Review



seqsphere+ mst  (Ridom GmbH)

 
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
    • 90
      Buy from Supplier

    Structured Review

    Ridom GmbH seqsphere+ mst
    Seqsphere+ Mst, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere/seqsphere++mst/pmc10238789-110-0-0
    Average 90 stars, based on 1 article reviews
    seqsphere+ mst - by Bioz Stars, 2026-10
    90/100 stars

    Images

    Related Articles

    Generated:

    Article Title: Genomic characteristics and phylogenetic analyses of colonization and infection with carbapenem-resistant Klebsiella pneumoniae in multicenter intensive care units: a cohort study.
    Article Snippet: In this study, 93.4% of the CRKp strains were shown to harbor the blaKPC-2 gene, which was consistent with findings of previous studies showing a high prevalence of FIG 4 Ridom SeqSphere + minimum spanning tree (MST) for 61 CRKp strains based on 2,358 target genes with pairwise ignoring missing values.

    Article Title: Bacterial contamination of water used as thermal transfer fluid in fluid-warming devices.
    Article Snippet: Handling errors of the IHD, for example during installation or de-installation of the single-use tubing system, or breaches in adherence to device use may lead to the distribution of s. Ridom SeqSphere+ MST for 13 samples based on 3940 columns, pairwise ignoring missing values Distance based on columns from M. intracellulare cgMLST 3940 targets subsp. chimaera (3940) Comparison table created: 22.06.2022 12:03 (v8.3.4_(2022-03)) Projects: M. intracellulare_chimaera_DMS44623 (Mycobacterium intracellulare) For citing correctly in publications the tools used for this analysis see menu Help | citations and Licenses.

    Article Title: Wastewater based genomic surveillance key to population level monitoring of AmpC/ESBL producing Escherichia coli.
    Article Snippet: The Ridom SeqSphere+ MST was based on 2513 genes using a cluster distance threshold of 20. (b) Minimum Spanning Tree from the core genome MLST of 39 ST131 isolates from wastewater isolates (n = 18) from this study and human isolates (n = 21) from Kurittu et al.28 in Finland.

    Article Title: Wastewater based genomic surveillance key to population level monitoring of AmpC/ESBL producing Escherichia coli
    Article Snippet: The Ridom SeqSphere+ MST was based on 2513 genes using a cluster distance threshold of 20. ( b ) Minimum Spanning Tree from the core genome MLST of 39 ST131 isolates from wastewater isolates (n = 18) from this study and human isolates (n = 21) from Kurittu et al. in Finland.

    Article Title: Comparative genomics of Acinetobacter baumannii from Egyptian healthcare settings reveals high-risk clones and resistance gene mobilization.
    Article Snippet: The ST570 isolate from outside Egypt is marked with a red circle. (b) Minimum spanning tree (MST) generated using Ridom SeqSphere + illustrating 11 ST85 A. baumannii isolates, which include 3 Egyptian and eight worldwide isolates.

    Article Title: Staphylococcus aureus from Atopic Dermatitis Patients: Its Genetic Structure and Susceptibility to Phototreatment.
    Article Snippet: The obtained results FIG 2 A minimum spanning tree (MST), created using Ridom SeqSphere1 software, based on spa type profiles of 133 S. aureus isolates recovered from AD patients with MLST-CCs/STs indicated.

    Isolation:

    Article Title: Genomic characteristics and phylogenetic analyses of colonization and infection with carbapenem-resistant Klebsiella pneumoniae in multicenter intensive care units: a cohort study.
    Article Snippet: In this study, 93.4% of the CRKp strains were shown to harbor the blaKPC-2 gene, which was consistent with findings of previous studies showing a high prevalence of FIG 4 Ridom SeqSphere + minimum spanning tree (MST) for 61 CRKp strains based on 2,358 target genes with pairwise ignoring missing values.

    Article Title: Bacterial contamination of water used as thermal transfer fluid in fluid-warming devices.
    Article Snippet: Handling errors of the IHD, for example during installation or de-installation of the single-use tubing system, or breaches in adherence to device use may lead to the distribution of s. Ridom SeqSphere+ MST for 13 samples based on 3940 columns, pairwise ignoring missing values Distance based on columns from M. intracellulare cgMLST 3940 targets subsp. chimaera (3940) Comparison table created: 22.06.2022 12:03 (v8.3.4_(2022-03)) Projects: M. intracellulare_chimaera_DMS44623 (Mycobacterium intracellulare) For citing correctly in publications the tools used for this analysis see menu Help | citations and Licenses.

    Article Title: Wastewater based genomic surveillance key to population level monitoring of AmpC/ESBL producing Escherichia coli.
    Article Snippet: The Ridom SeqSphere+ MST was based on 2513 genes using a cluster distance threshold of 20. (b) Minimum Spanning Tree from the core genome MLST of 39 ST131 isolates from wastewater isolates (n = 18) from this study and human isolates (n = 21) from Kurittu et al.28 in Finland.

