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SourceForge net tgicl software
Tgicl Software, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptome+assembly+software+trinity/tgicl+software/pmc10345741-85-6-9
Average 90 stars, based on 1 article reviews
tgicl software - by Bioz Stars, 2026-11
90/100 stars

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Article Title: Identification of key genes and regulators associated with carotenoid metabolism in apricot ( Prunus armeniaca ) fruit using weighted gene coexpression network analysis
Article Snippet: The assembled unigenes were first filtered to remove redundant sequences and further spliced using the TGICL ( https://sourceforge.net/projects/tgicl/files/tgicl%20v2.1/ ) version 2.1 software package [ ].

Software:

Article Title: Differentially expressed genes in the testes from early to mature development of banana shrimp (Fenneropenaeus merguiensis).
Article Snippet: .. Using the TGICL software (v2.0.6) (https://sourceforge.net/projects/tgicl/files/tgicl/), gene family clustering was performed to obtain the final unigenes. ..

Article Title: Transcriptome Analysis Reveals Molecular Signatures of Luteoloside Accumulation in Senescing Leaves of Lonicera macranthoides
Article Snippet: .. Trinity (version 2.0.6) ( http://trinityrnaseq.github.io/ ) and TGICL software (version r2013-04-11) ( https://sourceforge.net/projects/tgicl/ ) were employed to assemble our clean data. ..

Article Title: Identification of a TuMV isolate (TuMV-ZR) from Pseudostellaria heterophylla and its development into a viral expression vector
Article Snippet: .. Primary transcripts were further assembled with TGICL software ( https://sourceforge.net/projects/tgicl/files/tgicl%20v2.1/ ) to remove duplicate sequences ( B). ..

Article Title: Differentially expressed genes in the testes from early to mature development of banana shrimp ( Fenneropenaeus merguiensis )
Article Snippet: .. Using the TGICL software (v2.0.6) ( https://sourceforge.net/projects/tgicl/files/tgicl/ ), gene family clustering was performed to obtain the final unigenes. ..

Article Title: An Integrated Transcriptome and Proteome Analysis Reveals Putative Regulators of Adventitious Root Formation in Taxodium ‘Zhongshanshan’
Article Snippet: .. The assembled sequences were called unigenes and the Tgicl software package (version 2.0.6, http://sourceforge.net/projects/tgicl/files/tgicl ) was used to remove spliced and redundant sequences to acquire non-redundant unigenes that were as long as possible. .. The unigenes were aligned with sequences in the NCBI non-redundant nucleotide sequences (NT), NCBI non-redundant protein sequences (NR), Swiss-Prot (a manually annotated and reviewed protein sequence database), Kyoto Encyclopedia of Genes and Genomes (KEGG) and Cluster of Orthologous Groups of proteins (COG) using a BLAST algorithm-based search (version 2.2.23, http://sourceforge.net/projects/tgicl/files/tgicl ) [ ].

Article Title: Effect of dietary carbohydrate on glycometabolism of juvenile golden pompano (Trachinotus ovatus) related to growth performance, hepatic histopathology, transcriptome profiles and identification of differentially expressed genes
Article Snippet: A hepatic transcriptome was produced through the technology of RNA sequencing and short-read assembly in golden pompano Trachinotus ovatus fed with three experimental diets respectively containing low carbohydrate diet (LCD), intermediate carbohydrate diet (MCD), and high carbohydrate diet (HCD).. In total, 57,217 unigenes were acquired in the current study, with average length 1182.24 bp.. 21,920, 22,514 and 24,680 unigenes were acquired from LCD, MCD and HCD groups, respectively.

Article Title: A NAC transcription factor ZaNAC93 confers floral initiation, fruit development, and prickle formation in Zanthoxylum armatum.
Article Snippet: Zanthoxylum armatum is a dioecious prickly plant which developed apomictic reproduction.. The increases in male flowers and prickle density in female plants lead to low yield and picking efficiency.. However, little is known concerning the mechanisms of floral development and prickle formation.



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