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BioRap Technologies Ltd microarray expression profiling
Microarray Expression Profiling, supplied by BioRap Technologies Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/microarray+expression+profile+datasets/microarray+expression+profiling/pm28619728-84-0-10
Average 90 stars, based on 1 article reviews
microarray expression profiling - by Bioz Stars, 2026-09
90/100 stars

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Microarray:

Article Title: Activated Notch signaling cascade is correlated with stem cell differentiation toward absorptive progenitors after massive small bowel resection in a rat.
Article Snippet: Genome sequencing library preparations Illumina's Digital Gene Expression (DGE) analysis using Illumina Rat Quad BeadChips was used to determine NOTC-related gene expression profiling in jejunum and ileum. .. Microarray expression profiling was performed in the Genomics Core Facility (BioRap Technologies, Rappaport Research Institute, Technion). .. Total RNA was isolated using a TRIzol (Invitrogen, Carlsbad, CA) extraction protocol with chloroform interphase separation, isopropanol precipitation, and ethanol wash steps.

Article Title: Gene expression dynamics following mithramycin treatment: A possible model for post-chemotherapy cognitive impairment.
Article Snippet: Chemotherapeutic agents are associated with cognitive impairments in 17%75% of the noncentral nervous system (nonCNS) cancer survivors.1 Cognitive impairments include memory disturbance, concentration difficulties and executive function deficits.2 These impairments affect basic everyday cognitive activities and have an overall negative influence on patients’ quality of life.3 Commonly, these patients are also suffering from secondary depression and anxiety, probably due to loss of their previous abilities.4 Children are particularly sensitive and exhibit cognitive deficits years after the chemotherapeutic treatment ended.5 There are objective obstacles in assessing the direct contribution of chemotherapy to cognitive impairments, due to a possible overlap with disease and/or nonchemotherapeutic treatment effects on brain.. This includes cytokine effects, paraneoplastic syndromes, surgery and radiation.6 In most cases there is a lack of records on cognitive functioning before treatment.7 However, brain imaging before and after treatment shows a reduction in the volume of brain areas involved in memory and cognition.7 For example, years after treatment, a lower responsiveness is observed in the frontal cortex and the parahippocampus during the Received: 8 January 2018 | Revised: 23 April 2018 | Accepted: 11 May 2018 DOI: 10.1111/1440-1681.12975

Article Title: The role of intermediate filaments in maintaining integrity and function of intestinal epithelial cells after massive bowel resection in a rat.
Article Snippet: increase in cell apoptosis.. From the total number of 20,000 probes, 16 cytoskeleton-related genes were investigated.. Between these genes, only myosin and tubulin levels were upregulated in SBS compared to sham animals.

Article Title: Cardiac Fibroblast-Induced Pluripotent Stem Cell-Derived Exosomes as a Potential Therapeutic Mean for Heart Failure
Article Snippet: Alkaline phosphatase (AP) was stained using the alkaline phosphatase detection kit (Millipore, Burlington, MS, USA) as per the manufacturer’s instruction [ ]. .. Microarray expression profiling was performed in the Genomics Core Facility (BioRap Technologies, Rappaport Research Institute, Technion, Haifa, Israel). ..

Article Title: The role of branched chain amino acid and tryptophan metabolism in rat's behavioral diversity: Intertwined peripheral and brain effects.
Article Snippet: Laboratory of Psychobiology, Department of Psychiatry, Rambam Medical Center, Tel Aviv University, Tel Aviv, Israel The Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel Behavioral Neuroscience Lab, The Emek Medical Center Afula, Technion-IIT, Haifa, Israel B. Rappaport Faculty of Medicine, Technion-IIT, Haifa, Israel The Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv, Israel

Expressing:

Article Title: Activated Notch signaling cascade is correlated with stem cell differentiation toward absorptive progenitors after massive small bowel resection in a rat.
Article Snippet: Genome sequencing library preparations Illumina's Digital Gene Expression (DGE) analysis using Illumina Rat Quad BeadChips was used to determine NOTC-related gene expression profiling in jejunum and ileum. .. Microarray expression profiling was performed in the Genomics Core Facility (BioRap Technologies, Rappaport Research Institute, Technion). .. Total RNA was isolated using a TRIzol (Invitrogen, Carlsbad, CA) extraction protocol with chloroform interphase separation, isopropanol precipitation, and ethanol wash steps.

