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LPixel Inc imagej plugins
Imagej Plugins, supplied by LPixel Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/imagej+plugins/imagej+plugins/pmc07016535-192-5-8
Average 90 stars, based on 1 article reviews
imagej plugins - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Derivative Assay:

Article Title: Liquid crystal display device
Article Snippet: The crosstalk coefficient aleak is expressed by the following Formula (2) where a luminance value of each pixel of the first image IM1 emitted in the first direction is Lpixel_P and a luminance value of each pixel of the first image IM1 emitted in the second direction is Lpixel_D. a leak = L pixel _ D / L pixel _ P ( 2 ) The crosstalk coefficient aleak may be obtained from light distribution characteristics of the first backlight 21 as illustrated in FIG. 4.

Article Title: SLK is mutated in individuals with a neurodevelopmental disorder
Article Snippet: Error bars represent stdev. (j) The directional orientation of Golgi from 100 cells was assessed and presented as percent mean polarization with error bars representing stdev of 3 replicates. (k) The direction of orientation (paralellness) of microtubules was measured using the LPX ImageJ plugin ( https://lpixel.net/services/research/lpixel-imagej-plugins/ ) ; and data presented as mean and stdev of images of 100 cells.

Article Title: Plant chromosome polytenization contributes to suppression of root growth in high polyploids.
Article Snippet: Autopolyploidization, which refers to a polyploidization via genome duplication without hybridization, promotes growth in autotetraploids, but suppresses growth in high polyploids (autohexaploids or auto-octoploids).. The mechanism underlying this growth suppression (i.e. ‘high-ploidy syndrome’) has not been comprehensively characterized.. In this study, we conducted a kinematic analysis of the root apical meristem cells in Arabidopsis thaliana autopolyploids (diploid, tetraploid, hexaploid, and octoploid) to determine the effects of the progression of genome duplication on root growth.

Article Title: Plant chromosome polytenization contributes to suppression of root growth in high polyploids
Article Snippet: After the elongation rate was determined, the length of the cortical cells and the inner and outer radius of the cortical cell file were examined using the ImageJ Plugin ‘Root Cell Size Measurer’ (in Ij Tool; LPixel, Tokyo, Japan) as described by Iwamoto et al. (2006) .

Article Title: Evaluation of motion artifacts reduction software that compensate for respiratory movements in the craniocaudal direction during abdominal cone-beam computed tomography.
Article Snippet: We acquired cone-beam computed tomography (CBCT) images of a locally made contrast-enhanced hepatic artery phantom under various conditions, both with the phantom still, and while moving it from the cranial to the caudal position.. All the motion CBCT images were processed with and without motion artifacts reduction software (MARS).. We calculated some quantitative similarity indexes between the still CBCT images (no-motion) and the motion CBCT images both processed with MARS (MARS ON) and without MARS (MARS OFF).

Article Title: Machine learning and feature analysis of the cortical microtubule organization of Arabidopsis cotyledon pavement cells.
Article Snippet: The measurement of cytoskeletal features can provide valuable insights into cell biology.. In recent years, digital image analysis of cytoskeletal features has become an important research tool for quantitative evaluation of cytoskeleton organization.. In this study, we examined the utility of a supervised machine learning approach with digital image analysis to distinguish different cellular organizational patterns.

Control:

Article Title: Liquid crystal display device
Article Snippet: The crosstalk coefficient aleak is expressed by the following Formula (2) where a luminance value of each pixel of the first image IM1 emitted in the first direction is Lpixel_P and a luminance value of each pixel of the first image IM1 emitted in the second direction is Lpixel_D. a leak = L pixel _ D / L pixel _ P ( 2 ) The crosstalk coefficient aleak may be obtained from light distribution characteristics of the first backlight 21 as illustrated in FIG. 4.

Article Title: SLK is mutated in individuals with a neurodevelopmental disorder
Article Snippet: Error bars represent stdev. (j) The directional orientation of Golgi from 100 cells was assessed and presented as percent mean polarization with error bars representing stdev of 3 replicates. (k) The direction of orientation (paralellness) of microtubules was measured using the LPX ImageJ plugin ( https://lpixel.net/services/research/lpixel-imagej-plugins/ ) ; and data presented as mean and stdev of images of 100 cells.

