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heatmap function  (RStudio)

 
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    Structured Review

    RStudio heatmap function
    Profiling of mineral elements detected in the germinated brown rice treated with different doses of Illite. The <t>heatmap</t> was created using the heatmap function in RStudio. Quantitative data represents the means±SD.
    Heatmap Function, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/heatmaps/heatmap+function/pmc11043867-175-6-9
    Average 90 stars, based on 1 article reviews
    heatmap function - by Bioz Stars, 2026-10
    90/100 stars

    Images

    1) Product Images from "Effect of illite pretreatment on germinated Brown rice with Special Reference to amino acids, antioxidants, texture, and mineral elements"

    Article Title: Effect of illite pretreatment on germinated Brown rice with Special Reference to amino acids, antioxidants, texture, and mineral elements

    Journal: Heliyon

    doi: 10.1016/j.heliyon.2024.e28843

    Profiling of mineral elements detected in the germinated brown rice treated with different doses of Illite. The heatmap was created using the heatmap function in RStudio. Quantitative data represents the means±SD.
    Figure Legend Snippet: Profiling of mineral elements detected in the germinated brown rice treated with different doses of Illite. The heatmap was created using the heatmap function in RStudio. Quantitative data represents the means±SD.

    Techniques Used:

    Heatmap indicating the level of amino acids in germinated brown rice when treated with Illite. The heatmap was created using the heatmap function in RStudio. The quantitative value represent the average of at least two replicates.
    Figure Legend Snippet: Heatmap indicating the level of amino acids in germinated brown rice when treated with Illite. The heatmap was created using the heatmap function in RStudio. The quantitative value represent the average of at least two replicates.

    Techniques Used:

    Related Articles

    Generated:

    Article Title: T505A variant of ETV5 promotes proliferation of precursor B cells in a mouse model of acute lymphoblastic leukemia
    Article Snippet: .. Heat maps and volcano plots were generated using the heatmap function in RStudio v4.3.2. .. Statistical analysis was performed using Prism 10 (Graphpad, San Diego, CA) based on independent biological replicate experiments.

    Article Title: Antibiotic Resistance Genes and Microbiota in Brassica oleracea var. acephala Cultivated in South Korea: Potential for Resistance Transmission
    Article Snippet: .. Heatmap analysis was generated using RStudio, and LEfSe analysis was conducted at https://huttenhower.sph.harvard.edu/lefse/ ( p < 0.05 and LDA score >2.0). ..

    Marker:

    Article Title: Chip collection of hepatocellular carcinoma based on O 2 heterogeneity from patient tissue
    Article Snippet: .. The results are presented as Log 2 Fold change values with normalization to day 0, which are visualized using the heatmap function in RStudio ( n = 3 biological replicates). d These findings are further supported by elevated marker protein expression of hypoxia (CAIX) and drug resistance (ABCB1) in hypoxic conditions compared to normoxia. ..

    Article Title: Chip collection of hepatocellular carcinoma based on O 2 heterogeneity from patient tissue.
    Article Snippet: .. The results are presented as Log2Fold change values with normalization to day 0, which are visualized using the heatmap function in RStudio (n = 3 biological replicates). d These findings are further supported by elevated marker protein expression of hypoxia (CAIX) and drug resistance (ABCB1) in hypoxic conditions compared to normoxia. ..

    Expressing:

    Article Title: Chip collection of hepatocellular carcinoma based on O 2 heterogeneity from patient tissue
    Article Snippet: .. The results are presented as Log 2 Fold change values with normalization to day 0, which are visualized using the heatmap function in RStudio ( n = 3 biological replicates). d These findings are further supported by elevated marker protein expression of hypoxia (CAIX) and drug resistance (ABCB1) in hypoxic conditions compared to normoxia. ..

