomics technologies, including Visium, Slide-seq, and emerging in situ sequencing methods preserve tissue architecture while profiling spatially resolved gene expression, enabling reconstruction of cell-type-specific expression programs without physical cell isolation. ..

    Sequencing:

    Article Title: Transcriptomics in solanaceous crop improvement: advances and opportunities
    Article Snippet: .. Spatial transcriptomics technologies, including Visium, Slide-seq, and emerging in situ sequencing methods preserve tissue architecture while profiling spatially resolved gene expression, enabling reconstruction of cell-type-specific expression programs without physical cell isolation. ..

    Expressing:

    Article Title: Transcriptomics in solanaceous crop improvement: advances and opportunities
    Article Snippet: .. Spatial transcriptomics technologies, including Visium, Slide-seq, and emerging in situ sequencing methods preserve tissue architecture while profiling spatially resolved gene expression, enabling reconstruction of cell-type-specific expression programs without physical cell isolation. ..

    Cell Isolation:

    Article Title: Transcriptomics in solanaceous crop improvement: advances and opportunities
    Article Snippet: .. Spatial transcriptomics technologies, including Visium, Slide-seq, and emerging in situ sequencing methods preserve tissue architecture while profiling spatially resolved gene expression, enabling reconstruction of cell-type-specific expression programs without physical cell isolation. ..



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