Article Title: Plant chromosome polytenization contributes to suppression of root growth in high polyploids.
Article Snippet: Autopolyploidization, which refers to a polyploidization via genome duplication without hybridization, promotes growth in autotetraploids, but suppresses growth in high polyploids (autohexaploids or auto-octoploids).. The mechanism underlying this growth suppression (i.e. ‘high-ploidy syndrome’) has not been comprehensively characterized.. In this study, we conducted a kinematic analysis of the root apical meristem cells in Arabidopsis thaliana autopolyploids (diploid, tetraploid, hexaploid, and octoploid) to determine the effects of the progression of genome duplication on root growth.

Article Title: Plant chromosome polytenization contributes to suppression of root growth in high polyploids
Article Snippet: After the elongation rate was determined, the length of the cortical cells and the inner and outer radius of the cortical cell file were examined using the ImageJ Plugin ‘Root Cell Size Measurer’ (in Ij Tool; LPixel, Tokyo, Japan) as described by Iwamoto et al. (2006) .

Article Title: Evaluation of motion artifacts reduction software that compensate for respiratory movements in the craniocaudal direction during abdominal cone-beam computed tomography.
Article Snippet: We acquired cone-beam computed tomography (CBCT) images of a locally made contrast-enhanced hepatic artery phantom under various conditions, both with the phantom still, and while moving it from the cranial to the caudal position.. All the motion CBCT images were processed with and without motion artifacts reduction software (MARS).. We calculated some quantitative similarity indexes between the still CBCT images (no-motion) and the motion CBCT images both processed with MARS (MARS ON) and without MARS (MARS OFF).

Article Title: Machine learning and feature analysis of the cortical microtubule organization of Arabidopsis cotyledon pavement cells.
Article Snippet: The measurement of cytoskeletal features can provide valuable insights into cell biology.. In recent years, digital image analysis of cytoskeletal features has become an important research tool for quantitative evaluation of cytoskeleton organization.. In this study, we examined the utility of a supervised machine learning approach with digital image analysis to distinguish different cellular organizational patterns.

Cell Migration Assay:

Article Title: Liquid crystal display device
Article Snippet: The crosstalk coefficient aleak is expressed by the following Formula (2) where a luminance value of each pixel of the first image IM1 emitted in the first direction is Lpixel_P and a luminance value of each pixel of the first image IM1 emitted in the second direction is Lpixel_D. a leak = L pixel _ D / L pixel _ P ( 2 ) The crosstalk coefficient aleak may be obtained from light distribution characteristics of the first backlight 21 as illustrated in FIG. 4.

Article Title: SLK is mutated in individuals with a neurodevelopmental disorder
Article Snippet: Error bars represent stdev. (j) The directional orientation of Golgi from 100 cells was assessed and presented as percent mean polarization with error bars representing stdev of 3 replicates. (k) The direction of orientation (paralellness) of microtubules was measured using the LPX ImageJ plugin ( https://lpixel.net/services/research/lpixel-imagej-plugins/ ) ; and data presented as mean and stdev of images of 100 cells.

Article Title: Plant chromosome polytenization contributes to suppression of root growth in high polyploids.
Article Snippet: Autopolyploidization, which refers to a polyploidization via genome duplication without hybridization, promotes growth in autotetraploids, but suppresses growth in high polyploids (autohexaploids or auto-octoploids).. The mechanism underlying this growth suppression (i.e. ‘high-ploidy syndrome’) has not been comprehensively characterized.. In this study, we conducted a kinematic analysis of the root apical meristem cells in Arabidopsis thaliana autopolyploids (diploid, tetraploid, hexaploid, and octoploid) to determine the effects of the progression of genome duplication on root growth.

Article Title: Plant chromosome polytenization contributes to suppression of root growth in high polyploids
Article Snippet: After the elongation rate was determined, the length of the cortical cells and the inner and outer radius of the cortical cell file were examined using the ImageJ Plugin ‘Root Cell Size Measurer’ (in Ij Tool; LPixel, Tokyo, Japan) as described by Iwamoto et al. (2006) .

Article Title: Evaluation of motion artifacts reduction software that compensate for respiratory movements in the craniocaudal direction during abdominal cone-beam computed tomography.
Article Snippet: We acquired cone-beam computed tomography (CBCT) images of a locally made contrast-enhanced hepatic artery phantom under various conditions, both with the phantom still, and while moving it from the cranial to the caudal position.. All the motion CBCT images were processed with and without motion artifacts reduction software (MARS).. We calculated some quantitative similarity indexes between the still CBCT images (no-motion) and the motion CBCT images both processed with MARS (MARS ON) and without MARS (MARS OFF).