    Article Title: Wastewater based genomic surveillance key to population level monitoring of AmpC/ESBL producing Escherichia coli
    Article Snippet: The Ridom SeqSphere+ MST was based on 2513 genes using a cluster distance threshold of 20. ( b ) Minimum Spanning Tree from the core genome MLST of 39 ST131 isolates from wastewater isolates (n = 18) from this study and human isolates (n = 21) from Kurittu et al. in Finland.

    Article Title: Comparative genomics of Acinetobacter baumannii from Egyptian healthcare settings reveals high-risk clones and resistance gene mobilization.
    Article Snippet: The ST570 isolate from outside Egypt is marked with a red circle. (b) Minimum spanning tree (MST) generated using Ridom SeqSphere + illustrating 11 ST85 A. baumannii isolates, which include 3 Egyptian and eight worldwide isolates.

    Article Title: Staphylococcus aureus from Atopic Dermatitis Patients: Its Genetic Structure and Susceptibility to Phototreatment.
    Article Snippet: The obtained results FIG 2 A minimum spanning tree (MST), created using Ridom SeqSphere1 software, based on spa type profiles of 133 S. aureus isolates recovered from AD patients with MLST-CCs/STs indicated.

    Software:

    Article Title: Genomic characteristics and phylogenetic analyses of colonization and infection with carbapenem-resistant Klebsiella pneumoniae in multicenter intensive care units: a cohort study.
    Article Snippet: In this study, 93.4% of the CRKp strains were shown to harbor the blaKPC-2 gene, which was consistent with findings of previous studies showing a high prevalence of FIG 4 Ridom SeqSphere + minimum spanning tree (MST) for 61 CRKp strains based on 2,358 target genes with pairwise ignoring missing values.

    Article Title: Bacterial contamination of water used as thermal transfer fluid in fluid-warming devices.
    Article Snippet: Handling errors of the IHD, for example during installation or de-installation of the single-use tubing system, or breaches in adherence to device use may lead to the distribution of s. Ridom SeqSphere+ MST for 13 samples based on 3940 columns, pairwise ignoring missing values Distance based on columns from M. intracellulare cgMLST 3940 targets subsp. chimaera (3940) Comparison table created: 22.06.2022 12:03 (v8.3.4_(2022-03)) Projects: M. intracellulare_chimaera_DMS44623 (Mycobacterium intracellulare) For citing correctly in publications the tools used for this analysis see menu Help | citations and Licenses.

    Article Title: Wastewater based genomic surveillance key to population level monitoring of AmpC/ESBL producing Escherichia coli.
    Article Snippet: The Ridom SeqSphere+ MST was based on 2513 genes using a cluster distance threshold of 20. (b) Minimum Spanning Tree from the core genome MLST of 39 ST131 isolates from wastewater isolates (n = 18) from this study and human isolates (n = 21) from Kurittu et al.28 in Finland.

    Article Title: Wastewater based genomic surveillance key to population level monitoring of AmpC/ESBL producing Escherichia coli
    Article Snippet: The Ridom SeqSphere+ MST was based on 2513 genes using a cluster distance threshold of 20. ( b ) Minimum Spanning Tree from the core genome MLST of 39 ST131 isolates from wastewater isolates (n = 18) from this study and human isolates (n = 21) from Kurittu et al. in Finland.

    Article Title: Comparative genomics of Acinetobacter baumannii from Egyptian healthcare settings reveals high-risk clones and resistance gene mobilization.
    Article Snippet: The ST570 isolate from outside Egypt is marked with a red circle. (b) Minimum spanning tree (MST) generated using Ridom SeqSphere + illustrating 11 ST85 A. baumannii isolates, which include 3 Egyptian and eight worldwide isolates.

    Article Title: Staphylococcus aureus from Atopic Dermatitis Patients: Its Genetic Structure and Susceptibility to Phototreatment.
    Article Snippet: The obtained results FIG 2 A minimum spanning tree (MST), created using Ridom SeqSphere1 software, based on spa type profiles of 133 S. aureus isolates recovered from AD patients with MLST-CCs/STs indicated.

    Comparison:

    Article Title: Genomic characteristics and phylogenetic analyses of colonization and infection with carbapenem-resistant Klebsiella pneumoniae in multicenter intensive care units: a cohort study.
    Article Snippet: In this study, 93.4% of the CRKp strains were shown to harbor the blaKPC-2 gene, which was consistent with findings of previous studies showing a high prevalence of FIG 4 Ridom SeqSphere + minimum spanning tree (MST) for 61 CRKp strains based on 2,358 target genes with pairwise ignoring missing values.

    Article Title: Bacterial contamination of water used as thermal transfer fluid in fluid-warming devices.
    Article Snippet: Handling errors of the IHD, for example during installation or de-installation of the single-use tubing system, or breaches in adherence to device use may lead to the distribution of s. Ridom SeqSphere+ MST for 13 samples based on 3940 columns, pairwise ignoring missing values Distance based on columns from M. intracellulare cgMLST 3940 targets subsp. chimaera (3940) Comparison table created: 22.06.2022 12:03 (v8.3.4_(2022-03)) Projects: M. intracellulare_chimaera_DMS44623 (Mycobacterium intracellulare) For citing correctly in publications the tools used for this analysis see menu Help | citations and Licenses.

