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MathWorks Inc algorithms matlab mathworks rrid scr 001622 transfer entropy matlab toolbox 38
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Algorithms Matlab Mathworks Rrid Scr 001622 Transfer Entropy Matlab Toolbox 38, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 2340 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/matlab+software+coding/Database+Toolbox/pmc10038008-85-56-57
Average 96 stars, based on 2340 article reviews

algorithms matlab mathworks rrid scr 001622 transfer entropy matlab toolbox 38 - by Bioz Stars, 2026-09

96/100 stars

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1) Product Images from "Disparate insults relevant to schizophrenia converge on impaired spike synchrony and weaker synaptic interactions in prefrontal local circuits"

Article Title: Disparate insults relevant to schizophrenia converge on impaired spike synchrony and weaker synaptic interactions in prefrontal local circuits

Journal: Current biology : CB

doi: 10.1016/j.cub.2021.10.009

Figure Legend Snippet: KEY RESOURCES TABLE

Techniques Used: Recombinant, Software

Influence of drug condition (A, B; monkeys) and genotype (C, D; mice) on LFP power (A, C) and pairwise phase consistency (PPC) between spikes and LFPs (B, D). LFP signals were convolved with a set of complex Morlet wavelets in the frequency range of 1–100 Hz using the Matlab FieldTrip114 toolbox. After assigning phase angles to each spike (relative to LFP oscillations at a given frequency), PPC is defined as the mean cosine between the phase angles of all possible pairs of spikes, capturing the tendency for spikes to occur at consistent phases of LFP oscillations64. (A, C) Mean LFP power spectra in monkeys (A) and mice (C). LFP power was significantly reduced by blocking NMDAR in monkeys and hemizygous deletion of Dgcr8 in mice (black dots above horizontal axis indicate p < 0.05 between conditions by t-test at each frequency, FDR corrected for the number of tests using the Benjamini-Hochberg method). Error bars indicate SEM over LFP channels (electrodes). The dip at 60 Hz in the monkey power spectra reflects notch filtering. (B, D) Median PPC as a function of frequency in monkeys (B) and mice (D). PPC was significantly reduced by blocking NMDAR in monkeys (NSaline = 960 neurons, NDrug= 763 neurons) and hemizygous deletion of Dgcr8 in mice (NWT = 79 neurons, NDgcr8 = 128 neurons) (black dots above horizontal axis indicate p < 0.05 between conditions by Wilcoxon Rank Sum test at each frequency, FDR corrected for the number of tests using the Benjamini-Hochberg method).

Figure Legend Snippet: Influence of drug condition (A, B; monkeys) and genotype (C, D; mice) on LFP power (A, C) and pairwise phase consistency (PPC) between spikes and LFPs (B, D). LFP signals were convolved with a set of complex Morlet wavelets in the frequency range of 1–100 Hz using the Matlab FieldTrip114 toolbox. After assigning phase angles to each spike (relative to LFP oscillations at a given frequency), PPC is defined as the mean cosine between the phase angles of all possible pairs of spikes, capturing the tendency for spikes to occur at consistent phases of LFP oscillations64. (A, C) Mean LFP power spectra in monkeys (A) and mice (C). LFP power was significantly reduced by blocking NMDAR in monkeys and hemizygous deletion of Dgcr8 in mice (black dots above horizontal axis indicate p < 0.05 between conditions by t-test at each frequency, FDR corrected for the number of tests using the Benjamini-Hochberg method). Error bars indicate SEM over LFP channels (electrodes). The dip at 60 Hz in the monkey power spectra reflects notch filtering. (B, D) Median PPC as a function of frequency in monkeys (B) and mice (D). PPC was significantly reduced by blocking NMDAR in monkeys (NSaline = 960 neurons, NDrug= 763 neurons) and hemizygous deletion of Dgcr8 in mice (NWT = 79 neurons, NDgcr8 = 128 neurons) (black dots above horizontal axis indicate p < 0.05 between conditions by Wilcoxon Rank Sum test at each frequency, FDR corrected for the number of tests using the Benjamini-Hochberg method).

