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massarray platform software  (Sequenom)

 
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    Sequenom massarray platform software
    Massarray Platform Software, supplied by Sequenom, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/massarray%C2%AE+genotyping+data/massarray+platform/pmc06962928-89-12-15
    Average 90 stars, based on 1 article reviews
    massarray platform software - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    other:

    Article Title: BR-FDP-SKIN: Brazilian forensic DNA Skin phenotyping based on machine learning models
    Article Snippet: ction NA Phenotyping (FDP) enables the prediction of different Externally Visible Characteristics (EVCs), air, and eye color, directly from genetic material (1).. The inference of these traits using a limited set of tide Polymorphisms (SNPs) is extremely valuable in forensic investigations, aiding in the identification dividuals at crime scenes or among victims of mass disasters (2; 3; 4).. Multiple studies have mapped ted with hair, eye, and skin color (2; 5; 6; 7; 8; 9; 10; 11; 12; 13; 14; 15; 16).

    Article Title: Identification of a Novel Genetic Variant responsible for Familial Atrial Fibrillation.
    Article Snippet: This is a PDF of an article that has undergone enhancements after acceptance, such as the addition of a cover page and metadata, and formatting for readability.. This version will undergo additional copyediting, typesetting and review before it is published in its final form.. As such, this version is no longer the Accepted Manuscript, but it is not yet the definitive Version of Record; we are providing this early version to give early visibility of the article.

    Article Title: Analysis of MIR155HG gene polymorphisms and ulcerative colitis susceptibility in the Chinese Han Population
    Article Snippet: Four single nucleotide polymorphisms (SNPs) of MIR155HG (rs1893650, rs2282471, rs2829803, and rs2829806) were genotyped using the Sequenom MassARRAY platform.

    Variant Assay:

    Article Title:
    Article Snippet: .. OHSU: Oregon Health & Science University; MassARRAY: Sequenom MassARRAY iPLEX platform; 1KGP: 1000 Genomes Project. a 22 patient DNA samples; b 40 CCL samples and 22 patient DNA samples; c 40 CCL samples; d 40 CCL samples and 6 patient DNA samples analyzed for a single variant in RYR1 ; e 6 patient DNA samples analyzed for 34 variants in RYR1 . ..

    DNA Purification:

    Article Title: Integrating genetic and lifestyle determinants in a risk prediction model for esophageal squamous cell carcinoma in Taiwan.
    Article Snippet: .. Genomic DNA was extracted from peripheral blood using the Puregene DNA Purification Kit (Gentra Systems, Minneapolis, MN, USA) and the resulting DNA was dispensed into 96-well plates (ABgene Limited, Epsom, UK). and samples Samples with concentrations ≥2.5 ng/μl were genotyped using the Sequenom MassARRAY system (with call rate > 95%). ..

    Next-Generation Sequencing:

    Article Title:
    Article Snippet: .. Accuracy studies were performed by comparing the genotypes of the variants determined by the OA-PGx panel with at least one of 2 reference genotyping methods, next-generation sequencing (NGS), and/or Sequenom MassARRAY iPLEX platform (MassARRAY). ..

    Modification:

    Article Title: Midlife insulin resistance and brain beta-amyloid accumulation as predictors of change in late-life cognitive function - A 20-year follow-up study.
    Article Snippet: .. APOE genotype was defined with the MassARRAY System (Sequenom, San Diego, CA, USA) with a modified protocol (Jänis et al., 2004). ..



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    genotype data from sequenom massarray (iplex)  (Sequenom)
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    Sequenom genotype data from sequenom massarray (iplex)
    This figure shows the 4 steps of the SNPflow data analysis wizard. In brief, the first step allows the uploading of either SDS files (ABI 7900HT) or TyperAnalyzer 4.0 <t>(MassARRAY)</t> files. For TyperAnalyzer files, a second input field asks for the name of the result group under which results shall be grouped. The second step checks the validity of the IDs found in the uploaded and reports IDs, which are not found in the study definition and shall thus be deleted. Step 3 converts the found genotype designations to standard genotypes and allows entering the name of the result, the operator name, an optional comment and the rs-number of the SNP in HapMap and the 1000 Genomes Project. This is useful in case that a SNP ID changed between the current dbSNP release and the dbSNP release used in HapMap, as happened for some SNPs. For convenience, the result name is automatically pre-set as HapMap lookup. In multiplex assays, pagination allows navigating through the single SNPs. For quality reasons a manual confirmation of each conversion is required (Checkbox “All settings are correct”). Finally, step 4 confirms the successful analysis and brings the user to the report. Exemplary abbreviation used in this figure: NTC, Non-template control; ER, annulled samples (“error”), i.e. DNA samples present on the plates, but known to be flawed. The IDs of these samples were thus replaced with “ER” in order to avoid data collection for these samples.
    Genotype Data From Sequenom Massarray (Iplex), supplied by Sequenom, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    genotype data from sequenom massarray  (Sequenom)
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    Sequenom genotype data from sequenom massarray
    Validation of 42 SNPs at the RDV2 locus
    Genotype Data From Sequenom Massarray, supplied by Sequenom, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    massarray® genotyping data  (Sequenom)
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    Sequenom massarray® genotyping data
    Validation of 42 SNPs at the RDV2 locus
    Massarray® Genotyping Data, supplied by Sequenom, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    genotype data sequenom massarray platform  (Sequenom)
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    Sequenom genotype data sequenom massarray platform
    Validation of 42 SNPs at the RDV2 locus
    Genotype Data Sequenom Massarray Platform, supplied by Sequenom, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    massarray genotyping data  (Sequenom)
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    Sequenom massarray genotyping data
    Table 1.
    Massarray Genotyping Data, supplied by Sequenom, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Image Search Results