    Article Title: Wastewater based genomic surveillance key to population level monitoring of AmpC/ESBL producing Escherichia coli.
    Article Snippet: The Ridom SeqSphere+ MST was based on 2513 genes using a cluster distance threshold of 20. (b) Minimum Spanning Tree from the core genome MLST of 39 ST131 isolates from wastewater isolates (n = 18) from this study and human isolates (n = 21) from Kurittu et al.28 in Finland.

    Article Title: Wastewater based genomic surveillance key to population level monitoring of AmpC/ESBL producing Escherichia coli
    Article Snippet: The Ridom SeqSphere+ MST was based on 2513 genes using a cluster distance threshold of 20. ( b ) Minimum Spanning Tree from the core genome MLST of 39 ST131 isolates from wastewater isolates (n = 18) from this study and human isolates (n = 21) from Kurittu et al. in Finland.

    Article Title: Comparative genomics of Acinetobacter baumannii from Egyptian healthcare settings reveals high-risk clones and resistance gene mobilization.
    Article Snippet: The ST570 isolate from outside Egypt is marked with a red circle. (b) Minimum spanning tree (MST) generated using Ridom SeqSphere + illustrating 11 ST85 A. baumannii isolates, which include 3 Egyptian and eight worldwide isolates.

    Article Title: Staphylococcus aureus from Atopic Dermatitis Patients: Its Genetic Structure and Susceptibility to Phototreatment.
    Article Snippet: The obtained results FIG 2 A minimum spanning tree (MST), created using Ridom SeqSphere1 software, based on spa type profiles of 133 S. aureus isolates recovered from AD patients with MLST-CCs/STs indicated.



    Similar Products

    seqsphere + v9.0.1  (Ridom GmbH)
    90
    Ridom GmbH seqsphere + v9.0.1
    Seqsphere + V9.0.1, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere/seqsphere/pmc12278488-249-14-19
    Average 90 stars, based on 1 article reviews
    seqsphere + v9.0.1 - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    seqsphere+ software  (Ridom GmbH)
    90
    Ridom GmbH seqsphere+ software
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Seqsphere+ Software, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere/seqsphere/pmc12278488-119-12-15
    Average 90 stars, based on 1 article reviews
    seqsphere+ software - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    software ridom seqsphere  (Ridom GmbH)
    90
    Ridom GmbH software ridom seqsphere
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Software Ridom Seqsphere, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere/ridom+seqsphere/pm40662699-81-13-15
    Average 90 stars, based on 1 article reviews
    software ridom seqsphere - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    seqsphere+ v9.0.10  (Ridom GmbH)
    90
    Ridom GmbH seqsphere+ v9.0.10
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Seqsphere+ V9.0.10, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere/seqsphere/med_rxiv__2025__07__09__25331181-68-11-11
    Average 90 stars, based on 1 article reviews
    seqsphere+ v9.0.10 - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    seqsphere+ version 7.2.0  (Ridom GmbH)
    90
    Ridom GmbH seqsphere+ version 7.2.0
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Seqsphere+ Version 7.2.0, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere/seqsphere/pm40611607-38-49-53
    Average 90 stars, based on 1 article reviews
    seqsphere+ version 7.2.0 - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    seqsphere + v9.0  (Ridom GmbH)
    90
    Ridom GmbH seqsphere + v9.0
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Seqsphere + V9.0, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere/seqsphere/pm40604219-279-11-10
    Average 90 stars, based on 1 article reviews
    seqsphere + v9.0 - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    seqsphere v8 4.1  (Ridom GmbH)
    90
    Ridom GmbH seqsphere v8 4.1
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Seqsphere V8 4.1, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere/seqsphere/pm40598626-98-7-7
    Average 90 stars, based on 1 article reviews
    seqsphere v8 4.1 - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    seqsphere  (Ridom GmbH)
    90
    Ridom GmbH seqsphere
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Seqsphere, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere/seqsphere/pm40598626-5-7-7
    Average 90 stars, based on 1 article reviews
    seqsphere - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    seqsphere + software v 7.7.2  (Ridom GmbH)
    90
    Ridom GmbH seqsphere + software v 7.7.2
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Seqsphere + Software V 7.7.2, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere/seqsphere/pm40598567-87-7-12
    Average 90 stars, based on 1 article reviews
    seqsphere + software v 7.7.2 - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom Seqsphere + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site

    Journal: BMC Microbiology

    Article Title: Multi-host distribution of Rhodococcus equi (Prescottella equi) strains and their phylogenomic clustering

    doi: 10.1186/s12866-025-04152-8

    Figure Lengend Snippet: Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom Seqsphere + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site

    Article Snippet: Core-genome MLST (cgMLST) analysis for 286 R. equi genomes was performed in Ridom Seqsphere+ (v9.0.1; Ridom GmbH, Münster, Germany).

    Techniques: Construct, Generated, Isolation, Plasmid Preparation