Article Title: Machine learning and feature analysis of the cortical microtubule organization of Arabidopsis cotyledon pavement cells.
Article Snippet: The measurement of cytoskeletal features can provide valuable insights into cell biology.. In recent years, digital image analysis of cytoskeletal features has become an important research tool for quantitative evaluation of cytoskeleton organization.. In this study, we examined the utility of a supervised machine learning approach with digital image analysis to distinguish different cellular organizational patterns.

Migration:

Article Title: Liquid crystal display device
Article Snippet: The crosstalk coefficient aleak is expressed by the following Formula (2) where a luminance value of each pixel of the first image IM1 emitted in the first direction is Lpixel_P and a luminance value of each pixel of the first image IM1 emitted in the second direction is Lpixel_D. a leak = L pixel _ D / L pixel _ P ( 2 ) The crosstalk coefficient aleak may be obtained from light distribution characteristics of the first backlight 21 as illustrated in FIG. 4.

Article Title: SLK is mutated in individuals with a neurodevelopmental disorder
Article Snippet: Error bars represent stdev. (j) The directional orientation of Golgi from 100 cells was assessed and presented as percent mean polarization with error bars representing stdev of 3 replicates. (k) The direction of orientation (paralellness) of microtubules was measured using the LPX ImageJ plugin ( https://lpixel.net/services/research/lpixel-imagej-plugins/ ) ; and data presented as mean and stdev of images of 100 cells.

Article Title: Plant chromosome polytenization contributes to suppression of root growth in high polyploids.
Article Snippet: Autopolyploidization, which refers to a polyploidization via genome duplication without hybridization, promotes growth in autotetraploids, but suppresses growth in high polyploids (autohexaploids or auto-octoploids).. The mechanism underlying this growth suppression (i.e. ‘high-ploidy syndrome’) has not been comprehensively characterized.. In this study, we conducted a kinematic analysis of the root apical meristem cells in Arabidopsis thaliana autopolyploids (diploid, tetraploid, hexaploid, and octoploid) to determine the effects of the progression of genome duplication on root growth.

Article Title: Plant chromosome polytenization contributes to suppression of root growth in high polyploids
Article Snippet: After the elongation rate was determined, the length of the cortical cells and the inner and outer radius of the cortical cell file were examined using the ImageJ Plugin ‘Root Cell Size Measurer’ (in Ij Tool; LPixel, Tokyo, Japan) as described by Iwamoto et al. (2006) .

Article Title: Evaluation of motion artifacts reduction software that compensate for respiratory movements in the craniocaudal direction during abdominal cone-beam computed tomography.
Article Snippet: We acquired cone-beam computed tomography (CBCT) images of a locally made contrast-enhanced hepatic artery phantom under various conditions, both with the phantom still, and while moving it from the cranial to the caudal position.. All the motion CBCT images were processed with and without motion artifacts reduction software (MARS).. We calculated some quantitative similarity indexes between the still CBCT images (no-motion) and the motion CBCT images both processed with MARS (MARS ON) and without MARS (MARS OFF).

Article Title: Machine learning and feature analysis of the cortical microtubule organization of Arabidopsis cotyledon pavement cells.
Article Snippet: The measurement of cytoskeletal features can provide valuable insights into cell biology.. In recent years, digital image analysis of cytoskeletal features has become an important research tool for quantitative evaluation of cytoskeleton organization.. In this study, we examined the utility of a supervised machine learning approach with digital image analysis to distinguish different cellular organizational patterns.

Software:

Article Title: Liquid crystal display device
Article Snippet: The crosstalk coefficient aleak is expressed by the following Formula (2) where a luminance value of each pixel of the first image IM1 emitted in the first direction is Lpixel_P and a luminance value of each pixel of the first image IM1 emitted in the second direction is Lpixel_D. a leak = L pixel _ D / L pixel _ P ( 2 ) The crosstalk coefficient aleak may be obtained from light distribution characteristics of the first backlight 21 as illustrated in FIG. 4.

Article Title: SLK is mutated in individuals with a neurodevelopmental disorder
Article Snippet: Error bars represent stdev. (j) The directional orientation of Golgi from 100 cells was assessed and presented as percent mean polarization with error bars representing stdev of 3 replicates. (k) The direction of orientation (paralellness) of microtubules was measured using the LPX ImageJ plugin ( https://lpixel.net/services/research/lpixel-imagej-plugins/ ) ; and data presented as mean and stdev of images of 100 cells.

