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CombiMatrix microarray imager software
Microarray Imager Software, supplied by CombiMatrix, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/microarray+imager/microarray+imager+software/pmc03075760-839-6-5
Average 90 stars, based on 1 article reviews
microarray imager software - by Bioz Stars, 2026-11
90/100 stars

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Related Articles

Microarray:

Article Title: Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
Article Snippet: cDNAs were finally purified using the NucleoSpin ExtractII kit from Macherey & Nagel and subjected to sequencing on the ROCHE 454 GS FLX platform according to manufacturer's instructions. .. Slides were scanned with a Perkin Elmer Scanarray 4000 XL raw data was extracted with Scanarray Express 4.0 and Microarray Imager (CombiMatrix) software. ..

Article Title: Response of the goat mammary gland to infection with Staphylococcus aureus revealed by gene expression profiling in milk somatic and white blood cells
Article Snippet: .. The hybridised arrays were scanned with a GenePix 4000B microarray scanner (Axon, Toronto, CA) and the images (TIF format) were exported to the CombiMatrix Microarray Imager Software, to perform quality checks of the hybridizations and the spots on the slide. .. The hybridised arrays were scanned with a GenePix 4000B microarray scanner (Axon, Toronto, CA) and the images (TIF format) were exported to the CombiMatrix Microarray Imager Software, to perform quality checks of the hybridizations and the spots on the slide.

Article Title: Seasonal Changes in Bacterial and Archaeal Gene Expression Patterns across Salinity Gradients in the Columbia River Coastal Margin
Article Snippet: .. Hybridization images were obtained using a ScanArray 4000 fluorescent scanner (PerkinElmer, Waltham, MA) at 5 micron resolution, and quantified with Microarray Imager software (CombiMatrix). .. For microarray re-use, the labeled targets were chemically denatured and removed from microarray probes as described in the CombiMatrix stripping protocol ( http://www.combimatrix.com/docs/PTL002_01_4x2K_StrippingReHyb.pdf ).

Article Title: Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species
Article Snippet: Data extraction was done using CombiMatrix Microarray Imager software and a quantile normalization of data was performed using Combimatrix Blist v0.6 software. .. Data extraction was done using CombiMatrix Microarray Imager software and a quantile normalization of data was performed using Combimatrix Blist v0.6 software. .. Expression data are available from the National Center for Biotechnology Information (NCBI) [GenBank: Gene Expression Omnibus accession number GSE14276 ].

Article Title: Common bean ( Phaseolus vulgaris L.) PvTIFY orchestrates global changes in transcript profile response to jasmonate and phosphorus deficiency
Article Snippet: .. The raw intensity data were first processed using the Combimatrix Microarray Imager software. ..

Software:

Article Title: Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
Article Snippet: cDNAs were finally purified using the NucleoSpin ExtractII kit from Macherey & Nagel and subjected to sequencing on the ROCHE 454 GS FLX platform according to manufacturer's instructions. .. Slides were scanned with a Perkin Elmer Scanarray 4000 XL raw data was extracted with Scanarray Express 4.0 and Microarray Imager (CombiMatrix) software. ..

Article Title: Response of the goat mammary gland to infection with Staphylococcus aureus revealed by gene expression profiling in milk somatic and white blood cells
Article Snippet: .. The hybridised arrays were scanned with a GenePix 4000B microarray scanner (Axon, Toronto, CA) and the images (TIF format) were exported to the CombiMatrix Microarray Imager Software, to perform quality checks of the hybridizations and the spots on the slide. .. The hybridised arrays were scanned with a GenePix 4000B microarray scanner (Axon, Toronto, CA) and the images (TIF format) were exported to the CombiMatrix Microarray Imager Software, to perform quality checks of the hybridizations and the spots on the slide.

Article Title: Seasonal Changes in Bacterial and Archaeal Gene Expression Patterns across Salinity Gradients in the Columbia River Coastal Margin
Article Snippet: .. Hybridization images were obtained using a ScanArray 4000 fluorescent scanner (PerkinElmer, Waltham, MA) at 5 micron resolution, and quantified with Microarray Imager software (CombiMatrix). .. For microarray re-use, the labeled targets were chemically denatured and removed from microarray probes as described in the CombiMatrix stripping protocol ( http://www.combimatrix.com/docs/PTL002_01_4x2K_StrippingReHyb.pdf ).

Article Title: Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species
Article Snippet: Data extraction was done using CombiMatrix Microarray Imager software and a quantile normalization of data was performed using Combimatrix Blist v0.6 software. .. Data extraction was done using CombiMatrix Microarray Imager software and a quantile normalization of data was performed using Combimatrix Blist v0.6 software. .. Expression data are available from the National Center for Biotechnology Information (NCBI) [GenBank: Gene Expression Omnibus accession number GSE14276 ].

Article Title: Common bean ( Phaseolus vulgaris L.) PvTIFY orchestrates global changes in transcript profile response to jasmonate and phosphorus deficiency
Article Snippet: .. The raw intensity data were first processed using the Combimatrix Microarray Imager software. ..

other:

Article Title: General and species-specific transcriptional responses to downy mildew infection in a susceptible ( Vitis vinifera ) and a resistant ( V. riparia ) grapevine species
Article Snippet: Total RNA (1 μg) was amplified using the SuperScript Indirect RNA Amplification System (Invitrogen, USA), to incorporate amino-allyl UTP molecules (aRNA) and a fluorescent label (Alexa Fluor 647).

Article Title: Resistance to Plasmopara viticola in a grapevine segregating population is associated with stilbenoid accumulation and with specific host transcriptional responses
Article Snippet: Total RNA (1 μg) was amplified using the Amino Allyl MessageAmpII aRNA Amplification kit (Ambion, USA) and the resulted amminoallyl-aRNA was conjugated to a fluorescent label (Cy-5).

Article Title: Common bean ( Phaseolus vulgaris L.) PvTIFY orchestrates global changes in transcript profile response to jasmonate and phosphorus deficiency
Article Snippet: After hybridization and washing, the microarray was dipped in imaging solution, covered with LifterSlip, and then scanned using a GenePix 4000B microarray scanner (Axon) and the accompanying acquisition software (CombiMatrix Microarray Imager Software).

Hybridization:

Article Title: Seasonal Changes in Bacterial and Archaeal Gene Expression Patterns across Salinity Gradients in the Columbia River Coastal Margin
Article Snippet: .. Hybridization images were obtained using a ScanArray 4000 fluorescent scanner (PerkinElmer, Waltham, MA) at 5 micron resolution, and quantified with Microarray Imager software (CombiMatrix). .. For microarray re-use, the labeled targets were chemically denatured and removed from microarray probes as described in the CombiMatrix stripping protocol ( http://www.combimatrix.com/docs/PTL002_01_4x2K_StrippingReHyb.pdf ).

Extraction:

Article Title: Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species
Article Snippet: Data extraction was done using CombiMatrix Microarray Imager software and a quantile normalization of data was performed using Combimatrix Blist v0.6 software. .. Data extraction was done using CombiMatrix Microarray Imager software and a quantile normalization of data was performed using Combimatrix Blist v0.6 software. .. Expression data are available from the National Center for Biotechnology Information (NCBI) [GenBank: Gene Expression Omnibus accession number GSE14276 ].



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