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Biodesign International Inc mega 6 software
Mega 6 Software, supplied by Biodesign International Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mega+6+program/mega+software/pmc09128684-23-26-29
Average 86 stars, based on 1 article reviews
mega 6 software - by Bioz Stars, 2026-09
86/100 stars

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Article Title: Molecular detection and phylogenetic analysis of feline panleukopenia virus in domestic cat population of Mizoram state, India
Article Snippet: The amplified product was purified using the GeneJet Gel Extraction Kit (K0691, Thermo Scientific), cloned in PTZ57R/T vector and sequenced at DNA sequencing facility, Delhi University, South Campus, New Delhi. .. The generated sequences were analyzed using Mega Software (version X; Biodesign Institute, Tempe, USA), and submitted to GenBank ® , NCBI, and the accession numbers were obtained (accession no PP035815 , PP035816 and PP035817 ). ..

Software:

Article Title: Molecular detection and phylogenetic analysis of feline panleukopenia virus in domestic cat population of Mizoram state, India
Article Snippet: The amplified product was purified using the GeneJet Gel Extraction Kit (K0691, Thermo Scientific), cloned in PTZ57R/T vector and sequenced at DNA sequencing facility, Delhi University, South Campus, New Delhi. .. The generated sequences were analyzed using Mega Software (version X; Biodesign Institute, Tempe, USA), and submitted to GenBank ® , NCBI, and the accession numbers were obtained (accession no PP035815 , PP035816 and PP035817 ). ..

Article Title: Sheep-Derived Lactobacillus johnsonii M5 Enhances Immunity and Antioxidant Capacity, Alleviates Diarrhea, and Improves Intestinal Health in Early-Weaned Lambs.
Article Snippet: Sequence similarity values were identified using the BLAST tool version 2.2.26 of the National Center for Biotechnology Information (NCBI, Rockville, MD, USA). .. A phylogenetic tree for nucleotide sequences was constructed based on 16S rRNA gene sequences using MEGA software version 7.0 (The Biodesign Institute, Tempe, AZ, USA). ..

Article Title: Molecular epizootiology of bovine ephemeral fever virus in Iran during 2015 to 2022
Article Snippet: The obtained sequences were assembled using Geneious software (version 2020.2; Biomatters Ltd., Auckland, New Zealand) submitted in the NCBI GenBank ® database, compared to each other and the selected sequences from the world and aligned using Clustal W Multiple Sequence Alignment Program (UCD, Dublin, Ireland). .. 18 Phylogenetic trees were constructed for the all G gene sequences of Iran and selected sequences from the world with Neighbor-joining method provided in MEGA Software (version 7.0; Biodesign Institute, Tempe, USA). ..

Article Title: Encapsulated Bacillus sp. THPS1, a novel thermophilic probiotic, enhances productivity and metabolic health in laying hens
Article Snippet: The obtained nucleotide sequences were compared with those available in the GenBank database using the BLASTN program of the National Center for Biotechnology Information (NCBI) ( http://www.ncbi.nih.gov/ ). .. Subsequently, DNA sequences of similar length were aligned to classify homologous genes, and phylogenetic analysis of the 16S rRNA gene was performed using MEGA software (v.12; Molecular Evolutionary Genetics Analysis, Center for Evolutionary Medicine and Informatics, The Biodesign Institute, USA). ..

Article Title: Encapsulated Bacillus sp. THPS1, a novel thermophilic probiotic, enhances productivity and metabolic health in laying hens.
Article Snippet: The obtained nucleotide sequences were compared with those available in the GenBank database using the BLASTN program of the National Center for Biotechnology Information (NCBI) (http://www.ncbi.nih.gov/). .. Subsequently, DNA sequences of similar length were aligned to classify homologous genes, and phylogenetic analysis of the 16S rRNA gene was performed using MEGA software (v.12; Molecular Evolutionary Genetics Analysis, Center for Evolutionary Medicine and Informatics, The Biodesign Institute, USA). ..