Article Title: Gene expression dynamics following mithramycin treatment: A possible model for post-chemotherapy cognitive impairment.
Article Snippet: Chemotherapeutic agents are associated with cognitive impairments in 17%75% of the noncentral nervous system (nonCNS) cancer survivors.1 Cognitive impairments include memory disturbance, concentration difficulties and executive function deficits.2 These impairments affect basic everyday cognitive activities and have an overall negative influence on patients’ quality of life.3 Commonly, these patients are also suffering from secondary depression and anxiety, probably due to loss of their previous abilities.4 Children are particularly sensitive and exhibit cognitive deficits years after the chemotherapeutic treatment ended.5 There are objective obstacles in assessing the direct contribution of chemotherapy to cognitive impairments, due to a possible overlap with disease and/or nonchemotherapeutic treatment effects on brain.. This includes cytokine effects, paraneoplastic syndromes, surgery and radiation.6 In most cases there is a lack of records on cognitive functioning before treatment.7 However, brain imaging before and after treatment shows a reduction in the volume of brain areas involved in memory and cognition.7 For example, years after treatment, a lower responsiveness is observed in the frontal cortex and the parahippocampus during the Received: 8 January 2018 | Revised: 23 April 2018 | Accepted: 11 May 2018 DOI: 10.1111/1440-1681.12975

Article Title: The role of intermediate filaments in maintaining integrity and function of intestinal epithelial cells after massive bowel resection in a rat.
Article Snippet: increase in cell apoptosis.. From the total number of 20,000 probes, 16 cytoskeleton-related genes were investigated.. Between these genes, only myosin and tubulin levels were upregulated in SBS compared to sham animals.

Article Title: Cardiac Fibroblast-Induced Pluripotent Stem Cell-Derived Exosomes as a Potential Therapeutic Mean for Heart Failure
Article Snippet: Alkaline phosphatase (AP) was stained using the alkaline phosphatase detection kit (Millipore, Burlington, MS, USA) as per the manufacturer’s instruction [ ]. .. Microarray expression profiling was performed in the Genomics Core Facility (BioRap Technologies, Rappaport Research Institute, Technion, Haifa, Israel). ..

Article Title: The role of branched chain amino acid and tryptophan metabolism in rat's behavioral diversity: Intertwined peripheral and brain effects.
Article Snippet: Laboratory of Psychobiology, Department of Psychiatry, Rambam Medical Center, Tel Aviv University, Tel Aviv, Israel The Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel Behavioral Neuroscience Lab, The Emek Medical Center Afula, Technion-IIT, Haifa, Israel B. Rappaport Faculty of Medicine, Technion-IIT, Haifa, Israel The Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv, Israel

Sequencing:

Article Title: The role of intermediate filaments in maintaining integrity and function of intestinal epithelial cells after massive bowel resection in a rat.
Article Snippet: increase in cell apoptosis.. From the total number of 20,000 probes, 16 cytoskeleton-related genes were investigated.. Between these genes, only myosin and tubulin levels were upregulated in SBS compared to sham animals.



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Image Search Results


Information of  gene-expression profile datasets  associated with GBM.

Journal: Scientific Reports

Article Title: Discovery of key molecular signatures for diagnosis and therapies of glioblastoma by combining supervised and unsupervised learning approaches

doi: 10.1038/s41598-024-79391-2

Figure Lengend Snippet: Information of gene-expression profile datasets associated with GBM.

Article Snippet: Total 10 microarray gene-expression profile datasets that contained GBM and control samples, were downloaded from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database to explore GBM-causing key genes.

Techniques: Control

Study design flowchart. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure. DEcircRNAs, differentially expressed circRNAs; DEmiRNAs, differentially expressed miRNAs; DEmRNAs, differentially expressed mRNAs

Journal: BMC Medical Genomics

Article Title: Comprehensive analysis of circRNA-miRNA-mRNA network related to angiogenesis in recurrent implantation failure

doi: 10.1186/s12920-024-01944-1

Figure Lengend Snippet: Study design flowchart. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure. DEcircRNAs, differentially expressed circRNAs; DEmiRNAs, differentially expressed miRNAs; DEmRNAs, differentially expressed mRNAs

Article Snippet: CircRNA, miRNA and mRNA microarray expression profile datasets were selected from the National Center of Biotechnology Information Gene Expression Omnibus (NCBI) GEO ( https://www.ncbi.nlm.nih.gov/geo/ ).

Techniques:

Boxplots, volcano plots and Venn diagram of mRNAs for GSE103465. (A) Boxplot of GSE103465. (B) Volcano plots of DEmRNAs based on GSE103465. (C) Venn diagram of mRNAs for GeneCards and GSE103465, where the intersection section is predicted DEmRNAs asscociated with angiogenesis in RIF. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Journal: BMC Medical Genomics

Article Title: Comprehensive analysis of circRNA-miRNA-mRNA network related to angiogenesis in recurrent implantation failure

doi: 10.1186/s12920-024-01944-1

Figure Lengend Snippet: Boxplots, volcano plots and Venn diagram of mRNAs for GSE103465. (A) Boxplot of GSE103465. (B) Volcano plots of DEmRNAs based on GSE103465. (C) Venn diagram of mRNAs for GeneCards and GSE103465, where the intersection section is predicted DEmRNAs asscociated with angiogenesis in RIF. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Article Snippet: CircRNA, miRNA and mRNA microarray expression profile datasets were selected from the National Center of Biotechnology Information Gene Expression Omnibus (NCBI) GEO ( https://www.ncbi.nlm.nih.gov/geo/ ).