    This figure shows the 4 steps of the SNPflow data analysis wizard. In brief, the first step allows the uploading of either SDS files (ABI 7900HT) or TyperAnalyzer 4.0 (MassARRAY) files. For TyperAnalyzer files, a second input field asks for the name of the result group under which results shall be grouped. The second step checks the validity of the IDs found in the uploaded and reports IDs, which are not found in the study definition and shall thus be deleted. Step 3 converts the found genotype designations to standard genotypes and allows entering the name of the result, the operator name, an optional comment and the rs-number of the SNP in HapMap and the 1000 Genomes Project. This is useful in case that a SNP ID changed between the current dbSNP release and the dbSNP release used in HapMap, as happened for some SNPs. For convenience, the result name is automatically pre-set as HapMap lookup. In multiplex assays, pagination allows navigating through the single SNPs. For quality reasons a manual confirmation of each conversion is required (Checkbox “All settings are correct”). Finally, step 4 confirms the successful analysis and brings the user to the report. Exemplary abbreviation used in this figure: NTC, Non-template control; ER, annulled samples (“error”), i.e. DNA samples present on the plates, but known to be flawed. The IDs of these samples were thus replaced with “ER” in order to avoid data collection for these samples.

    Journal: PLoS ONE

    Article Title: SNPflow: A Lightweight Application for the Processing, Storing and Automatic Quality Checking of Genotyping Assays

    doi: 10.1371/journal.pone.0059508

    Figure Lengend Snippet: This figure shows the 4 steps of the SNPflow data analysis wizard. In brief, the first step allows the uploading of either SDS files (ABI 7900HT) or TyperAnalyzer 4.0 (MassARRAY) files. For TyperAnalyzer files, a second input field asks for the name of the result group under which results shall be grouped. The second step checks the validity of the IDs found in the uploaded and reports IDs, which are not found in the study definition and shall thus be deleted. Step 3 converts the found genotype designations to standard genotypes and allows entering the name of the result, the operator name, an optional comment and the rs-number of the SNP in HapMap and the 1000 Genomes Project. This is useful in case that a SNP ID changed between the current dbSNP release and the dbSNP release used in HapMap, as happened for some SNPs. For convenience, the result name is automatically pre-set as HapMap lookup. In multiplex assays, pagination allows navigating through the single SNPs. For quality reasons a manual confirmation of each conversion is required (Checkbox “All settings are correct”). Finally, step 4 confirms the successful analysis and brings the user to the report. Exemplary abbreviation used in this figure: NTC, Non-template control; ER, annulled samples (“error”), i.e. DNA samples present on the plates, but known to be flawed. The IDs of these samples were thus replaced with “ER” in order to avoid data collection for these samples.

    Article Snippet: SNPflow is a lightweight, intuitive and easily deployable application, which processes genotype data from Sequenom MassARRAY (iPLEX) and ABI 7900HT (TaqMan, KASPar) systems and is extendible to other genotyping methods as well.

    Techniques: Multiplex Assay

    Validation of 42 SNPs at the RDV2 locus

    Journal: BMC Plant Biology

    Article Title: Genetic identification of SNP markers linked to a new grape phylloxera resistant locus in Vitis cinerea for marker-assisted selection

    doi: 10.1186/s12870-018-1590-0

    Figure Lengend Snippet: Validation of 42 SNPs at the RDV2 locus

    Article Snippet: A comparison of the genotype data from Sequenom MassARRAY and the TASSEL SNP calling pipeline was performed to validate SNPs.

    Techniques:

    Genotyping errors detected in F 1 individuals after Sequenom MassARRAY genotyping

    Journal: BMC Plant Biology

    Article Title: Genetic identification of SNP markers linked to a new grape phylloxera resistant locus in Vitis cinerea for marker-assisted selection

    doi: 10.1186/s12870-018-1590-0

    Figure Lengend Snippet: Genotyping errors detected in F 1 individuals after Sequenom MassARRAY genotyping

    Article Snippet: A comparison of the genotype data from Sequenom MassARRAY and the TASSEL SNP calling pipeline was performed to validate SNPs.

    Techniques:

    Table 1.

    Journal: Proceedings of the National Academy of Sciences of the United States of America

    Article Title: Population, genetic, and antigenic diversity of the apicomplexan Eimeria tenella and their relevance to vaccine development

    doi: 10.1073/pnas.1506468112

    Figure Lengend Snippet: Table 1.

    Article Snippet: Returning to the Sequenom MassARRAY genotyping data, we found 46% of all samples submitted for typing to be polyclonal as determined by a multiple SNP identity at one or more loci.

    Techniques: Genome Wide