    Article Title: Chip collection of hepatocellular carcinoma based on O 2 heterogeneity from patient tissue.
    Article Snippet: .. The results are presented as Log2Fold change values with normalization to day 0, which are visualized using the heatmap function in RStudio (n = 3 biological replicates). d These findings are further supported by elevated marker protein expression of hypoxia (CAIX) and drug resistance (ABCB1) in hypoxic conditions compared to normoxia. ..

    other:

    Article Title: IP-to-MS: An Unbiased Workflow for Antigen Profiling.
    Article Snippet: The resultant spreadsheet was passed to R Studio and plotted using the Heatmap function and the ComplexHeatmap, circlize, and ggplot2 libraries.

    Article Title: Using L. minor and C. elegans to assess the ecotoxicity of real-life contaminated soil samples and their remediation by clay- and carbon-based sorbents
    Article Snippet: Hierarchical clustering was performed on centered and scaled (μ=0, σ=1) subset data (samples 45, 24, 37, 27, 29, 9, 30, 21) based on the average of experimental replicates with Euclidean distance measure and average linkage, and the results were visualized with a heatmap analysis performed in RStudio running R version 4.3.0 using the “pheatmap” library.



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    Image Search Results


    Characterization of cHep. A. Direct differentiation of cryopreserved pre-cHep using a protocol equivalent to 3D PHH spheroid formation. B. Representative images of 3D PHH and cHep. C. Principal component analysis (PCA) plot including cHep generated from day 30 (D30) J03, J06, and J13 L4 pre-cHep, 3D PHH, and published hepatocyte-like cells (HLC). D. Heatmap showing expression of 264 liver-enriched genes. E–H. Distance-based similarity scores based on gene expression associated with xenobiotic metabolism (E), amino acid biosynthesis (F), bile acid biosynthesis (G), and the urea cycle (H). I. Immunofluorescence staining for albumin, HNF4α, CYP2E1, and ASGR1. J. Cholyl-lysyl-fluorescein (CLF) staining.

    Journal: bioRxiv

    Article Title: Precursor of chemically expanded hepatocytes (pre-cHep) with 1-million-fold expansion potential and liver repopulation capacity

    doi: 10.64898/2026.05.15.725446

    Figure Lengend Snippet: Characterization of cHep. A. Direct differentiation of cryopreserved pre-cHep using a protocol equivalent to 3D PHH spheroid formation. B. Representative images of 3D PHH and cHep. C. Principal component analysis (PCA) plot including cHep generated from day 30 (D30) J03, J06, and J13 L4 pre-cHep, 3D PHH, and published hepatocyte-like cells (HLC). D. Heatmap showing expression of 264 liver-enriched genes. E–H. Distance-based similarity scores based on gene expression associated with xenobiotic metabolism (E), amino acid biosynthesis (F), bile acid biosynthesis (G), and the urea cycle (H). I. Immunofluorescence staining for albumin, HNF4α, CYP2E1, and ASGR1. J. Cholyl-lysyl-fluorescein (CLF) staining.

    Article Snippet: Hierarchical clustering and gene expression heatmap analysis of 264 liver-enriched genes from Human Protein Atlas (gene list in Supplementary Table S3) also showed that D30 cHep clustered closely with 3D PHH, although expression of some genes remained lower than in uncultured PHH and liver samples ( ).

    Techniques: Generated, Expressing, Gene Expression, Immunofluorescence, Staining

    Gene expression analysis of HLC. Distance-based similarity score and gene expression heatmap with KEGG gene sets: Fatty acid metabolism (A, D), Retinol metabolism (B, E) and Complement coagulation cascade (C, F).

    Journal: bioRxiv

    Article Title: Precursor of chemically expanded hepatocytes (pre-cHep) with 1-million-fold expansion potential and liver repopulation capacity

    doi: 10.64898/2026.05.15.725446

    Figure Lengend Snippet: Gene expression analysis of HLC. Distance-based similarity score and gene expression heatmap with KEGG gene sets: Fatty acid metabolism (A, D), Retinol metabolism (B, E) and Complement coagulation cascade (C, F).

    Article Snippet: Hierarchical clustering and gene expression heatmap analysis of 264 liver-enriched genes from Human Protein Atlas (gene list in Supplementary Table S3) also showed that D30 cHep clustered closely with 3D PHH, although expression of some genes remained lower than in uncultured PHH and liver samples ( ).

    Techniques: Gene Expression, Coagulation