Techniques:

Boxplots, volcano plots and Venn diagram of miRNAs for GSE121219. (A) Boxplot of GSE121219. (B) Volcano plots of DEmiRNAs based on GSE121219. (C) Venn diagram of miRNAs for miRDIP and GSE121219, where the intersection section is predicted DEmiRNAs asscociated with angiogenesis in RIF. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Journal: BMC Medical Genomics

Article Title: Comprehensive analysis of circRNA-miRNA-mRNA network related to angiogenesis in recurrent implantation failure

doi: 10.1186/s12920-024-01944-1

Figure Lengend Snippet: Boxplots, volcano plots and Venn diagram of miRNAs for GSE121219. (A) Boxplot of GSE121219. (B) Volcano plots of DEmiRNAs based on GSE121219. (C) Venn diagram of miRNAs for miRDIP and GSE121219, where the intersection section is predicted DEmiRNAs asscociated with angiogenesis in RIF. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Article Snippet: CircRNA, miRNA and mRNA microarray expression profile datasets were selected from the National Center of Biotechnology Information Gene Expression Omnibus (NCBI) GEO ( https://www.ncbi.nlm.nih.gov/geo/ ).

Techniques:

Boxplots, volcano plots and Venn diagram of circRNAs for GSE147442. (A) Boxplot of GSE147442 after standardization. (B) Volcano plots of DEcircRNAs based on GSE147442. (C) Venn diagram of miRNAs for starBase 2.0 and GSE147442, where the intersection section is predicted DEcircRNAs asscociated with angiogenesis in RIF. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Journal: BMC Medical Genomics

Article Title: Comprehensive analysis of circRNA-miRNA-mRNA network related to angiogenesis in recurrent implantation failure

doi: 10.1186/s12920-024-01944-1

Figure Lengend Snippet: Boxplots, volcano plots and Venn diagram of circRNAs for GSE147442. (A) Boxplot of GSE147442 after standardization. (B) Volcano plots of DEcircRNAs based on GSE147442. (C) Venn diagram of miRNAs for starBase 2.0 and GSE147442, where the intersection section is predicted DEcircRNAs asscociated with angiogenesis in RIF. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Article Snippet: CircRNA, miRNA and mRNA microarray expression profile datasets were selected from the National Center of Biotechnology Information Gene Expression Omnibus (NCBI) GEO ( https://www.ncbi.nlm.nih.gov/geo/ ).

Techniques:

Figure 5 CircRNA-miRNA-mRNA regulatory network, which consists of 8 DEcircRNAs, 10 DEmiRNAs and 45 DERNAs. DEcircRNA, differentially expressed circular RNA; DEmiRNA, differentially expressed micro RNA; DERNA, differentially expressed RNA. Arrow-shape nodes: circRNAs, triangle nodes: miRNAs, ellipse-shaped nodes: mRNAs

Journal: BMC Medical Genomics

Article Title: Comprehensive analysis of circRNA-miRNA-mRNA network related to angiogenesis in recurrent implantation failure

doi: 10.1186/s12920-024-01944-1

Figure Lengend Snippet: Figure 5 CircRNA-miRNA-mRNA regulatory network, which consists of 8 DEcircRNAs, 10 DEmiRNAs and 45 DERNAs. DEcircRNA, differentially expressed circular RNA; DEmiRNA, differentially expressed micro RNA; DERNA, differentially expressed RNA. Arrow-shape nodes: circRNAs, triangle nodes: miRNAs, ellipse-shaped nodes: mRNAs

Article Snippet: CircRNA, miRNA and mRNA microarray expression profile datasets were selected from the National Center of Biotechnology Information Gene Expression Omnibus (NCBI) GEO ( https://www.ncbi.nlm.nih.gov/geo/ ).

Techniques:

A PPI network and circRNA–miRNA–hub gene regulatory subnetwork. (A) A PPI network of the fifty-five target genes associated with angiogenesis in RIF. (B) Six hub genes extracted by cytoHubba plug-in. (C) CircRNA–miRNA–hub gene regulatory subnetwork, consisting of 3 circRNAs, 3 miRNAs, and 3 mRNAs. PPI, protein–protein interaction; circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Journal: BMC Medical Genomics

Article Title: Comprehensive analysis of circRNA-miRNA-mRNA network related to angiogenesis in recurrent implantation failure

doi: 10.1186/s12920-024-01944-1

Figure Lengend Snippet: A PPI network and circRNA–miRNA–hub gene regulatory subnetwork. (A) A PPI network of the fifty-five target genes associated with angiogenesis in RIF. (B) Six hub genes extracted by cytoHubba plug-in. (C) CircRNA–miRNA–hub gene regulatory subnetwork, consisting of 3 circRNAs, 3 miRNAs, and 3 mRNAs. PPI, protein–protein interaction; circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Article Snippet: CircRNA, miRNA and mRNA microarray expression profile datasets were selected from the National Center of Biotechnology Information Gene Expression Omnibus (NCBI) GEO ( https://www.ncbi.nlm.nih.gov/geo/ ).

Techniques: