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function heatmap.2  (RStudio)

 
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    RStudio function heatmap.2
    Function Heatmap.2, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/heatmap/heatmap+2+function/pm31616965-58-9-12
    Average 90 stars, based on 1 article reviews
    function heatmap.2 - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    other:

    Article Title: Fecal bile acid dysmetabolism and reduced ursodeoxycholic acid correlate with novel microbial signatures in feline chronic kidney disease
    Article Snippet: Additional fecal bile acid concentration heatmap generation was performed in R Studio with the heatmap.2 function from the gplots package (v3.1.3) and hierarchical clustering performed with the hclust function.

    Article Title: Understanding emotional and health indicators underlying the burnout risk of healthcare workers.
    Article Snippet: In this study, correlation analysis was performed using Spearman Rank Correlation, with the RStudio stats package’s cor function ("method = spearman"), to obtain the correlation scores, and the gplots package’s heatmap.2 function was used to visualize the relationship between variables based on these scores.

    Article Title: Leiomodin 2 neonatal dilated cardiomyopathy mutation results in altered actin gene signatures and cardiomyocyte dysfunction
    Article Snippet: Differentially expressed genes were calculated using DESeq2, and heatmaps were generated using heatmap.2 plugin in RStudio packages.

    Article Title: Integrated faecal microbiota and blood metabolic changes following different dietary zinc oxide levels in weaned piglets.
    Article Snippet: Pearson’s test with false discovery rate P-value correction was used to determine significance by using the corr.test function and plotted using the heatmap.2 function from the R-package gplots (RStudio, R).

    Article Title: Microbial community variations in adult Hyalomma dromedarii ticks from single locations in Saudi Arabia and Tunisia
    Article Snippet: Later on, the resulting data were used to construct a heatmap using the “ heatmap.2 ” function in RStudio ( ).

    Article Title: Differential Impact of Simultaneous or Sequential Coinfections With Borrelia afzelii and Tick-Borne Encephalitis Virus on the Ixodes ricinus Microbiota
    Article Snippet: The resulting data were used to construct the heatmap with the ‘ heatmap.2 ' function from gplots package [ ] implemented in RStudio environment [ ].

    Software:

    Article Title: Genomic characterization of Leishmania ( V. ) braziliensis associated with antimony therapeutic failure and variable in vitro tolerance to amphotericin B
    Article Snippet: .. A comparative matrix of relative ploidy for the 13 isolates was created, and it was visualized as a Heatmap using the ggplot and heatmap2 packages of R Statistical Software v4.3.0 and RStudio v2023.03.1 . ..

    Article Title: Genomic characterization of Leishmania (V.) braziliensis associated with antimony therapeutic failure and variable in vitro tolerance to amphotericin B.
    Article Snippet: .. A comparative matrix of relative ploidy for the 13 isolates was created, and it was visualized as a Heatmap using the ggplot and heatmap2 packages of R Statistical Software v4.3.0 and RStudio v2023.03.139. ..



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    Image Search Results


    Characterization of cHep. A. Direct differentiation of cryopreserved pre-cHep using a protocol equivalent to 3D PHH spheroid formation. B. Representative images of 3D PHH and cHep. C. Principal component analysis (PCA) plot including cHep generated from day 30 (D30) J03, J06, and J13 L4 pre-cHep, 3D PHH, and published hepatocyte-like cells (HLC). D. Heatmap showing expression of 264 liver-enriched genes. E–H. Distance-based similarity scores based on gene expression associated with xenobiotic metabolism (E), amino acid biosynthesis (F), bile acid biosynthesis (G), and the urea cycle (H). I. Immunofluorescence staining for albumin, HNF4α, CYP2E1, and ASGR1. J. Cholyl-lysyl-fluorescein (CLF) staining.

    Journal: bioRxiv

    Article Title: Precursor of chemically expanded hepatocytes (pre-cHep) with 1-million-fold expansion potential and liver repopulation capacity

    doi: 10.64898/2026.05.15.725446

    Figure Lengend Snippet: Characterization of cHep. A. Direct differentiation of cryopreserved pre-cHep using a protocol equivalent to 3D PHH spheroid formation. B. Representative images of 3D PHH and cHep. C. Principal component analysis (PCA) plot including cHep generated from day 30 (D30) J03, J06, and J13 L4 pre-cHep, 3D PHH, and published hepatocyte-like cells (HLC). D. Heatmap showing expression of 264 liver-enriched genes. E–H. Distance-based similarity scores based on gene expression associated with xenobiotic metabolism (E), amino acid biosynthesis (F), bile acid biosynthesis (G), and the urea cycle (H). I. Immunofluorescence staining for albumin, HNF4α, CYP2E1, and ASGR1. J. Cholyl-lysyl-fluorescein (CLF) staining.

    Article Snippet: Hierarchical clustering and gene expression heatmap analysis of 264 liver-enriched genes from Human Protein Atlas (gene list in Supplementary Table S3) also showed that D30 cHep clustered closely with 3D PHH, although expression of some genes remained lower than in uncultured PHH and liver samples ( ).

    Techniques: Generated, Expressing, Gene Expression, Immunofluorescence, Staining

    Gene expression analysis of HLC. Distance-based similarity score and gene expression heatmap with KEGG gene sets: Fatty acid metabolism (A, D), Retinol metabolism (B, E) and Complement coagulation cascade (C, F).

    Journal: bioRxiv

    Article Title: Precursor of chemically expanded hepatocytes (pre-cHep) with 1-million-fold expansion potential and liver repopulation capacity

    doi: 10.64898/2026.05.15.725446

    Figure Lengend Snippet: Gene expression analysis of HLC. Distance-based similarity score and gene expression heatmap with KEGG gene sets: Fatty acid metabolism (A, D), Retinol metabolism (B, E) and Complement coagulation cascade (C, F).

    Article Snippet: Hierarchical clustering and gene expression heatmap analysis of 264 liver-enriched genes from Human Protein Atlas (gene list in Supplementary Table S3) also showed that D30 cHep clustered closely with 3D PHH, although expression of some genes remained lower than in uncultured PHH and liver samples ( ).

    Techniques: Gene Expression, Coagulation