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SourceForge net samtools
Samtools, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mpileup+algorithm+of+samtools/samtools/pm25886285-219-0-22
Average 90 stars, based on 1 article reviews
samtools - by Bioz Stars, 2026-10
90/100 stars

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Article Title: Mutant prevention concentrations and phenotypic and genomic profiling of first-step resistance mechanisms to classical and novel β-lactams in Pseudomonas aeruginosa .
Article Snippet: A growing number of novel antipseudomonal β-lactams have been introduced in recent years, but the emergence of resistance is still a major con cern in the treatment of Pseudomonas aeruginosa infections.. Here, we compared the mutant prevention concentrations (MPCs) and the nature of first-step resistant mutants to classical and novel β-lactams in P. aeruginosa.. MPCs were determined in duplicate experiments for ceftazidime, ceftazidime/avibactam, ceftolozane/tazobactam, imipenem, imipenem/relebactam, meropenem, meropenem/vaborbactam, aztreonam, aztreonam/avibactam, and cefiderocol in PAO1, PAOMS (ΔmutS), and three extensively drug-resistant (XDR) clinical strains belonging to high-risk clones ST111, ST175, and ST235.

Article Title: In vitro potentiation of tetracyclines in Pseudomonas aeruginosa by RW01, a new cyclic peptide
Article Snippet: Pileups and raw files of the mapped reads were obtained by using SAMtools, version 0.1.16 ( https://sourceforge.net/projects/samtools/files/samtools/ ) , and PicardTools, version 1.140 ( https://github.com/broadinstitute/picard ).

Article Title: Landscape of the Epstein-Barr virus-host chromatin interactome and gene regulation
Article Snippet: SAMtools (v0.1.19) , Li et al, http://samtools.sourceforge.net , .

Article Title: Differential contribution of PBP occupancy and efflux on the effectiveness of β-lactams at their target site in clinical isolates of Neisseria gonorrhoeae
Article Snippet: Pileups and raw files of the mapped reads were obtained by using SAMtools, version 0.1.16 ( https://sourceforge.net/projects/samtools/files/samtools/ ) [ ], and PicardTools, version 1.140 ( https://github.com/broadinstitute/picard ).

Article Title: Mutant prevention concentrations and phenotypic and genomic profiling of first-step resistance mechanisms to classical and novel β-lactams in Pseudomonas aeruginosa
Article Snippet: Pileups and raw files of the mapped reads were obtained using SAMtools, version 0.1.16 ( https://sourceforge.net/projects/samtools/files/samtools/ ) ( ) and Picard, version 1.140 ( https://github.com/broadinstitute/picard ).

Article Title: Differential contribution of PBP occupancy and efflux on the effectiveness of β-lactams at their target site in clinical isolates of Neisseria gonorrhoeae.
Article Snippet: Pileups and raw files of the mapped reads were obtained by using SAMtools, version 0.1.16 (https://sourceforge.net/ projects/samtools/files/samtools/) [66], and PicardTools, version 1.140 (https://github.com/ PLOS Pathogens | https://doi.org/10.1371/journal.ppat.1012783 December 31, 2024 18 / 25 broadinstitute/picard).

Polymerase Chain Reaction:

Article Title: Toll-Interacting Protein Down-Regulation by Cigarette Smoke Exposure Impairs Human Lung Defense against Influenza A Virus Infection
Article Snippet: .. SAMtools version 1.7 ( https://samtools.sourceforge.net ) was used to remove PCR duplicates. .. Narrow peaks were called by MACS2 version 2.1.2 ( https://anaconda.org/bioconda/macs2/files?sort=length&sort_order=desc&type=&version=2.1.2 ) with the q-value cutoff of 0.05.

Software:

Article Title: Conditional lethality and suppressor analysis of plasmid-based temperature-sensitive fabZ expression in Pseudomonas aeruginosa
Article Snippet: .. The reads were aligned to the reference genome ( http://www.pseudomonas.com ) using Burrows-Wheeler Aligner software ( http://bio-bwa.sourceforge.net ) , and mutations were identified using SAMtools ( ). ..



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SourceForge net mpileup algorithm of samtools
Mpileup Algorithm Of Samtools, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mpileup+algorithm+of+samtools/samtools+mpileup/pm38402753-80-12-14
Average 90 stars, based on 1 article reviews
mpileup algorithm of samtools - by Bioz Stars, 2026-10
90/100 stars
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