Article Title: Production of Lanhouin—A Fermented Catfish (Clarias gariepinus) Using the Selected Lactiplantibacillus pentosus Probiotic Strain
Article Snippet: The amplified fragments were sequenced using the Sanger method in the Spectrum Compact CE System (Promega, Madison, WI, USA). .. The nucleotide sequences were aligned with the available sequences in the BLASTn (Basic Local Alignment Search Tool nucleotide) database through NCBI blasting (https://blast.ncbi.nlm.nih.gov/Blast.cgi accessed on 4 December 2024) and using MEGA software (version 11.0; Biodesign Institute, Tempe, AZ, USA, Acession no: OK325938.1; RID: N3VUW1MC016) to determine the species of the bacterial strain [63]. ..

Article Title: Genotyping and phylogenetic analysis of Mannheimia haemolytica isolates from cattle and buffaloes of West Azerbaijan, Iran
Article Snippet: .. Phylogenetic analyses were performed using concatenated sequences of the seven MLST loci with MEGA Software (version 11.0; Biodesign Institute, Tempe, USA) to explore the genetic relationships among the M. haemolytica isolates. ..

Construct:

Article Title: Sheep-Derived Lactobacillus johnsonii M5 Enhances Immunity and Antioxidant Capacity, Alleviates Diarrhea, and Improves Intestinal Health in Early-Weaned Lambs.
Article Snippet: Sequence similarity values were identified using the BLAST tool version 2.2.26 of the National Center for Biotechnology Information (NCBI, Rockville, MD, USA). .. A phylogenetic tree for nucleotide sequences was constructed based on 16S rRNA gene sequences using MEGA software version 7.0 (The Biodesign Institute, Tempe, AZ, USA). ..

Article Title: Molecular epizootiology of bovine ephemeral fever virus in Iran during 2015 to 2022
Article Snippet: The obtained sequences were assembled using Geneious software (version 2020.2; Biomatters Ltd., Auckland, New Zealand) submitted in the NCBI GenBank ® database, compared to each other and the selected sequences from the world and aligned using Clustal W Multiple Sequence Alignment Program (UCD, Dublin, Ireland). .. 18 Phylogenetic trees were constructed for the all G gene sequences of Iran and selected sequences from the world with Neighbor-joining method provided in MEGA Software (version 7.0; Biodesign Institute, Tempe, USA). ..



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Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the nucleotide sequences of the partials S genes. The tree was generated by the maximum likelihood method of the software <t>MEGA</t> v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not shown). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols, the Japanese strains prior to 2013 are marked by solid diamond symbols , and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols
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Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the nucleotide sequences of the partials S genes. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not shown). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols, the Japanese strains prior to 2013 are marked by solid diamond symbols , and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols

Journal: SpringerPlus

Article Title: US-like isolates of porcine epidemic diarrhea virus from Japanese outbreaks between 2013 and 2014

doi: 10.1186/s40064-015-1552-z

Figure Lengend Snippet: Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the nucleotide sequences of the partials S genes. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not shown). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols, the Japanese strains prior to 2013 are marked by solid diamond symbols , and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols

Article Snippet: Phylogenetic trees based on the nucleotide sequences of the partial S gene and ORF3 gene were constructed with maximum likelihood method using Hasegawa-Kishino-Yano substitution model with discrete Gamma distribution, and bootstrap tests of 1000 replicates in the MEGA v.6 program.

Techniques: Virus, Generated, Software

Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the ORF3 of PEDV. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not show). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols

Journal: SpringerPlus

Article Title: US-like isolates of porcine epidemic diarrhea virus from Japanese outbreaks between 2013 and 2014

doi: 10.1186/s40064-015-1552-z

Figure Lengend Snippet: Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the ORF3 of PEDV. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not show). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols

Article Snippet: Phylogenetic trees based on the nucleotide sequences of the partial S gene and ORF3 gene were constructed with maximum likelihood method using Hasegawa-Kishino-Yano substitution model with discrete Gamma distribution, and bootstrap tests of 1000 replicates in the MEGA v.6 program.

Techniques: Virus, Generated, Software