Article Title: Plant chromosome polytenization contributes to suppression of root growth in high polyploids.
Article Snippet: Autopolyploidization, which refers to a polyploidization via genome duplication without hybridization, promotes growth in autotetraploids, but suppresses growth in high polyploids (autohexaploids or auto-octoploids).. The mechanism underlying this growth suppression (i.e. ‘high-ploidy syndrome’) has not been comprehensively characterized.. In this study, we conducted a kinematic analysis of the root apical meristem cells in Arabidopsis thaliana autopolyploids (diploid, tetraploid, hexaploid, and octoploid) to determine the effects of the progression of genome duplication on root growth.

Article Title: Plant chromosome polytenization contributes to suppression of root growth in high polyploids
Article Snippet: After the elongation rate was determined, the length of the cortical cells and the inner and outer radius of the cortical cell file were examined using the ImageJ Plugin ‘Root Cell Size Measurer’ (in Ij Tool; LPixel, Tokyo, Japan) as described by Iwamoto et al. (2006) .

Article Title: Evaluation of motion artifacts reduction software that compensate for respiratory movements in the craniocaudal direction during abdominal cone-beam computed tomography.
Article Snippet: We acquired cone-beam computed tomography (CBCT) images of a locally made contrast-enhanced hepatic artery phantom under various conditions, both with the phantom still, and while moving it from the cranial to the caudal position.. All the motion CBCT images were processed with and without motion artifacts reduction software (MARS).. We calculated some quantitative similarity indexes between the still CBCT images (no-motion) and the motion CBCT images both processed with MARS (MARS ON) and without MARS (MARS OFF).

Article Title: Machine learning and feature analysis of the cortical microtubule organization of Arabidopsis cotyledon pavement cells.
Article Snippet: The measurement of cytoskeletal features can provide valuable insights into cell biology.. In recent years, digital image analysis of cytoskeletal features has become an important research tool for quantitative evaluation of cytoskeleton organization.. In this study, we examined the utility of a supervised machine learning approach with digital image analysis to distinguish different cellular organizational patterns.



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Quantification of wound assay, Golgi appearance and microtubule distribution in patient-derived fibroblasts compared to control . (a) Representative images of sub-confluent fibroblast cells derived from either the index individual in Family 1 (IV:1) or control cell lines at 0 h of wound-induced cell migration assay. Scale bar: 1000 μm. (b) Wound closure was followed serially for 29 h during which a significant difference in cell migration was observed between the two cell lines. Scale bar: 1000 μm. (c) Percent wound closure was evaluated up to 29 h. (d) The remaining area of the wound was measured in μm 2 . The percent wound closure and area of the wound were measured using the <t>ImageJ</t> <t>plugin</t> Wound healing size tool image tool analysis ( https://github.com/AlejandraArnedo/Wound-healing-size-tool/wiki ). Data from 50 cells were collected and analysed. (e) Control cells showing perinuclear compact and polarized Golgi apparatus that are directed toward the migrating wound edge. (f) IV:1-derived fibroblast cells depicting a dispersed and non-polarized (oriented) Golgi apparatus towards the migrating/wound edge. (g) A representative image of normally polarized and parallel orientated microtubules in control cells. (h) A representative image of individual IV:1-derived fibroblast cells showing an un-polarized chaotic microtubule distribution; microtubules labelled with α-tubulin (green) and the centrosome is labelled with Pericentrin (orange) antibodies. (i) The total area of Golgi from 100 cells was measured using the ImageJ software. Error bars represent stdev. (j) The directional orientation of Golgi from 100 cells was assessed and presented as percent mean polarization with error bars representing stdev of 3 replicates. (k) The direction of orientation (paralellness) of microtubules was measured using the <t>LPX</t> ImageJ plugin ( https://lpixel.net/services/research/lpixel-imagej-plugins/ ) ; and data presented as mean and stdev of images of 100 cells. Data from 50 cells were collected and analysed and p-value was calculated based on Welch's t-test for (c, d, i, j and k). The red squares represent datapoints collected from control sample, the green circles represent datapoints collected from the patient sample (IV:1). The horizontal line represents the mean.
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Image Search Results