Techniques Used: Blocking Assay

Figure Legend Snippet: KEY RESOURCES TABLE

Techniques Used: Recombinant, Software

other:

Article Title: During natural vision, semantic novelty modulates fixation-related processing in primate cortex
Article Snippet: In the human intracranial dataset, the electrode arrays each contained multiple contacts, which were identified using the iELVis MATLAB toolbox ( ).

Article Title: From statistics to deep learning in single-molecule fluorescence resonance energy transfer analysis.
Article Snippet: MASH-FRET [9,26], a MATLAB-based toolbox, uses the BOBA-FRET’s analysis and simulation framework, while adding workflows for molecule localisation and dynamic characterisation. iSMS [27] and SMART [28] offer graphical interfaces for data analysis and visualisation, and enhance standard HMM by incorporating VB and the Bayesian Information Criterion (BIC) while estimating the number of states.

Software:

Article Title: Alpha‐adrenergic mediated changes in blood pressure variability after hypoxia‐ischaemia in preterm fetal sheep
Article Snippet: .. For beat-to-beat BPV analysis, systolic arterial blood pressure peak amplitudes were extracted using LabVIEW software and imported into a customised physiological data analysis toolbox using MATLAB (MATLAB 2023A; The MathWorks, Inc., Natick, MA, USA) to calculate features of beat-to-beat variability. ..

Clinical Proteomics:

Article Title: Parvalbumin-positive neurons in the medial septum participate in the formation of hippocampal-dependent spatial memory.
Article Snippet: .. The EDF files were exported to MATLAB and then analysis sleep state using an open source MATLAB toolbox (https://data.mendeley.com/datasets/c872f83pdz/4)58 Plasma corticosterone measures Plasma samples were collected approximately 12-15 hours after SD, including from the gentle handling SD group. ..

Article Title: Parvalbumin-positive neurons in the medial septum participate in the formation of hippocampal-dependent spatial memory.
Article Snippet: .. The EDF files were exported to MATLAB and then analysis sleep state using an open source MATLAB toolbox (https://data.mendeley.com/datasets/c872f83pdz/4) Plasma corticosterone measures Plasma samples were collected approximately 12-15 hours after SD, including from the gentle handling SD group. ..

Gentle:

Article Title: Parvalbumin-positive neurons in the medial septum participate in the formation of hippocampal-dependent spatial memory.
Article Snippet: .. The EDF files were exported to MATLAB and then analysis sleep state using an open source MATLAB toolbox (https://data.mendeley.com/datasets/c872f83pdz/4) Plasma corticosterone measures Plasma samples were collected approximately 12-15 hours after SD, including from the gentle handling SD group. ..

Generated:

Article Title: Opposing cortical forces: Alpha slowing and sensorimotor mu acceleration during motor-related BCI training.
Article Snippet: .. Topoplots were generated using the MATLAB toolbox from Víctor Martínez-Cagigal (2025): Topographic EEG/MEG plot (https://www.mathworks.com/matlabcentral/fileexchange/72729-topographic-eeg-meg-plot). https://doi.org/10.1371/journal.pcbi.1014112.g003 PLOS Computational Biology | https://doi.org/10.1371/journal.pcbi.1014112 April 1, 2026 8 / 22 showing a positive association with posterior alpha frequency acceleration with effects ranging from negligible to moderate depending on dataset. ..

Functional Assay:

Article Title: Fronto-Cerebellar Connectivity Disruptions and Functional Reorganization in Friedreich's Ataxia: A Structural and Resting-State fMRI Study.
Article Snippet: .. For functional data, grouplevel analyses were performed using the CONN toolbox in MATLAB (v.R2022a) (Nieto-Castanon and Whitfield-Gabrieli, 2022). ..

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