Quantification of wound assay, Golgi appearance and microtubule distribution in patient-derived fibroblasts compared to control . (a) Representative images of sub-confluent fibroblast cells derived from either the index individual in Family 1 (IV:1) or control cell lines at 0 h of wound-induced cell migration assay. Scale bar: 1000 μm. (b) Wound closure was followed serially for 29 h during which a significant difference in cell migration was observed between the two cell lines. Scale bar: 1000 μm. (c) Percent wound closure was evaluated up to 29 h. (d) The remaining area of the wound was measured in μm 2 . The percent wound closure and area of the wound were measured using the ImageJ plugin Wound healing size tool image tool analysis ( https://github.com/AlejandraArnedo/Wound-healing-size-tool/wiki ). Data from 50 cells were collected and analysed. (e) Control cells showing perinuclear compact and polarized Golgi apparatus that are directed toward the migrating wound edge. (f) IV:1-derived fibroblast cells depicting a dispersed and non-polarized (oriented) Golgi apparatus towards the migrating/wound edge. (g) A representative image of normally polarized and parallel orientated microtubules in control cells. (h) A representative image of individual IV:1-derived fibroblast cells showing an un-polarized chaotic microtubule distribution; microtubules labelled with α-tubulin (green) and the centrosome is labelled with Pericentrin (orange) antibodies. (i) The total area of Golgi from 100 cells was measured using the ImageJ software. Error bars represent stdev. (j) The directional orientation of Golgi from 100 cells was assessed and presented as percent mean polarization with error bars representing stdev of 3 replicates. (k) The direction of orientation (paralellness) of microtubules was measured using the LPX ImageJ plugin ( https://lpixel.net/services/research/lpixel-imagej-plugins/ ) ; and data presented as mean and stdev of images of 100 cells. Data from 50 cells were collected and analysed and p-value was calculated based on Welch's t-test for (c, d, i, j and k). The red squares represent datapoints collected from control sample, the green circles represent datapoints collected from the patient sample (IV:1). The horizontal line represents the mean.

Journal: eBioMedicine

Article Title: SLK is mutated in individuals with a neurodevelopmental disorder

doi: 10.1016/j.ebiom.2025.105725

Figure Lengend Snippet: Quantification of wound assay, Golgi appearance and microtubule distribution in patient-derived fibroblasts compared to control . (a) Representative images of sub-confluent fibroblast cells derived from either the index individual in Family 1 (IV:1) or control cell lines at 0 h of wound-induced cell migration assay. Scale bar: 1000 μm. (b) Wound closure was followed serially for 29 h during which a significant difference in cell migration was observed between the two cell lines. Scale bar: 1000 μm. (c) Percent wound closure was evaluated up to 29 h. (d) The remaining area of the wound was measured in μm 2 . The percent wound closure and area of the wound were measured using the ImageJ plugin Wound healing size tool image tool analysis ( https://github.com/AlejandraArnedo/Wound-healing-size-tool/wiki ). Data from 50 cells were collected and analysed. (e) Control cells showing perinuclear compact and polarized Golgi apparatus that are directed toward the migrating wound edge. (f) IV:1-derived fibroblast cells depicting a dispersed and non-polarized (oriented) Golgi apparatus towards the migrating/wound edge. (g) A representative image of normally polarized and parallel orientated microtubules in control cells. (h) A representative image of individual IV:1-derived fibroblast cells showing an un-polarized chaotic microtubule distribution; microtubules labelled with α-tubulin (green) and the centrosome is labelled with Pericentrin (orange) antibodies. (i) The total area of Golgi from 100 cells was measured using the ImageJ software. Error bars represent stdev. (j) The directional orientation of Golgi from 100 cells was assessed and presented as percent mean polarization with error bars representing stdev of 3 replicates. (k) The direction of orientation (paralellness) of microtubules was measured using the LPX ImageJ plugin ( https://lpixel.net/services/research/lpixel-imagej-plugins/ ) ; and data presented as mean and stdev of images of 100 cells. Data from 50 cells were collected and analysed and p-value was calculated based on Welch's t-test for (c, d, i, j and k). The red squares represent datapoints collected from control sample, the green circles represent datapoints collected from the patient sample (IV:1). The horizontal line represents the mean.

Article Snippet: Error bars represent stdev. (j) The directional orientation of Golgi from 100 cells was assessed and presented as percent mean polarization with error bars representing stdev of 3 replicates. (k) The direction of orientation (paralellness) of microtubules was measured using the LPX ImageJ plugin ( https://lpixel.net/services/research/lpixel-imagej-plugins/ ) ; and data presented as mean and stdev of images of 100 cells.

Techniques: Derivative Assay, Control, Cell Migration Assay, Migration, Software